Wall clock time and date at job start Tue Mar 31 2020 19:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46963 * 2 1 4 4 C 1.50698 * 109.47498 * 120.00518 * 2 1 3 5 5 O 1.21273 * 120.00313 * 91.90864 * 4 2 1 6 6 N 1.34779 * 119.99773 * 271.64365 * 4 2 1 7 7 C 1.46506 * 119.99978 * 355.29489 * 6 4 2 8 8 C 1.50693 * 109.47099 * 90.00493 * 7 6 4 9 9 H 1.08007 * 120.00002 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00178 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00081 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47374 * 59.99726 * 12 10 8 14 14 H 1.48501 * 109.46935 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47200 * 299.99465 * 12 10 8 16 16 C 1.46498 * 120.00204 * 175.30199 * 6 4 2 17 17 C 1.50703 * 109.47265 * 94.73676 * 16 6 4 18 18 C 1.34508 * 125.78931 * 85.12817 * 17 16 6 19 19 C 1.41384 * 106.84102 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.83872 * 359.97438 * 19 18 17 21 21 O 1.34301 * 108.42100 * 359.73842 * 20 19 18 22 22 N 1.46904 * 109.46570 * 240.00379 * 2 1 3 23 23 C 1.46959 * 110.99700 * 179.45539 * 22 2 1 24 24 C 1.53048 * 109.36762 * 176.80984 * 23 22 2 25 25 N 1.46962 * 109.36295 * 58.39828 * 24 23 22 26 26 C 1.46897 * 111.00077 * 176.81144 * 25 24 23 27 27 C 1.46959 * 110.88196 * 300.68333 * 25 24 23 28 28 C 1.46955 * 111.00150 * 55.65842 * 22 2 1 29 29 H 1.08998 * 109.46852 * 305.32736 * 1 2 3 30 30 H 1.08994 * 109.47663 * 65.32435 * 1 2 3 31 31 H 1.09002 * 109.47062 * 185.32823 * 1 2 3 32 32 H 1.08998 * 109.46693 * 210.00528 * 7 6 4 33 33 H 1.08999 * 109.46783 * 330.00414 * 7 6 4 34 34 H 0.96999 * 119.99785 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.47186 * 214.73600 * 16 6 4 36 36 H 1.09001 * 109.47006 * 334.73655 * 16 6 4 37 37 H 1.08000 * 126.58074 * 359.95875 * 18 17 16 38 38 H 1.07997 * 126.57907 * 179.97438 * 19 18 17 39 39 H 1.08004 * 125.78659 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.48914 * 296.78016 * 23 22 2 41 41 H 1.09004 * 109.48829 * 56.83798 * 23 22 2 42 42 H 1.08994 * 109.49002 * 298.43597 * 24 23 22 43 43 H 1.08995 * 109.50899 * 178.37492 * 24 23 22 44 44 H 1.09002 * 109.47051 * 183.80407 * 26 25 24 45 45 H 1.09001 * 109.47040 * 303.80059 * 26 25 24 46 46 H 1.09001 * 109.46930 * 63.80474 * 26 25 24 47 47 H 1.08997 * 109.48557 * 299.35405 * 27 25 24 48 48 H 1.08994 * 109.50352 * 179.29538 * 27 25 24 49 49 H 1.08997 * 109.48352 * 303.14795 * 28 22 2 50 50 H 1.08994 * 109.48971 * 63.21678 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.2676 -1.8995 1.1905 6 7 2.2255 -0.0234 2.3736 7 6 2.0464 1.4305 2.3937 8 6 0.6153 1.7556 2.7362 9 1 -0.0901 0.9589 2.9209 10 6 0.2065 3.0701 2.8137 11 7 1.0656 4.0402 2.5892 12 14 -1.5672 3.4730 3.2390 13 1 -1.8945 2.9161 4.5761 14 1 -1.7489 4.9468 3.2591 15 1 -2.4683 2.8767 2.2202 16 6 2.6147 -0.7303 3.5963 17 6 4.1146 -0.6980 3.7395 18 6 4.8305 0.2957 4.2957 19 6 6.1896 -0.0864 4.2196 20 6 6.2228 -1.2910 3.6220 21 8 4.9627 -1.6592 3.3389 22 7 2.0196 -0.6925 -1.1995 23 6 3.4886 -0.7008 -1.2401 24 6 3.9582 -1.4979 -2.4593 25 7 3.4039 -0.8941 -3.6792 26 6 3.8935 -1.5865 -4.8786 27 6 1.9349 -0.8857 -3.6386 28 6 1.4654 -0.0886 -2.4193 29 1 -0.3633 0.5942 0.8384 30 1 -0.3634 0.4290 -0.9337 31 1 -0.3633 -1.0232 0.0954 32 1 2.7074 1.8678 3.1419 33 1 2.2871 1.8398 1.4125 34 1 0.7781 4.9650 2.6441 35 1 2.1570 -0.2447 4.4581 36 1 2.2773 -1.7653 3.5407 37 1 4.4418 1.2105 4.7182 38 1 7.0382 0.4802 4.5734 39 1 7.1119 -1.8663 3.4096 40 1 3.8563 0.3229 -1.3112 41 1 3.8748 -1.1639 -0.3320 42 1 3.6135 -2.5284 -2.3748 43 1 5.0469 -1.4813 -2.5078 44 1 3.5222 -1.0782 -5.7686 45 1 4.9835 -1.5780 -4.8836 46 1 3.5381 -2.6169 -4.8738 47 1 1.5673 -1.9094 -3.5674 48 1 1.5484 -0.4228 -4.5465 49 1 0.3766 -0.1056 -2.3710 50 1 1.8100 0.9420 -2.5038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273344034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:00 Heat of formation + Delta-G solvation = 7.689675 kcal Electronic energy + Delta-G solvation = -30932.225348 eV Core-core repulsion = 26961.938158 eV Total energy + Delta-G solvation = -3970.287190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16855 -39.85580 -38.44854 -35.55340 -35.06098 -32.85776 -32.49731 -31.37347 -30.81593 -29.88967 -27.41973 -27.21853 -25.86353 -24.13366 -23.35539 -22.97557 -21.91994 -21.33190 -20.20497 -19.60390 -18.28608 -17.16679 -16.65317 -16.37827 -16.23297 -15.77147 -15.16030 -14.98146 -14.82600 -14.67321 -14.58005 -14.41192 -13.90666 -13.76162 -13.39527 -13.08661 -12.56204 -12.47992 -12.45309 -12.41655 -12.20246 -12.12421 -11.88038 -11.70365 -11.53481 -11.31870 -11.24298 -11.08959 -11.01587 -10.94564 -10.79317 -10.51254 -10.41149 -10.18641 -9.83526 -9.56381 -9.00358 -8.62195 -8.36222 -8.16936 -7.87854 -7.85944 -6.23665 -4.31085 2.03659 2.91878 3.20253 3.22214 3.26503 3.28563 3.51413 3.79028 3.95719 4.26222 4.36969 4.98764 5.04247 5.07569 5.09353 5.16283 5.29914 5.35992 5.36686 5.40977 5.52457 5.56825 5.58554 5.65739 5.72150 5.75440 5.78274 5.86578 5.90639 6.04570 6.05786 6.13113 6.16231 6.20256 6.27474 6.31968 6.43390 6.44327 6.65737 6.85214 6.85713 6.98930 7.01817 7.14035 7.29825 7.38463 7.47845 7.53161 7.70039 7.98548 8.24850 8.73404 8.98979 9.36172 10.83011 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.005191 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.456145 B = 5392.311645 C = 8143.377522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.073 0.927 4 C 0.525 3.475 5 O -0.548 6.548 6 N -0.594 5.594 7 C 0.237 3.763 8 C -0.538 4.538 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.894 3.106 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.196 3.804 17 C -0.015 4.015 18 C -0.201 4.201 19 C -0.216 4.216 20 C -0.054 4.054 21 O -0.169 6.169 22 N -0.520 5.520 23 C 0.057 3.943 24 C 0.063 3.937 25 N -0.547 5.547 26 C 0.027 3.973 27 C 0.060 3.940 28 C 0.053 3.947 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.196 0.804 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.024 0.976 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -7.375 -6.401 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 H 0.090 0.910 4 C 0.313 3.687 5 O -0.426 6.426 6 N -0.325 5.325 7 C 0.118 3.882 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.721 3.279 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.072 3.928 17 C -0.066 4.066 18 C -0.221 4.221 19 C -0.235 4.235 20 C -0.122 4.122 21 O -0.064 6.064 22 N -0.246 5.246 23 C -0.072 4.072 24 C -0.065 4.065 25 N -0.272 5.272 26 C -0.122 4.122 27 C -0.068 4.068 28 C -0.075 4.075 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.212 0.788 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.774 -8.045 -6.566 11.882 hybrid contribution -0.599 0.776 0.373 1.048 sum 5.175 -7.270 -6.193 10.862 Atomic orbital electron populations 1.21914 0.91785 1.02670 1.03795 1.21544 0.97687 0.96393 0.88008 0.90979 1.20311 0.76886 0.87006 0.84494 1.90610 1.51878 1.15551 1.84532 1.48305 1.65873 1.10637 1.07705 1.19500 0.97277 0.72820 0.98615 1.21414 0.95030 0.92151 1.49089 0.91766 1.24922 0.97730 0.96109 0.94793 1.69911 1.34595 0.99872 1.48229 0.86620 0.84667 0.77334 0.79271 1.20078 1.21191 1.19939 1.19663 0.83784 0.99674 0.89662 1.23233 0.93809 0.88675 1.00914 1.21684 0.92925 1.01002 1.06523 1.21791 0.97716 0.97641 1.06338 1.23935 0.85912 0.98074 1.04294 1.84092 1.15837 1.42323 1.64144 1.61918 1.07495 1.54175 1.01038 1.22157 0.87864 0.98957 0.98188 1.22111 0.98903 0.96706 0.88804 1.62177 1.08284 1.54199 1.02523 1.22321 1.00651 0.96291 0.92911 1.22156 0.87221 0.99510 0.97941 1.22240 1.00130 0.96425 0.88695 0.88628 0.92273 0.92517 0.94417 0.94475 0.92398 0.87206 0.89185 0.83325 0.83925 0.78769 0.94450 0.89766 0.93882 0.90705 0.91548 0.91575 0.95764 0.94024 0.90539 0.89558 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.98 37.16 0.33 -2.25 16 2 C 0.07 1.42 1.92 -68.86 -0.13 1.28 16 3 H 0.07 1.49 5.87 -51.93 -0.30 1.19 16 4 C 0.53 10.98 5.78 -10.99 -0.06 10.91 16 5 O -0.55 -12.48 15.20 5.56 0.08 -12.39 16 6 N -0.59 -12.22 2.44 -176.44 -0.43 -12.65 16 7 C 0.24 5.39 4.95 -5.19 -0.03 5.36 16 8 C -0.54 -12.96 7.63 -34.44 -0.26 -13.22 16 9 H 0.06 1.55 7.40 -52.48 -0.39 1.16 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 12 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 C 0.20 3.63 5.95 -5.19 -0.03 3.60 16 17 C -0.01 -0.26 6.90 -35.63 -0.25 -0.51 16 18 C -0.20 -3.41 10.73 -39.70 -0.43 -3.84 16 19 C -0.22 -3.17 10.91 -39.70 -0.43 -3.61 16 20 C -0.05 -0.77 12.09 29.42 0.36 -0.42 16 21 O -0.17 -3.02 10.65 5.72 0.06 -2.96 16 22 N -0.52 -9.04 4.29 -227.87 -0.98 -10.02 16 23 C 0.06 0.96 5.29 -3.77 -0.02 0.94 16 24 C 0.06 0.90 5.62 -3.77 -0.02 0.88 16 25 N -0.55 -7.25 4.97 -242.76 -1.21 -8.46 16 26 C 0.03 0.27 9.60 60.06 0.58 0.85 16 27 C 0.06 0.77 5.62 -3.76 -0.02 0.75 16 28 C 0.05 0.78 5.23 -3.77 -0.02 0.76 16 29 H 0.10 1.90 5.76 -51.93 -0.30 1.60 16 30 H 0.06 0.93 5.97 -51.93 -0.31 0.62 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 33 H 0.04 0.90 5.89 -51.93 -0.31 0.60 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.11 1.89 8.11 -51.93 -0.42 1.47 16 36 H 0.09 1.67 7.35 -51.93 -0.38 1.28 16 37 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 38 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.61 6.37 -51.93 -0.33 1.28 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 46 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.09 1.18 5.94 -51.93 -0.31 0.87 16 50 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -28.81 394.88 -9.43 -38.24 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.10 Total: 7.39 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.53 Total: 3.10 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -1.88 Total: -53.85 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.15 Total: -15.36 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.81 -9.43 -38.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273344034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.934 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds