Wall clock time and date at job start Tue Mar 31 2020 19:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47460 * 2 1 4 4 C 1.46492 * 120.00392 * 276.15544 * 3 2 1 5 5 C 1.50701 * 109.46857 * 269.99773 * 4 3 2 6 6 H 1.08003 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00261 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00114 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99387 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47323 * 90.00417 * 9 7 5 11 11 H 1.48510 * 109.46927 * 209.99759 * 9 7 5 12 12 H 1.48499 * 109.47388 * 329.99579 * 9 7 5 13 13 C 1.34776 * 119.99633 * 96.14829 * 3 2 1 14 14 O 1.21279 * 120.00199 * 185.58571 * 13 3 2 15 15 C 1.50704 * 120.00242 * 5.58525 * 13 3 2 16 16 C 1.50697 * 112.90488 * 302.31773 * 15 13 3 17 17 O 1.21283 * 120.00246 * 112.13784 * 16 15 13 18 18 N 1.34777 * 120.00438 * 292.13161 * 16 15 13 19 19 C 1.46510 * 119.99602 * 5.03233 * 18 16 15 20 20 C 1.52995 * 109.47102 * 96.36721 * 19 18 16 21 21 C 1.46494 * 120.00717 * 185.02998 * 18 16 15 22 22 C 1.53000 * 109.47234 * 94.67852 * 21 18 16 23 23 C 1.47197 * 109.47300 * 184.95651 * 22 21 18 24 24 N 7.65024 * 48.68253 * 96.15144 * 2 1 3 25 25 C 1.53778 * 113.61403 * 171.06448 * 15 13 3 26 26 C 1.53779 * 87.08161 * 270.88471 * 25 15 13 27 27 C 1.53776 * 87.08265 * 334.56880 * 26 25 15 28 28 H 1.09001 * 109.47500 * 306.48507 * 1 2 3 29 29 H 1.09001 * 109.47409 * 66.48847 * 1 2 3 30 30 H 1.09004 * 109.47396 * 186.48870 * 1 2 3 31 31 H 1.09000 * 109.47289 * 239.99960 * 2 1 3 32 32 H 1.09003 * 109.47128 * 120.00481 * 2 1 3 33 33 H 1.09003 * 109.47206 * 29.99105 * 4 3 2 34 34 H 1.08997 * 109.47477 * 149.99982 * 4 3 2 35 35 H 0.97002 * 119.99593 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47047 * 216.36958 * 19 18 16 37 37 H 1.09000 * 109.46777 * 336.36440 * 19 18 16 38 38 H 1.08999 * 109.47300 * 66.43193 * 20 19 18 39 39 H 1.08997 * 109.47027 * 186.43156 * 20 19 18 40 40 H 1.08998 * 109.47389 * 306.42831 * 20 19 18 41 41 H 1.08998 * 109.47596 * 214.68195 * 21 18 16 42 42 H 1.09001 * 109.46926 * 334.68292 * 21 18 16 43 43 H 1.09002 * 109.47162 * 304.96146 * 22 21 18 44 44 H 1.09004 * 109.46839 * 64.95540 * 22 21 18 45 45 H 1.08996 * 113.61549 * 25.43296 * 25 15 13 46 46 H 1.09007 * 113.61409 * 156.33704 * 25 15 13 47 47 H 1.08993 * 113.61275 * 89.12100 * 26 25 15 48 48 H 1.09000 * 113.61260 * 220.02064 * 26 25 15 49 49 H 1.09001 * 113.61673 * 270.88587 * 27 26 25 50 50 H 1.08997 * 113.61661 * 139.98139 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1343 2.1172 -1.2613 5 6 3.5059 1.8986 -1.8461 6 1 4.2200 1.2742 -1.3296 7 6 3.8494 2.4957 -3.0405 8 7 5.0465 2.3053 -3.5506 9 14 2.6145 3.5761 -3.9335 10 1 2.7627 4.9807 -3.4745 11 1 2.8611 3.5048 -5.3962 12 1 1.2383 3.1019 -3.6398 13 6 2.3608 1.9748 1.1605 14 8 2.6682 3.1479 1.1741 15 6 2.3619 1.1808 2.4415 16 6 1.0233 0.5604 2.7481 17 8 0.8898 -0.6444 2.7081 18 7 -0.0257 1.3442 3.0669 19 6 0.1050 2.8023 3.0083 20 6 -0.4298 3.3088 1.6673 21 6 -1.2965 0.7385 3.4721 22 6 -1.3563 0.6513 4.9984 23 6 -2.5781 -0.0639 5.4016 24 7 -3.5210 -0.6157 5.7127 25 6 2.9795 1.9331 3.6320 26 6 4.3327 1.3424 3.2022 27 6 3.5378 0.1962 2.5549 28 1 -0.3634 0.6111 0.8262 29 1 -0.3634 0.4100 -0.9423 30 1 -0.3634 -1.0211 0.1161 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3796 1.7592 -1.9616 34 1 1.9834 3.1807 -1.0766 35 1 5.2879 2.7251 -4.3911 36 1 -0.4668 3.2513 3.8205 37 1 1.1550 3.0772 3.1081 38 1 -1.5047 3.1355 1.6160 39 1 -0.2291 4.3762 1.5759 40 1 0.0635 2.7755 0.8547 41 1 -2.1226 1.3508 3.1105 42 1 -1.3734 -0.2626 3.0477 43 1 -0.4824 0.1136 5.3662 44 1 -1.3681 1.6567 5.4195 45 1 2.9269 3.0177 3.5379 46 1 2.6346 1.5742 4.6018 47 1 4.8707 1.9609 2.4839 48 1 4.9554 1.0241 4.0383 49 1 3.3455 -0.6376 3.2300 50 1 3.9359 -0.1214 1.5912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269646453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:25 Heat of formation + Delta-G solvation = -8.405489 kcal Electronic energy + Delta-G solvation = -31963.572192 eV Core-core repulsion = 27992.587064 eV Total energy + Delta-G solvation = -3970.985129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.60545 -38.95648 -37.43101 -36.99341 -36.27580 -35.26020 -32.75882 -32.60115 -30.30450 -30.04980 -28.57520 -26.96777 -25.76862 -24.43063 -23.58888 -22.89179 -22.63820 -20.22961 -19.79436 -18.16347 -17.96772 -17.48483 -16.98805 -16.52612 -16.13636 -15.69443 -15.34803 -15.05705 -14.88186 -14.56581 -14.37985 -14.02752 -13.78518 -13.51627 -13.22240 -13.02855 -12.94034 -12.83647 -12.63381 -12.54239 -12.41484 -12.23458 -12.17059 -12.02509 -11.93065 -11.70001 -11.43513 -11.28428 -11.26806 -11.09409 -10.95015 -10.77406 -10.68557 -10.51108 -10.30417 -10.19214 -9.68349 -9.58198 -9.11588 -8.95028 -8.63038 -7.79507 -6.12829 -4.11928 2.27277 2.43216 2.46645 2.74721 3.09269 3.25361 3.31337 3.32741 3.63038 3.74587 4.31532 4.35367 4.47679 4.54547 4.59869 4.66779 4.77260 4.83985 4.87440 4.97433 5.18152 5.20168 5.28639 5.38097 5.42713 5.46032 5.53393 5.61228 5.64259 5.71790 5.77930 5.80596 5.88827 5.98665 6.07671 6.09192 6.17985 6.21638 6.27139 6.31882 6.44206 6.50954 6.67693 6.87519 7.09910 7.22370 7.26287 7.55835 7.96851 8.15212 8.41248 8.77980 8.91214 9.47192 11.00401 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.003989 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.346827 B = 7018.310224 C = 7602.123474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.581 5.581 4 C 0.217 3.783 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.542 3.458 14 O -0.530 6.530 15 C -0.135 4.135 16 C 0.545 3.455 17 O -0.524 6.524 18 N -0.609 5.609 19 C 0.090 3.910 20 C -0.175 4.175 21 C 0.117 3.883 22 C -0.043 4.043 23 C 0.212 3.788 24 N -0.435 5.435 25 C -0.113 4.113 26 C -0.138 4.138 27 C -0.108 4.108 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.096 0.904 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 -0.732 16.382 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.036 4.036 3 N -0.311 5.311 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.327 3.673 14 O -0.407 6.407 15 C -0.141 4.141 16 C 0.333 3.667 17 O -0.400 6.400 18 N -0.342 5.342 19 C -0.032 4.032 20 C -0.233 4.233 21 C -0.008 4.008 22 C -0.084 4.084 23 C -0.107 4.107 24 N -0.112 5.112 25 C -0.151 4.151 26 C -0.175 4.175 27 C -0.146 4.146 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.115 0.885 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.843 -1.531 16.622 19.905 hybrid contribution -0.244 0.777 -0.880 1.199 sum -11.087 -0.754 15.742 19.269 Atomic orbital electron populations 1.22261 0.96695 1.01810 1.01826 1.21820 0.93859 0.83527 1.04428 1.47887 1.62257 1.13721 1.07257 1.19674 0.97867 0.92651 0.80179 1.21305 0.97677 1.31399 1.06420 0.90674 1.24839 0.95139 0.95930 0.96952 1.69891 1.19350 1.44208 1.19956 0.86884 0.82094 0.81748 0.79171 1.19871 1.21067 1.19097 1.19067 0.77920 0.86864 0.83432 1.90667 1.48732 1.15563 1.85745 1.22418 0.93524 1.00485 0.97722 1.20104 0.84740 0.86718 0.75127 1.90686 1.83739 1.14111 1.51457 1.47932 1.11246 1.07335 1.67674 1.21960 1.04461 0.78363 0.98416 1.22253 1.00788 1.02417 0.97872 1.21292 0.86368 1.01594 0.91531 1.19690 0.90033 1.00485 0.98191 1.28946 0.94422 0.93669 0.93649 1.81253 1.11717 1.09673 1.08535 1.22899 0.95979 1.01334 0.94881 1.22841 0.96091 0.97601 1.00995 1.22868 0.92508 0.96327 1.02851 0.92546 0.92810 0.91949 0.90140 0.89026 0.95269 0.94437 0.92528 0.90378 0.88022 0.92891 0.91068 0.91178 0.89529 0.88422 0.86984 0.87097 0.88915 0.89468 0.88950 0.90790 0.88533 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.13 37.15 0.34 -2.09 16 2 C 0.09 1.47 5.55 -4.05 -0.02 1.45 16 3 N -0.58 -11.27 2.05 -175.07 -0.36 -11.63 16 4 C 0.22 5.03 4.29 -5.20 -0.02 5.01 16 5 C -0.53 -14.62 9.94 -34.44 -0.34 -14.96 16 6 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 9 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.54 9.75 3.59 -10.98 -0.04 9.71 16 14 O -0.53 -10.96 14.53 5.56 0.08 -10.88 16 15 C -0.13 -1.86 0.06 -156.00 -0.01 -1.87 16 16 C 0.54 6.73 3.71 -10.99 -0.04 6.69 16 17 O -0.52 -7.34 13.24 5.55 0.07 -7.26 16 18 N -0.61 -5.83 1.68 -173.69 -0.29 -6.12 16 19 C 0.09 0.83 5.56 -4.04 -0.02 0.81 16 20 C -0.18 -1.98 9.48 37.15 0.35 -1.62 16 21 C 0.12 0.87 5.27 -4.04 -0.02 0.85 16 22 C -0.04 -0.23 6.03 -29.52 -0.18 -0.41 16 23 C 0.21 1.80 15.43 -20.76 -0.32 1.48 16 24 N -0.43 -5.12 18.54 42.15 0.78 -4.34 16 25 C -0.11 -1.28 5.64 -25.92 -0.15 -1.42 16 26 C -0.14 -1.70 7.80 -25.92 -0.20 -1.90 16 27 C -0.11 -1.44 5.85 -25.92 -0.15 -1.59 16 28 H 0.06 0.77 4.64 -51.93 -0.24 0.53 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 32 H 0.09 1.48 3.53 -51.93 -0.18 1.30 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.04 0.92 6.78 -51.93 -0.35 0.56 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.10 1.10 3.43 -51.93 -0.18 0.92 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.03 5.41 -51.93 -0.28 0.75 16 41 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 42 H 0.10 0.89 7.23 -51.93 -0.38 0.51 16 43 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 1.10 6.30 -51.93 -0.33 0.78 16 46 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.15 7.76 -51.93 -0.40 0.75 16 50 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -33.51 388.98 -6.45 -39.95 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.77 Total: 2.18 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.92 Total: 2.12 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.90 Total: -48.28 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.15 Total: -18.14 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.51 -6.45 -39.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269646453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.547 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds