Wall clock time and date at job start Tue Mar 31 2020 19:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50699 * 109.47383 * 240.00183 * 2 1 3 5 5 O 1.21276 * 120.00168 * 265.82118 * 4 2 1 6 6 N 1.34787 * 119.99594 * 85.81479 * 4 2 1 7 7 C 1.46493 * 120.00016 * 353.60460 * 6 4 2 8 8 C 1.50695 * 109.47333 * 84.16933 * 7 6 4 9 9 H 1.08000 * 119.99882 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00260 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99594 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00161 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47104 * 60.00141 * 12 10 8 14 14 H 1.48502 * 109.47141 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47297 * 300.00122 * 12 10 8 16 16 C 1.46497 * 119.99571 * 173.60380 * 6 4 2 17 17 C 1.50700 * 109.47451 * 89.99885 * 16 6 4 18 18 C 1.34517 * 125.78614 * 89.99701 * 17 16 6 19 19 C 1.41389 * 106.83854 * 180.02562 * 18 17 16 20 20 C 1.34519 * 106.83873 * 359.97438 * 19 18 17 21 21 O 1.34300 * 125.79186 * 269.69212 * 17 16 6 22 22 N 1.46901 * 109.46954 * 120.00264 * 2 1 3 23 23 C 1.46954 * 111.00084 * 284.91879 * 22 2 1 24 24 C 1.53052 * 109.36427 * 183.19166 * 23 22 2 25 25 N 1.46954 * 109.36275 * 301.59917 * 24 23 22 26 26 C 1.46901 * 111.00022 * 183.19111 * 25 24 23 27 27 C 1.46954 * 110.88171 * 59.32113 * 25 24 23 28 28 C 1.46954 * 111.00022 * 48.72077 * 22 2 1 29 29 H 1.08997 * 109.47035 * 293.44666 * 1 2 3 30 30 H 1.09006 * 109.46945 * 53.44941 * 1 2 3 31 31 H 1.08999 * 109.46954 * 173.44875 * 1 2 3 32 32 H 1.09005 * 109.46693 * 204.16322 * 7 6 4 33 33 H 1.08997 * 109.47550 * 324.16211 * 7 6 4 34 34 H 0.97002 * 119.99488 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.47272 * 210.00341 * 16 6 4 36 36 H 1.09007 * 109.47116 * 329.99768 * 16 6 4 37 37 H 1.07994 * 126.58126 * 0.03888 * 18 17 16 38 38 H 1.07991 * 126.57654 * 179.97438 * 19 18 17 39 39 H 1.07994 * 125.78585 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.49082 * 63.22130 * 23 22 2 41 41 H 1.09000 * 109.50839 * 303.16567 * 23 22 2 42 42 H 1.09001 * 109.48582 * 181.63242 * 24 23 22 43 43 H 1.08999 * 109.50790 * 61.57388 * 24 23 22 44 44 H 1.08997 * 109.47113 * 59.99933 * 26 25 24 45 45 H 1.08998 * 109.46740 * 299.99528 * 26 25 24 46 46 H 1.08999 * 109.46835 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.49082 * 60.64833 * 27 25 24 48 48 H 1.09005 * 109.48990 * 180.71569 * 27 25 24 49 49 H 1.09000 * 109.48654 * 296.78097 * 28 22 2 50 50 H 1.09000 * 109.48722 * 56.82199 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3067 -1.8906 -1.1798 6 7 2.1767 -0.0339 -2.3873 7 6 1.7149 1.3527 -2.4876 8 6 2.7822 2.2770 -1.9610 9 1 3.7115 1.8720 -1.5885 10 6 2.5725 3.6397 -1.9548 11 7 1.4410 4.1329 -2.4089 12 14 3.8953 4.7854 -1.3014 13 1 5.1352 4.6170 -2.1011 14 1 3.4276 6.1911 -1.4043 15 1 4.1749 4.4590 0.1200 16 6 2.7955 -0.6855 -3.5444 17 6 1.7312 -1.3649 -4.3671 18 6 1.0445 -0.8070 -5.3803 19 6 0.1548 -1.7937 -5.8643 20 6 0.3516 -2.8955 -5.1181 21 8 1.3115 -2.6317 -4.2167 22 7 2.0196 -0.6926 1.1994 23 6 1.8622 0.1483 2.3943 24 6 2.4550 -0.5751 3.6057 25 7 1.7772 -1.8671 3.7814 26 6 2.2669 -2.5597 4.9808 27 6 1.9347 -2.7080 2.5866 28 6 1.3418 -1.9846 1.3751 29 1 -0.3633 0.4089 0.9428 30 1 -0.3633 0.6120 -0.8256 31 1 -0.3633 -1.0210 -0.1172 32 1 1.5090 1.5925 -3.5308 33 1 0.8051 1.4761 -1.9001 34 1 1.2936 5.0916 -2.4049 35 1 3.3037 0.0620 -4.1536 36 1 3.5176 -1.4264 -3.2011 37 1 1.1522 0.2009 -5.7528 38 1 -0.5477 -1.6837 -6.6770 39 1 -0.1705 -3.8344 -5.2285 40 1 0.8032 0.3396 2.5674 41 1 2.3829 1.0942 2.2449 42 1 2.3134 0.0342 4.4983 43 1 3.5200 -0.7422 3.4446 44 1 2.0770 -1.9431 5.8593 45 1 3.3381 -2.7371 4.8860 46 1 1.7484 -3.5126 5.0872 47 1 2.9937 -2.8993 2.4135 48 1 1.4137 -3.6537 2.7361 49 1 0.2769 -1.8175 1.5365 50 1 1.4831 -2.5937 0.4823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273344037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:02 Heat of formation + Delta-G solvation = -12.290724 kcal Electronic energy + Delta-G solvation = -30848.142034 eV Core-core repulsion = 26876.988429 eV Total energy + Delta-G solvation = -3971.153605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.44099 -41.38820 -39.76061 -37.02778 -36.62465 -34.65959 -33.85129 -32.59868 -31.89008 -31.21191 -29.12398 -28.37065 -27.18087 -25.60407 -24.72393 -24.59290 -23.45736 -22.59341 -21.55547 -20.56122 -19.87929 -18.77338 -18.25154 -17.81581 -17.50264 -17.01028 -16.45893 -16.35525 -16.15310 -16.02363 -15.85849 -15.64521 -15.49165 -15.09752 -14.78299 -14.46387 -14.06584 -13.92623 -13.71763 -13.67054 -13.60430 -13.46879 -13.33630 -13.17673 -12.89039 -12.83095 -12.76102 -12.56732 -12.49705 -12.40972 -12.07275 -11.99261 -11.86795 -11.72450 -11.64825 -10.82940 -10.60758 -10.44468 -9.63592 -9.43931 -9.35213 -9.15004 -8.17654 -6.31261 0.75762 1.45367 1.46865 1.53611 1.67382 1.69594 2.15816 2.38233 2.45316 2.97645 3.05980 3.13263 3.64615 3.84960 3.88018 4.11164 4.11894 4.15214 4.17404 4.20410 4.26552 4.32598 4.36811 4.40817 4.56209 4.61460 4.63018 4.65730 4.68441 4.81491 4.85479 4.87407 4.93170 4.94514 4.99329 5.01376 5.04180 5.09742 5.13679 5.21332 5.30067 5.62310 5.66606 5.80960 5.92327 5.97806 6.07649 6.16402 6.21614 6.27024 6.54899 6.82828 7.31454 7.42915 8.87760 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007677 B = 0.005145 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.487173 B = 5440.435416 C = 8432.984553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.107 0.893 4 C 0.528 3.472 5 O -0.569 6.569 6 N -0.596 5.596 7 C 0.254 3.746 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.029 3.971 11 N -0.916 5.916 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.197 3.803 17 C -0.041 4.041 18 C -0.207 4.207 19 C -0.223 4.223 20 C -0.046 4.046 21 O -0.189 6.189 22 N -0.531 5.531 23 C 0.054 3.946 24 C 0.064 3.936 25 N -0.553 5.553 26 C 0.026 3.974 27 C 0.067 3.933 28 C 0.051 3.949 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.238 0.762 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.032 0.968 44 H 0.080 0.920 45 H 0.024 0.976 46 H 0.077 0.923 47 H 0.027 0.973 48 H 0.091 0.909 49 H 0.039 0.961 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -10.451 5.247 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.040 4.040 3 H 0.125 0.875 4 C 0.317 3.683 5 O -0.449 6.449 6 N -0.327 5.327 7 C 0.133 3.867 8 C -0.582 4.582 9 H 0.073 0.927 10 C -0.172 4.172 11 N -0.555 5.555 12 Si 0.776 3.224 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.195 1.195 16 C 0.074 3.926 17 C -0.092 4.092 18 C -0.228 4.228 19 C -0.242 4.242 20 C -0.113 4.113 21 O -0.086 6.086 22 N -0.256 5.256 23 C -0.073 4.073 24 C -0.064 4.064 25 N -0.278 5.278 26 C -0.121 4.121 27 C -0.061 4.061 28 C -0.077 4.077 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.167 0.833 38 H 0.190 0.810 39 H 0.254 0.746 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.118 0.882 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.042 0.958 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.109 0.891 49 H 0.057 0.943 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.111 -11.072 5.470 12.529 hybrid contribution 0.497 1.136 -0.309 1.278 sum -1.613 -9.936 5.161 11.313 Atomic orbital electron populations 1.22198 0.94514 1.02054 1.03330 1.21540 0.94852 0.99010 0.88590 0.87471 1.20669 0.76626 0.86304 0.84688 1.90500 1.52706 1.16547 1.85189 1.48255 1.59635 1.14759 1.10012 1.19172 0.94722 0.75444 0.97344 1.21589 1.02448 0.91627 1.42520 0.92735 1.25548 0.97246 0.99285 0.95124 1.70004 1.25289 1.13716 1.46481 0.85722 0.79598 0.77846 0.79231 1.19923 1.20906 1.19544 1.19719 0.90554 0.95967 0.86398 1.23061 1.02640 0.83253 1.00247 1.21880 0.99934 1.01647 0.99295 1.22137 1.04012 0.93331 1.04724 1.24848 0.92981 1.02420 0.91047 1.84089 1.45225 1.29308 1.49932 1.62022 1.57417 1.04333 1.01790 1.22243 1.00054 0.96094 0.88952 1.22133 0.95688 0.90898 0.97669 1.62223 1.57389 1.04444 1.03780 1.22397 0.97883 0.99733 0.92116 1.22086 0.98904 0.96200 0.88948 1.22381 0.95754 0.90718 0.98813 0.90335 0.92122 0.92397 0.95776 0.95208 0.92357 0.86485 0.89943 0.83337 0.80987 0.74626 0.93624 0.90415 0.88235 0.94974 0.90086 0.95775 0.90431 0.95485 0.89060 0.94313 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 7.99 71.98 0.57 -5.06 16 2 C 0.07 2.77 1.89 44.17 0.08 2.85 16 3 H 0.11 4.63 5.95 -2.38 -0.01 4.61 16 4 C 0.53 22.62 6.77 87.66 0.59 23.21 16 5 O -0.57 -25.92 13.69 -3.02 -0.04 -25.97 16 6 N -0.60 -25.35 2.46 -830.51 -2.04 -27.39 16 7 C 0.25 11.83 4.82 85.63 0.41 12.24 16 8 C -0.54 -27.15 8.02 25.60 0.21 -26.95 16 9 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 10 C 0.03 1.47 5.46 84.65 0.46 1.93 16 11 N -0.92 -48.76 13.29 21.45 0.28 -48.48 16 12 Si 0.95 40.58 29.54 68.60 2.03 42.61 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 C 0.20 7.52 5.86 85.63 0.50 8.02 16 17 C -0.04 -1.49 6.90 24.83 0.17 -1.32 16 18 C -0.21 -6.87 10.81 22.19 0.24 -6.63 16 19 C -0.22 -6.10 10.91 22.19 0.24 -5.86 16 20 C -0.05 -1.23 12.09 66.97 0.81 -0.42 16 21 O -0.19 -6.78 10.65 -2.44 -0.03 -6.81 16 22 N -0.53 -18.64 4.51 -874.87 -3.95 -22.59 16 23 C 0.05 1.62 5.39 86.31 0.47 2.09 16 24 C 0.06 1.62 5.62 86.31 0.49 2.11 16 25 N -0.55 -13.60 4.97 -921.95 -4.58 -18.18 16 26 C 0.03 0.49 9.60 127.69 1.23 1.71 16 27 C 0.07 1.83 5.62 86.31 0.49 2.31 16 28 C 0.05 1.66 4.51 86.31 0.39 2.05 16 29 H 0.08 2.44 6.76 -2.39 -0.02 2.42 16 30 H 0.06 2.25 6.26 -2.38 -0.01 2.24 16 31 H 0.06 1.97 6.81 -2.39 -0.02 1.95 16 32 H 0.02 1.19 8.03 -2.38 -0.02 1.17 16 33 H 0.03 1.46 5.29 -2.39 -0.01 1.45 16 34 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.12 4.16 8.07 -2.39 -0.02 4.14 16 36 H 0.08 3.18 7.52 -2.38 -0.02 3.16 16 37 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.17 3.57 8.06 -2.92 -0.02 3.54 16 39 H 0.24 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.05 1.33 6.85 -2.39 -0.02 1.31 16 41 H 0.08 2.37 8.03 -2.39 -0.02 2.35 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 47 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.09 2.14 8.13 -2.38 -0.02 2.12 16 49 H 0.04 1.23 6.55 -2.39 -0.02 1.22 16 50 H 0.08 3.17 5.54 -2.39 -0.01 3.15 16 Total: -1.00 -61.47 391.63 -0.05 -61.52 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.93 Total: 32.99 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 7.35 Total: 12.30 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -10.28 Total: -116.64 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.07 Total: -32.78 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.47 -0.05 -61.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273344037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.228 kcal (2) G-P(sol) polarization free energy of solvation -61.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds