Wall clock time and date at job start Tue Mar 31 2020 19:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47460 * 2 1 4 4 C 1.46492 * 120.00392 * 276.15544 * 3 2 1 5 5 C 1.50701 * 109.46857 * 269.99773 * 4 3 2 6 6 H 1.08003 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00261 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00114 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99387 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47323 * 90.00417 * 9 7 5 11 11 H 1.48510 * 109.46927 * 209.99759 * 9 7 5 12 12 H 1.48499 * 109.47388 * 329.99579 * 9 7 5 13 13 C 1.34776 * 119.99633 * 96.14829 * 3 2 1 14 14 O 1.21279 * 120.00199 * 185.58571 * 13 3 2 15 15 C 1.50704 * 120.00242 * 5.58525 * 13 3 2 16 16 C 1.50697 * 112.90488 * 302.31773 * 15 13 3 17 17 O 1.21283 * 120.00246 * 112.13784 * 16 15 13 18 18 N 1.34777 * 120.00438 * 292.13161 * 16 15 13 19 19 C 1.46510 * 119.99602 * 5.03233 * 18 16 15 20 20 C 1.52995 * 109.47102 * 96.36721 * 19 18 16 21 21 C 1.46494 * 120.00717 * 185.02998 * 18 16 15 22 22 C 1.53000 * 109.47234 * 94.67852 * 21 18 16 23 23 C 1.47197 * 109.47300 * 184.95651 * 22 21 18 24 24 N 7.65024 * 48.68253 * 96.15144 * 2 1 3 25 25 C 1.53778 * 113.61403 * 171.06448 * 15 13 3 26 26 C 1.53779 * 87.08161 * 270.88471 * 25 15 13 27 27 C 1.53776 * 87.08265 * 334.56880 * 26 25 15 28 28 H 1.09001 * 109.47500 * 306.48507 * 1 2 3 29 29 H 1.09001 * 109.47409 * 66.48847 * 1 2 3 30 30 H 1.09004 * 109.47396 * 186.48870 * 1 2 3 31 31 H 1.09000 * 109.47289 * 239.99960 * 2 1 3 32 32 H 1.09003 * 109.47128 * 120.00481 * 2 1 3 33 33 H 1.09003 * 109.47206 * 29.99105 * 4 3 2 34 34 H 1.08997 * 109.47477 * 149.99982 * 4 3 2 35 35 H 0.97002 * 119.99593 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47047 * 216.36958 * 19 18 16 37 37 H 1.09000 * 109.46777 * 336.36440 * 19 18 16 38 38 H 1.08999 * 109.47300 * 66.43193 * 20 19 18 39 39 H 1.08997 * 109.47027 * 186.43156 * 20 19 18 40 40 H 1.08998 * 109.47389 * 306.42831 * 20 19 18 41 41 H 1.08998 * 109.47596 * 214.68195 * 21 18 16 42 42 H 1.09001 * 109.46926 * 334.68292 * 21 18 16 43 43 H 1.09002 * 109.47162 * 304.96146 * 22 21 18 44 44 H 1.09004 * 109.46839 * 64.95540 * 22 21 18 45 45 H 1.08996 * 113.61549 * 25.43296 * 25 15 13 46 46 H 1.09007 * 113.61409 * 156.33704 * 25 15 13 47 47 H 1.08993 * 113.61275 * 89.12100 * 26 25 15 48 48 H 1.09000 * 113.61260 * 220.02064 * 26 25 15 49 49 H 1.09001 * 113.61673 * 270.88587 * 27 26 25 50 50 H 1.08997 * 113.61661 * 139.98139 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1343 2.1172 -1.2613 5 6 3.5059 1.8986 -1.8461 6 1 4.2200 1.2742 -1.3296 7 6 3.8494 2.4957 -3.0405 8 7 5.0465 2.3053 -3.5506 9 14 2.6145 3.5761 -3.9335 10 1 2.7627 4.9807 -3.4745 11 1 2.8611 3.5048 -5.3962 12 1 1.2383 3.1019 -3.6398 13 6 2.3608 1.9748 1.1605 14 8 2.6682 3.1479 1.1741 15 6 2.3619 1.1808 2.4415 16 6 1.0233 0.5604 2.7481 17 8 0.8898 -0.6444 2.7081 18 7 -0.0257 1.3442 3.0669 19 6 0.1050 2.8023 3.0083 20 6 -0.4298 3.3088 1.6673 21 6 -1.2965 0.7385 3.4721 22 6 -1.3563 0.6513 4.9984 23 6 -2.5781 -0.0639 5.4016 24 7 -3.5210 -0.6157 5.7127 25 6 2.9795 1.9331 3.6320 26 6 4.3327 1.3424 3.2022 27 6 3.5378 0.1962 2.5549 28 1 -0.3634 0.6111 0.8262 29 1 -0.3634 0.4100 -0.9423 30 1 -0.3634 -1.0211 0.1161 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3796 1.7592 -1.9616 34 1 1.9834 3.1807 -1.0766 35 1 5.2879 2.7251 -4.3911 36 1 -0.4668 3.2513 3.8205 37 1 1.1550 3.0772 3.1081 38 1 -1.5047 3.1355 1.6160 39 1 -0.2291 4.3762 1.5759 40 1 0.0635 2.7755 0.8547 41 1 -2.1226 1.3508 3.1105 42 1 -1.3734 -0.2626 3.0477 43 1 -0.4824 0.1136 5.3662 44 1 -1.3681 1.6567 5.4195 45 1 2.9269 3.0177 3.5379 46 1 2.6346 1.5742 4.6018 47 1 4.8707 1.9609 2.4839 48 1 4.9554 1.0241 4.0383 49 1 3.3455 -0.6376 3.2300 50 1 3.9359 -0.1214 1.5912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269646453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:24 Heat of formation + Delta-G solvation = -28.883959 kcal Electronic energy + Delta-G solvation = -31964.460206 eV Core-core repulsion = 27992.587064 eV Total energy + Delta-G solvation = -3971.873142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70659 -40.08770 -38.50113 -37.92164 -37.19991 -36.65125 -34.82003 -33.29077 -31.88748 -30.87724 -30.07709 -28.22569 -26.82606 -25.26978 -24.75744 -24.20971 -24.04597 -21.55488 -20.73106 -19.19718 -19.03020 -18.77862 -18.59451 -17.48292 -17.41200 -16.90498 -16.41413 -16.27497 -15.91745 -15.83810 -15.39291 -15.27164 -14.79190 -14.66140 -14.53086 -14.36926 -14.05905 -13.78242 -13.69446 -13.64130 -13.46044 -13.42351 -13.34847 -13.19782 -13.05739 -12.87882 -12.72401 -12.49635 -12.35985 -12.26114 -12.05283 -12.00005 -11.89981 -11.82400 -11.81329 -11.72033 -11.31366 -10.82786 -10.73538 -10.50219 -9.74594 -9.43294 -8.33771 -6.38880 1.32763 1.35521 1.39297 1.44294 1.56967 1.73659 1.85425 2.04083 2.21935 2.30545 3.00456 3.17304 3.40096 3.44002 3.49962 3.54829 3.82458 4.05289 4.08881 4.11835 4.22197 4.34106 4.37063 4.43075 4.55732 4.56808 4.64418 4.72170 4.75694 4.78399 4.82614 4.88645 4.90771 4.91657 4.96834 4.97644 5.01668 5.05372 5.08852 5.15241 5.26165 5.40252 5.42613 5.47401 5.57868 5.61244 6.22365 6.25459 6.62349 6.62653 6.65477 7.06743 7.19748 7.35235 8.83128 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.003989 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.346827 B = 7018.310224 C = 7602.123474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.087 3.913 3 N -0.590 5.590 4 C 0.230 3.770 5 C -0.535 4.535 6 H 0.028 0.972 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.242 1.242 13 C 0.542 3.458 14 O -0.562 6.562 15 C -0.138 4.138 16 C 0.548 3.452 17 O -0.541 6.541 18 N -0.597 5.597 19 C 0.089 3.911 20 C -0.176 4.176 21 C 0.114 3.886 22 C -0.032 4.032 23 C 0.241 3.759 24 N -0.499 5.499 25 C -0.096 4.096 26 C -0.139 4.139 27 C -0.109 4.109 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.149 0.851 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.054 0.946 48 H 0.104 0.896 49 H 0.119 0.881 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 0.078 18.641 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.036 4.036 3 N -0.320 5.320 4 C 0.108 3.892 5 C -0.574 4.574 6 H 0.047 0.953 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.165 1.165 13 C 0.329 3.671 14 O -0.441 6.441 15 C -0.144 4.144 16 C 0.336 3.664 17 O -0.419 6.419 18 N -0.328 5.328 19 C -0.032 4.032 20 C -0.234 4.234 21 C -0.010 4.010 22 C -0.073 4.073 23 C -0.076 4.076 24 N -0.177 5.177 25 C -0.133 4.133 26 C -0.177 4.177 27 C -0.147 4.147 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.167 0.833 45 H 0.106 0.894 46 H 0.146 0.854 47 H 0.073 0.927 48 H 0.123 0.877 49 H 0.137 0.863 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.413 -0.735 18.915 23.199 hybrid contribution 0.668 0.502 -1.579 1.787 sum -12.745 -0.233 17.335 21.517 Atomic orbital electron populations 1.22167 0.94376 1.02936 1.02019 1.21923 0.95689 0.82078 1.03899 1.47890 1.63045 1.14479 1.06633 1.19263 0.95200 0.92661 0.82073 1.21539 0.99019 1.30409 1.06437 0.95341 1.25807 0.97242 0.97470 0.97911 1.70048 1.21762 1.45844 1.20760 0.85764 0.80396 0.79379 0.77756 1.19504 1.20312 1.16486 1.19713 0.76292 0.86760 0.84322 1.90634 1.49754 1.17235 1.86504 1.22346 0.95230 1.00577 0.96282 1.19761 0.84699 0.86504 0.75462 1.90687 1.83884 1.14751 1.52563 1.47864 1.11134 1.07371 1.66464 1.22069 1.04351 0.77955 0.98868 1.22246 1.01786 1.01651 0.97739 1.21433 0.85559 1.01026 0.92964 1.19809 0.88669 1.02256 0.96574 1.29414 0.94029 0.92220 0.91950 1.81294 1.13880 1.11864 1.10628 1.22956 0.94138 1.00839 0.95383 1.22793 0.97108 0.96710 1.01065 1.22908 0.92709 0.97267 1.01811 0.91528 0.93227 0.90430 0.92044 0.88235 0.94297 0.95378 0.92287 0.85616 0.89583 0.90820 0.91617 0.94965 0.87511 0.90073 0.86044 0.83335 0.89450 0.85398 0.92724 0.87718 0.86263 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 9.13 71.98 0.66 -3.71 16 2 C 0.09 2.97 5.55 86.38 0.48 3.45 16 3 N -0.59 -23.54 2.05 -826.18 -1.70 -25.23 16 4 C 0.23 10.95 4.29 85.64 0.37 11.32 16 5 C -0.54 -31.06 9.94 25.60 0.25 -30.81 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.81 5.47 84.66 0.46 1.27 16 8 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 9 Si 0.94 43.71 27.47 68.60 1.88 45.59 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 13 C 0.54 19.81 3.59 87.66 0.31 20.12 16 14 O -0.56 -23.87 14.53 -3.03 -0.04 -23.91 16 15 C -0.14 -3.65 0.06 -53.15 0.00 -3.66 16 16 C 0.55 12.18 3.71 87.66 0.32 12.51 16 17 O -0.54 -13.88 13.24 -3.04 -0.04 -13.92 16 18 N -0.60 -9.19 1.68 -821.81 -1.38 -10.57 16 19 C 0.09 1.31 5.56 86.38 0.48 1.79 16 20 C -0.18 -3.53 9.48 71.98 0.68 -2.85 16 21 C 0.11 1.21 5.27 86.38 0.46 1.66 16 22 C -0.03 -0.19 6.03 28.79 0.17 -0.02 16 23 C 0.24 3.34 15.43 89.44 1.38 4.72 16 24 N -0.50 -10.90 18.54 20.00 0.37 -10.53 16 25 C -0.10 -1.93 5.64 31.12 0.18 -1.76 16 26 C -0.14 -3.36 7.80 31.12 0.24 -3.12 16 27 C -0.11 -2.89 5.85 31.12 0.18 -2.71 16 28 H 0.07 1.70 4.64 -2.39 -0.01 1.69 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 32 H 0.10 3.25 3.53 -2.39 -0.01 3.24 16 33 H 0.04 1.77 7.13 -2.39 -0.02 1.75 16 34 H 0.03 1.40 6.78 -2.39 -0.02 1.38 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.13 0.71 8.12 -2.39 -0.02 0.69 16 37 H 0.09 1.61 3.43 -2.39 -0.01 1.60 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.03 0.90 5.41 -2.39 -0.01 0.88 16 41 H 0.11 0.77 8.11 -2.39 -0.02 0.75 16 42 H 0.08 1.21 7.23 -2.39 -0.02 1.19 16 43 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.15 -0.11 8.14 -2.38 -0.02 -0.13 16 45 H 0.09 1.92 6.30 -2.39 -0.02 1.91 16 46 H 0.13 1.58 8.09 -2.38 -0.02 1.56 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 48 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.12 2.63 7.76 -2.39 -0.02 2.61 16 50 H 0.05 1.63 7.83 -2.39 -0.02 1.61 16 Total: -1.00 -79.33 388.98 6.92 -72.41 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.89 Total: 16.81 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.63 Total: 8.22 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -2.41 Total: -105.19 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.08 Total: -37.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -79.33 6.92 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269646453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.522 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds