Wall clock time and date at job start Tue Mar 31 2020 19:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46963 * 2 1 4 4 C 1.50698 * 109.47498 * 120.00518 * 2 1 3 5 5 O 1.21273 * 120.00313 * 91.90864 * 4 2 1 6 6 N 1.34779 * 119.99773 * 271.64365 * 4 2 1 7 7 C 1.46506 * 119.99978 * 355.29489 * 6 4 2 8 8 C 1.50693 * 109.47099 * 90.00493 * 7 6 4 9 9 H 1.08007 * 120.00002 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00178 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00081 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47374 * 59.99726 * 12 10 8 14 14 H 1.48501 * 109.46935 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47200 * 299.99465 * 12 10 8 16 16 C 1.46498 * 120.00204 * 175.30199 * 6 4 2 17 17 C 1.50703 * 109.47265 * 94.73676 * 16 6 4 18 18 C 1.34508 * 125.78931 * 85.12817 * 17 16 6 19 19 C 1.41384 * 106.84102 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.83872 * 359.97438 * 19 18 17 21 21 O 1.34301 * 108.42100 * 359.73842 * 20 19 18 22 22 N 1.46904 * 109.46570 * 240.00379 * 2 1 3 23 23 C 1.46959 * 110.99700 * 179.45539 * 22 2 1 24 24 C 1.53048 * 109.36762 * 176.80984 * 23 22 2 25 25 N 1.46962 * 109.36295 * 58.39828 * 24 23 22 26 26 C 1.46897 * 111.00077 * 176.81144 * 25 24 23 27 27 C 1.46959 * 110.88196 * 300.68333 * 25 24 23 28 28 C 1.46955 * 111.00150 * 55.65842 * 22 2 1 29 29 H 1.08998 * 109.46852 * 305.32736 * 1 2 3 30 30 H 1.08994 * 109.47663 * 65.32435 * 1 2 3 31 31 H 1.09002 * 109.47062 * 185.32823 * 1 2 3 32 32 H 1.08998 * 109.46693 * 210.00528 * 7 6 4 33 33 H 1.08999 * 109.46783 * 330.00414 * 7 6 4 34 34 H 0.96999 * 119.99785 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.47186 * 214.73600 * 16 6 4 36 36 H 1.09001 * 109.47006 * 334.73655 * 16 6 4 37 37 H 1.08000 * 126.58074 * 359.95875 * 18 17 16 38 38 H 1.07997 * 126.57907 * 179.97438 * 19 18 17 39 39 H 1.08004 * 125.78659 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.48914 * 296.78016 * 23 22 2 41 41 H 1.09004 * 109.48829 * 56.83798 * 23 22 2 42 42 H 1.08994 * 109.49002 * 298.43597 * 24 23 22 43 43 H 1.08995 * 109.50899 * 178.37492 * 24 23 22 44 44 H 1.09002 * 109.47051 * 183.80407 * 26 25 24 45 45 H 1.09001 * 109.47040 * 303.80059 * 26 25 24 46 46 H 1.09001 * 109.46930 * 63.80474 * 26 25 24 47 47 H 1.08997 * 109.48557 * 299.35405 * 27 25 24 48 48 H 1.08994 * 109.50352 * 179.29538 * 27 25 24 49 49 H 1.08997 * 109.48352 * 303.14795 * 28 22 2 50 50 H 1.08994 * 109.48971 * 63.21678 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.2676 -1.8995 1.1905 6 7 2.2255 -0.0234 2.3736 7 6 2.0464 1.4305 2.3937 8 6 0.6153 1.7556 2.7362 9 1 -0.0901 0.9589 2.9209 10 6 0.2065 3.0701 2.8137 11 7 1.0656 4.0402 2.5892 12 14 -1.5672 3.4730 3.2390 13 1 -1.8945 2.9161 4.5761 14 1 -1.7489 4.9468 3.2591 15 1 -2.4683 2.8767 2.2202 16 6 2.6147 -0.7303 3.5963 17 6 4.1146 -0.6980 3.7395 18 6 4.8305 0.2957 4.2957 19 6 6.1896 -0.0864 4.2196 20 6 6.2228 -1.2910 3.6220 21 8 4.9627 -1.6592 3.3389 22 7 2.0196 -0.6925 -1.1995 23 6 3.4886 -0.7008 -1.2401 24 6 3.9582 -1.4979 -2.4593 25 7 3.4039 -0.8941 -3.6792 26 6 3.8935 -1.5865 -4.8786 27 6 1.9349 -0.8857 -3.6386 28 6 1.4654 -0.0886 -2.4193 29 1 -0.3633 0.5942 0.8384 30 1 -0.3634 0.4290 -0.9337 31 1 -0.3633 -1.0232 0.0954 32 1 2.7074 1.8678 3.1419 33 1 2.2871 1.8398 1.4125 34 1 0.7781 4.9650 2.6441 35 1 2.1570 -0.2447 4.4581 36 1 2.2773 -1.7653 3.5407 37 1 4.4418 1.2105 4.7182 38 1 7.0382 0.4802 4.5734 39 1 7.1119 -1.8663 3.4096 40 1 3.8563 0.3229 -1.3112 41 1 3.8748 -1.1639 -0.3320 42 1 3.6135 -2.5284 -2.3748 43 1 5.0469 -1.4813 -2.5078 44 1 3.5222 -1.0782 -5.7686 45 1 4.9835 -1.5780 -4.8836 46 1 3.5381 -2.6169 -4.8738 47 1 1.5673 -1.9094 -3.5674 48 1 1.5484 -0.4228 -4.5465 49 1 0.3766 -0.1056 -2.3710 50 1 1.8100 0.9420 -2.5038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273344034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:59 Heat of formation + Delta-G solvation = -10.746540 kcal Electronic energy + Delta-G solvation = -30933.024802 eV Core-core repulsion = 26961.938158 eV Total energy + Delta-G solvation = -3971.086644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46648 -41.36601 -39.78617 -37.00132 -36.62498 -34.66282 -33.86570 -32.75659 -32.05351 -31.25443 -29.17959 -28.40077 -27.31936 -25.42729 -24.85760 -24.42830 -23.29319 -22.61591 -21.50492 -20.82722 -19.90196 -18.73083 -18.27399 -17.98867 -17.74242 -17.10874 -16.58799 -16.30125 -16.22255 -16.05672 -15.80770 -15.75076 -15.20656 -15.11433 -14.88900 -14.47598 -14.26896 -13.89917 -13.72780 -13.70224 -13.59954 -13.41857 -13.13803 -13.09642 -13.03368 -12.79946 -12.68704 -12.59756 -12.51274 -12.32771 -12.28330 -11.96539 -11.87089 -11.69267 -11.63354 -10.86086 -10.67912 -10.51560 -9.67015 -9.44952 -9.38233 -9.26031 -8.17328 -6.30437 0.72908 1.46645 1.47943 1.54529 1.61862 1.70063 2.13366 2.31312 2.45101 2.90367 2.96128 3.14146 3.60421 3.82822 3.84763 4.03709 4.06448 4.12166 4.15193 4.18293 4.22694 4.36858 4.38037 4.39537 4.48357 4.56177 4.61212 4.67087 4.73420 4.81369 4.82449 4.86452 4.89548 4.92250 4.95063 5.00873 5.02789 5.06061 5.19547 5.22619 5.35773 5.59677 5.63392 5.76840 5.84462 5.92600 6.05938 6.10944 6.13024 6.23860 6.51560 6.81434 7.28378 7.41848 8.88916 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.005191 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.456145 B = 5392.311645 C = 8143.377522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.052 0.948 4 C 0.523 3.477 5 O -0.569 6.569 6 N -0.594 5.594 7 C 0.257 3.743 8 C -0.536 4.536 9 H 0.063 0.937 10 C 0.027 3.973 11 N -0.920 5.920 12 Si 0.951 3.049 13 H -0.272 1.272 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.196 3.804 17 C -0.043 4.043 18 C -0.206 4.206 19 C -0.223 4.223 20 C -0.043 4.043 21 O -0.191 6.191 22 N -0.525 5.525 23 C 0.061 3.939 24 C 0.072 3.928 25 N -0.558 5.558 26 C 0.027 3.973 27 C 0.064 3.936 28 C 0.051 3.949 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.172 0.828 39 H 0.240 0.760 40 H 0.026 0.974 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.027 0.973 47 H 0.039 0.961 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -7.896 -7.597 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 H 0.069 0.931 4 C 0.312 3.688 5 O -0.449 6.449 6 N -0.325 5.325 7 C 0.136 3.864 8 C -0.574 4.574 9 H 0.081 0.919 10 C -0.174 4.174 11 N -0.559 5.559 12 Si 0.776 3.224 13 H -0.197 1.197 14 H -0.213 1.213 15 H -0.191 1.191 16 C 0.073 3.927 17 C -0.094 4.094 18 C -0.226 4.226 19 C -0.242 4.242 20 C -0.110 4.110 21 O -0.087 6.087 22 N -0.251 5.251 23 C -0.067 4.067 24 C -0.056 4.056 25 N -0.283 5.283 26 C -0.120 4.120 27 C -0.064 4.064 28 C -0.077 4.077 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.163 0.837 38 H 0.190 0.810 39 H 0.256 0.744 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.121 0.879 49 H 0.116 0.884 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.996 -8.577 -7.763 13.030 hybrid contribution -0.559 0.911 0.749 1.306 sum 5.437 -7.666 -7.013 11.727 Atomic orbital electron populations 1.21823 0.90796 1.02466 1.04201 1.21448 0.98370 0.95075 0.88285 0.93065 1.20638 0.76400 0.86826 0.84963 1.90584 1.52958 1.16408 1.84915 1.48290 1.65810 1.09862 1.08572 1.19112 0.96458 0.73888 0.96926 1.21547 0.95389 0.92155 1.48344 0.91906 1.25583 1.01101 0.95985 0.94711 1.70018 1.36309 1.00124 1.49495 0.85709 0.80564 0.76899 0.79182 1.19724 1.21276 1.19118 1.19694 0.84902 0.99170 0.88977 1.23033 0.93616 0.89707 1.03014 1.21862 0.94373 1.00465 1.05874 1.22136 0.97383 0.98151 1.06550 1.24857 0.85695 0.98217 1.02251 1.84073 1.17234 1.42700 1.64708 1.61978 1.07750 1.54075 1.01322 1.22067 0.87731 0.98430 0.98513 1.21989 0.99754 0.95539 0.88331 1.62192 1.08487 1.54747 1.02910 1.22392 1.01285 0.96387 0.91956 1.22169 0.87187 0.99179 0.97839 1.22377 1.00765 0.96209 0.88334 0.90629 0.89872 0.92410 0.95973 0.96284 0.92450 0.86520 0.89550 0.83686 0.81020 0.74416 0.95597 0.92503 0.94707 0.89203 0.89916 0.90667 0.95392 0.94274 0.87928 0.88395 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.98 71.98 0.65 -4.21 16 2 C 0.08 3.10 1.92 44.17 0.08 3.19 16 3 H 0.05 2.23 5.87 -2.39 -0.01 2.21 16 4 C 0.52 22.63 5.78 87.66 0.51 23.14 16 5 O -0.57 -26.70 15.20 -3.01 -0.05 -26.74 16 6 N -0.59 -25.46 2.44 -830.51 -2.03 -27.49 16 7 C 0.26 12.11 4.95 85.63 0.42 12.53 16 8 C -0.54 -26.28 7.63 25.60 0.20 -26.09 16 9 H 0.06 3.07 7.40 -2.91 -0.02 3.04 16 10 C 0.03 1.35 5.46 84.65 0.46 1.81 16 11 N -0.92 -49.40 13.29 21.45 0.28 -49.12 16 12 Si 0.95 39.99 29.54 68.60 2.03 42.01 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 16 C 0.20 7.53 5.95 85.63 0.51 8.04 16 17 C -0.04 -1.58 6.90 24.83 0.17 -1.41 16 18 C -0.21 -7.04 10.73 22.19 0.24 -6.80 16 19 C -0.22 -6.25 10.91 22.19 0.24 -6.01 16 20 C -0.04 -1.16 12.09 66.97 0.81 -0.35 16 21 O -0.19 -6.85 10.65 -2.46 -0.03 -6.87 16 22 N -0.53 -18.38 4.29 -874.85 -3.76 -22.13 16 23 C 0.06 2.12 5.29 86.31 0.46 2.57 16 24 C 0.07 2.01 5.62 86.31 0.49 2.50 16 25 N -0.56 -13.75 4.97 -921.95 -4.58 -18.33 16 26 C 0.03 0.49 9.60 127.69 1.23 1.72 16 27 C 0.06 1.52 5.62 86.31 0.49 2.01 16 28 C 0.05 1.44 5.23 86.31 0.45 1.90 16 29 H 0.07 3.02 5.76 -2.39 -0.01 3.01 16 30 H 0.08 2.53 5.97 -2.39 -0.01 2.51 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.02 1.11 8.00 -2.39 -0.02 1.09 16 33 H 0.02 0.98 5.89 -2.39 -0.01 0.97 16 34 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.12 4.19 8.11 -2.39 -0.02 4.17 16 36 H 0.09 3.34 7.35 -2.39 -0.02 3.32 16 37 H 0.15 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 2.26 6.37 -2.38 -0.02 2.25 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 46 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.10 2.52 5.94 -2.39 -0.01 2.51 16 50 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -62.90 394.88 0.19 -62.70 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.92 Total: 31.43 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 7.39 Total: 14.54 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -10.08 Total: -117.07 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.07 Total: -33.61 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -62.90 0.19 -62.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273344034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.956 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds