Wall clock time and date at job start Tue Mar 31 2020 19:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50699 * 109.47383 * 240.00183 * 2 1 3 5 5 O 1.21276 * 120.00168 * 265.82118 * 4 2 1 6 6 N 1.34787 * 119.99594 * 85.81479 * 4 2 1 7 7 C 1.46493 * 120.00016 * 353.60460 * 6 4 2 8 8 C 1.50695 * 109.47333 * 84.16933 * 7 6 4 9 9 H 1.08000 * 119.99882 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00260 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99594 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00161 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47104 * 60.00141 * 12 10 8 14 14 H 1.48502 * 109.47141 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47297 * 300.00122 * 12 10 8 16 16 C 1.46497 * 119.99571 * 173.60380 * 6 4 2 17 17 C 1.50700 * 109.47451 * 89.99885 * 16 6 4 18 18 C 1.34517 * 125.78614 * 89.99701 * 17 16 6 19 19 C 1.41389 * 106.83854 * 180.02562 * 18 17 16 20 20 C 1.34519 * 106.83873 * 359.97438 * 19 18 17 21 21 O 1.34300 * 125.79186 * 269.69212 * 17 16 6 22 22 N 1.46901 * 109.46954 * 120.00264 * 2 1 3 23 23 C 1.46954 * 111.00084 * 284.91879 * 22 2 1 24 24 C 1.53052 * 109.36427 * 183.19166 * 23 22 2 25 25 N 1.46954 * 109.36275 * 301.59917 * 24 23 22 26 26 C 1.46901 * 111.00022 * 183.19111 * 25 24 23 27 27 C 1.46954 * 110.88171 * 59.32113 * 25 24 23 28 28 C 1.46954 * 111.00022 * 48.72077 * 22 2 1 29 29 H 1.08997 * 109.47035 * 293.44666 * 1 2 3 30 30 H 1.09006 * 109.46945 * 53.44941 * 1 2 3 31 31 H 1.08999 * 109.46954 * 173.44875 * 1 2 3 32 32 H 1.09005 * 109.46693 * 204.16322 * 7 6 4 33 33 H 1.08997 * 109.47550 * 324.16211 * 7 6 4 34 34 H 0.97002 * 119.99488 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.47272 * 210.00341 * 16 6 4 36 36 H 1.09007 * 109.47116 * 329.99768 * 16 6 4 37 37 H 1.07994 * 126.58126 * 0.03888 * 18 17 16 38 38 H 1.07991 * 126.57654 * 179.97438 * 19 18 17 39 39 H 1.07994 * 125.78585 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.49082 * 63.22130 * 23 22 2 41 41 H 1.09000 * 109.50839 * 303.16567 * 23 22 2 42 42 H 1.09001 * 109.48582 * 181.63242 * 24 23 22 43 43 H 1.08999 * 109.50790 * 61.57388 * 24 23 22 44 44 H 1.08997 * 109.47113 * 59.99933 * 26 25 24 45 45 H 1.08998 * 109.46740 * 299.99528 * 26 25 24 46 46 H 1.08999 * 109.46835 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.49082 * 60.64833 * 27 25 24 48 48 H 1.09005 * 109.48990 * 180.71569 * 27 25 24 49 49 H 1.09000 * 109.48654 * 296.78097 * 28 22 2 50 50 H 1.09000 * 109.48722 * 56.82199 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3067 -1.8906 -1.1798 6 7 2.1767 -0.0339 -2.3873 7 6 1.7149 1.3527 -2.4876 8 6 2.7822 2.2770 -1.9610 9 1 3.7115 1.8720 -1.5885 10 6 2.5725 3.6397 -1.9548 11 7 1.4410 4.1329 -2.4089 12 14 3.8953 4.7854 -1.3014 13 1 5.1352 4.6170 -2.1011 14 1 3.4276 6.1911 -1.4043 15 1 4.1749 4.4590 0.1200 16 6 2.7955 -0.6855 -3.5444 17 6 1.7312 -1.3649 -4.3671 18 6 1.0445 -0.8070 -5.3803 19 6 0.1548 -1.7937 -5.8643 20 6 0.3516 -2.8955 -5.1181 21 8 1.3115 -2.6317 -4.2167 22 7 2.0196 -0.6926 1.1994 23 6 1.8622 0.1483 2.3943 24 6 2.4550 -0.5751 3.6057 25 7 1.7772 -1.8671 3.7814 26 6 2.2669 -2.5597 4.9808 27 6 1.9347 -2.7080 2.5866 28 6 1.3418 -1.9846 1.3751 29 1 -0.3633 0.4089 0.9428 30 1 -0.3633 0.6120 -0.8256 31 1 -0.3633 -1.0210 -0.1172 32 1 1.5090 1.5925 -3.5308 33 1 0.8051 1.4761 -1.9001 34 1 1.2936 5.0916 -2.4049 35 1 3.3037 0.0620 -4.1536 36 1 3.5176 -1.4264 -3.2011 37 1 1.1522 0.2009 -5.7528 38 1 -0.5477 -1.6837 -6.6770 39 1 -0.1705 -3.8344 -5.2285 40 1 0.8032 0.3396 2.5674 41 1 2.3829 1.0942 2.2449 42 1 2.3134 0.0342 4.4983 43 1 3.5200 -0.7422 3.4446 44 1 2.0770 -1.9431 5.8593 45 1 3.3381 -2.7371 4.8860 46 1 1.7484 -3.5126 5.0872 47 1 2.9937 -2.8993 2.4135 48 1 1.4137 -3.6537 2.7361 49 1 0.2769 -1.8175 1.5365 50 1 1.4831 -2.5937 0.4823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273344037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:03 Heat of formation + Delta-G solvation = 5.869016 kcal Electronic energy + Delta-G solvation = -30847.354568 eV Core-core repulsion = 26876.988429 eV Total energy + Delta-G solvation = -3970.366140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16366 -39.90574 -38.41620 -35.62876 -35.05115 -32.85382 -32.49810 -31.23155 -30.69558 -29.84462 -27.36921 -27.18798 -25.73793 -24.21197 -23.40121 -23.11210 -22.08374 -21.32889 -20.26796 -19.30835 -18.34080 -17.11772 -16.71887 -16.26954 -15.93931 -15.71913 -15.15322 -14.96912 -14.69378 -14.63146 -14.57168 -14.39977 -14.09557 -13.72224 -13.45776 -12.83166 -12.65591 -12.46882 -12.42378 -12.38663 -12.34770 -12.22723 -11.84493 -11.73066 -11.66936 -11.34746 -11.27478 -11.15519 -10.97332 -10.80862 -10.68127 -10.63464 -10.41602 -10.14628 -9.83789 -9.56923 -8.91671 -8.60997 -8.33211 -8.17328 -7.89390 -7.75935 -6.22968 -4.30783 2.04329 2.91463 3.21871 3.23320 3.27471 3.30632 3.47984 3.89672 4.00721 4.27489 4.46722 5.04219 5.06139 5.09220 5.10683 5.20544 5.33857 5.36243 5.38763 5.43600 5.51404 5.57732 5.63642 5.66310 5.71565 5.77515 5.78922 5.80346 5.95837 6.03126 6.11704 6.12094 6.12884 6.22680 6.28187 6.36552 6.43236 6.43639 6.49573 6.69950 6.84236 7.02422 7.07259 7.15888 7.38405 7.48516 7.51383 7.54575 7.72240 8.00146 8.26521 8.75626 9.00817 9.37439 10.83393 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007677 B = 0.005145 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.487173 B = 5440.435416 C = 8432.984553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 H 0.129 0.871 4 C 0.534 3.466 5 O -0.553 6.553 6 N -0.594 5.594 7 C 0.235 3.765 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.197 3.803 17 C -0.012 4.012 18 C -0.205 4.205 19 C -0.217 4.217 20 C -0.054 4.054 21 O -0.165 6.165 22 N -0.518 5.518 23 C 0.055 3.945 24 C 0.060 3.940 25 N -0.547 5.547 26 C 0.026 3.974 27 C 0.060 3.940 28 C 0.045 3.955 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.266 0.734 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.195 0.805 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 -9.818 4.291 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.046 4.046 3 H 0.147 0.853 4 C 0.322 3.678 5 O -0.432 6.432 6 N -0.325 5.325 7 C 0.116 3.884 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.073 3.927 17 C -0.064 4.064 18 C -0.225 4.225 19 C -0.236 4.236 20 C -0.122 4.122 21 O -0.060 6.060 22 N -0.243 5.243 23 C -0.073 4.073 24 C -0.069 4.069 25 N -0.272 5.272 26 C -0.122 4.122 27 C -0.068 4.068 28 C -0.083 4.083 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.212 0.788 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.055 0.945 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.622 -10.431 4.513 11.481 hybrid contribution 0.373 1.014 0.033 1.081 sum -1.249 -9.417 4.546 10.531 Atomic orbital electron populations 1.22312 0.95736 1.02179 1.03069 1.21712 0.94003 1.00450 0.88436 0.85295 1.20292 0.76911 0.86370 0.84191 1.90510 1.51910 1.15924 1.84859 1.48255 1.59675 1.15432 1.09134 1.19539 0.95520 0.74593 0.98747 1.21471 1.02539 0.91113 1.42862 0.91849 1.24929 0.95626 0.98069 0.94941 1.69917 1.23858 1.13443 1.45417 0.86594 0.81876 0.79557 0.79711 1.20093 1.21204 1.19984 1.19699 0.90208 0.95935 0.86813 1.23268 1.01445 0.82589 0.99117 1.21659 0.99930 1.01156 0.99771 1.21781 1.03895 0.94067 1.03850 1.23943 0.94602 1.00898 0.92778 1.84112 1.43980 1.29356 1.48568 1.62017 1.57038 1.03646 1.01568 1.22180 0.99751 0.96269 0.89099 1.22148 0.96489 0.90463 0.97756 1.62202 1.57132 1.04482 1.03406 1.22320 0.97789 0.99082 0.93030 1.22172 0.99752 0.95608 0.89253 1.22503 0.95581 0.91458 0.98734 0.91919 0.90804 0.92582 0.94372 0.94200 0.92415 0.87180 0.89392 0.83440 0.83951 0.78803 0.93937 0.89918 0.90614 0.94040 0.91644 0.95795 0.91646 0.94126 0.90887 0.94526 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 7.99 37.16 0.30 -2.70 16 2 C 0.07 1.23 1.89 -68.86 -0.13 1.10 16 3 H 0.13 2.70 5.95 -51.93 -0.31 2.39 16 4 C 0.53 11.10 6.77 -10.98 -0.07 11.02 16 5 O -0.55 -12.24 13.69 5.56 0.08 -12.16 16 6 N -0.59 -12.21 2.46 -176.44 -0.43 -12.64 16 7 C 0.24 5.32 4.82 -5.20 -0.03 5.30 16 8 C -0.54 -13.27 8.02 -34.44 -0.28 -13.54 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 12 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 16 C 0.20 3.64 5.86 -5.20 -0.03 3.61 16 17 C -0.01 -0.22 6.90 -35.62 -0.25 -0.47 16 18 C -0.21 -3.41 10.81 -39.70 -0.43 -3.84 16 19 C -0.22 -3.16 10.91 -39.70 -0.43 -3.59 16 20 C -0.05 -0.77 12.09 29.42 0.36 -0.42 16 21 O -0.17 -2.97 10.65 5.72 0.06 -2.91 16 22 N -0.52 -9.05 4.51 -227.88 -1.03 -10.08 16 23 C 0.06 0.84 5.39 -3.77 -0.02 0.82 16 24 C 0.06 0.80 5.62 -3.77 -0.02 0.78 16 25 N -0.55 -7.29 4.97 -242.76 -1.21 -8.49 16 26 C 0.03 0.28 9.60 60.07 0.58 0.85 16 27 C 0.06 0.86 5.62 -3.77 -0.02 0.83 16 28 C 0.05 0.74 4.51 -3.77 -0.02 0.72 16 29 H 0.06 0.99 6.76 -51.93 -0.35 0.64 16 30 H 0.07 1.34 6.26 -51.93 -0.33 1.01 16 31 H 0.06 0.95 6.81 -51.93 -0.35 0.59 16 32 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.04 0.94 5.29 -51.93 -0.27 0.67 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.11 1.87 8.07 -51.93 -0.42 1.46 16 36 H 0.09 1.62 7.52 -51.93 -0.39 1.23 16 37 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 38 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.04 0.64 6.85 -51.93 -0.36 0.29 16 41 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 49 H 0.04 0.59 6.55 -51.93 -0.34 0.25 16 50 H 0.11 2.01 5.54 -51.93 -0.29 1.72 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -28.53 391.63 -9.52 -38.05 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.01 Total: 8.17 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.59 Total: 2.09 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -1.93 Total: -53.92 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.14 Total: -15.07 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.53 -9.52 -38.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273344037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.914 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds