Wall clock time and date at job start Tue Mar 31 2020 19:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.46960 * 2 1 4 4 C 1.46500 * 119.99944 * 90.00067 * 3 2 1 5 5 C 1.53007 * 109.46920 * 269.99986 * 4 3 2 6 6 C 1.52999 * 109.46771 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47001 * 179.97438 * 6 5 4 8 8 C 1.53346 * 109.41904 * 295.13027 * 7 6 5 9 9 C 1.53195 * 109.14901 * 178.67276 * 8 7 6 10 10 N 1.46919 * 108.89273 * 54.57640 * 9 8 7 11 11 C 1.34778 * 120.63255 * 126.34238 * 10 9 8 12 12 O 1.21279 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.47205 * 109.47220 * 180.02562 * 13 11 10 15 15 N 9.69030 * 144.30238 * 176.13664 * 5 1 2 16 16 C 1.46933 * 118.74003 * 306.32349 * 10 9 8 17 17 C 1.53034 * 109.46014 * 174.99893 * 7 6 5 18 18 C 1.34774 * 120.00060 * 269.99911 * 3 2 1 19 19 O 1.21686 * 120.00291 * 179.97438 * 18 3 2 20 20 C 1.46373 * 119.99929 * 0.02562 * 18 3 2 21 21 H 1.08000 * 120.00069 * 359.97438 * 20 18 3 22 22 C 1.40048 * 120.00310 * 180.02562 * 20 18 3 23 23 N 1.30676 * 119.99557 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00278 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47007 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47141 * 119.99842 * 24 22 20 27 27 H 1.48501 * 109.46896 * 239.99902 * 24 22 20 28 28 H 1.08995 * 109.46934 * 300.00273 * 1 2 3 29 29 H 1.08994 * 109.46895 * 59.99860 * 1 2 3 30 30 H 1.08995 * 109.46458 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47372 * 240.00030 * 2 1 3 32 32 H 1.08996 * 109.47016 * 119.99371 * 2 1 3 33 33 H 1.09001 * 109.47353 * 150.00188 * 4 3 2 34 34 H 1.08999 * 109.47174 * 29.99505 * 4 3 2 35 35 H 1.08991 * 109.46957 * 60.00044 * 5 4 3 36 36 H 1.08999 * 109.46804 * 299.99745 * 5 4 3 37 37 H 1.09001 * 109.47533 * 60.00182 * 6 5 4 38 38 H 1.08997 * 109.47446 * 299.99849 * 6 5 4 39 39 H 1.09001 * 109.45799 * 55.03056 * 7 6 5 40 40 H 1.08997 * 109.68637 * 58.70485 * 8 7 6 41 41 H 1.09002 * 109.47277 * 298.50741 * 8 7 6 42 42 H 1.09002 * 109.58720 * 294.71670 * 9 8 7 43 43 H 1.08996 * 109.58651 * 174.43567 * 9 8 7 44 44 H 1.09001 * 109.47488 * 299.99559 * 13 11 10 45 45 H 1.09001 * 109.47269 * 59.99982 * 13 11 10 46 46 H 1.08994 * 109.58580 * 173.39910 * 16 10 9 47 47 H 1.09006 * 109.57831 * 293.67403 * 16 10 9 48 48 H 1.08994 * 109.50232 * 61.43679 * 17 7 6 49 49 H 1.09007 * 109.52628 * 301.35340 * 17 7 6 50 50 H 0.97001 * 119.99580 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9874 2.7931 1.7104 6 6 1.2426 3.5149 3.0351 7 6 -0.0322 4.2366 3.4765 8 6 -0.3684 5.3409 2.4670 9 6 -1.6634 6.0374 2.8969 10 7 -1.5139 6.5077 4.2807 11 6 -1.7478 7.7968 4.5970 12 8 -2.0848 8.5811 3.7355 13 6 -1.5907 8.2637 6.0212 14 6 -1.9018 9.7001 6.1039 15 7 -2.1424 10.8064 6.1707 16 6 -1.1049 5.5459 5.3135 17 6 0.1844 4.8539 4.8599 18 6 2.2430 2.0166 -1.1672 19 8 2.6481 3.1641 -1.1672 20 6 1.9985 1.3268 -2.4348 21 1 1.6386 0.3086 -2.4348 22 6 2.2324 1.9868 -3.6477 23 7 2.6685 3.2186 -3.6477 24 14 1.9198 1.1066 -5.2654 25 1 1.4322 -0.2695 -4.9940 26 1 0.8969 1.8502 -6.0438 27 1 3.1823 1.0393 -6.0444 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.0644 2.7986 1.1384 34 1 2.5505 1.3452 2.0284 35 1 0.1856 2.0664 1.8407 36 1 0.6994 3.5198 0.9507 37 1 2.0444 4.2417 2.9044 38 1 1.5310 2.7886 3.7950 39 1 -0.8558 3.5240 3.5218 40 1 -0.5010 4.9052 1.4768 41 1 0.4436 6.0676 2.4395 42 1 -2.4938 5.3338 2.8378 43 1 -1.8566 6.8865 2.2413 44 1 -2.2731 7.7070 6.6635 45 1 -0.5647 8.0944 6.3480 46 1 -0.9272 6.0710 6.2519 47 1 -1.8909 4.8037 5.4532 48 1 0.9913 5.5849 4.8099 49 1 0.4465 4.0708 5.5714 50 1 2.8301 3.6759 -4.4877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274800552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:31 Heat of formation + Delta-G solvation = -88.119209 kcal Electronic energy + Delta-G solvation = -28913.175959 eV Core-core repulsion = 24938.734184 eV Total energy + Delta-G solvation = -3974.441775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34753 -39.90151 -38.97062 -37.50964 -36.62625 -35.54089 -34.63027 -33.10478 -32.43854 -31.18277 -30.48947 -28.84415 -27.20809 -24.61448 -24.35187 -23.88323 -22.46805 -21.44591 -20.87707 -20.25380 -18.60550 -18.37811 -18.21966 -17.73186 -16.88697 -16.60326 -16.40767 -16.21382 -15.64267 -15.41763 -15.19283 -15.10650 -14.80497 -14.60167 -14.49047 -14.24220 -14.23740 -13.95492 -13.83549 -13.55214 -13.40098 -13.20695 -13.08484 -13.04932 -12.76982 -12.70120 -12.64136 -12.49788 -12.40774 -12.11648 -12.08941 -11.95126 -11.83784 -11.57260 -11.35738 -11.27590 -11.09645 -10.93465 -10.83235 -9.72148 -9.65470 -9.00562 -8.26010 -6.79281 1.38012 1.38379 1.43679 1.52524 1.55587 1.79124 2.21519 2.23913 2.49813 2.94321 2.95098 3.53872 3.66268 3.85479 3.87698 3.93850 4.14982 4.20623 4.34634 4.39015 4.41268 4.43107 4.45756 4.51887 4.62413 4.65826 4.73080 4.75205 4.81132 4.82760 4.87047 4.97653 5.03131 5.07210 5.12530 5.16710 5.18720 5.25156 5.27322 5.38329 5.42883 5.52713 5.58394 5.63004 5.66660 5.87741 6.21785 6.34604 6.54491 6.57883 6.91555 7.07887 7.50619 8.53520 8.72732 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.002199 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.912942 B =12729.211723 C =13682.852999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 N -0.646 5.646 4 C 0.124 3.876 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.079 4.079 8 C -0.128 4.128 9 C 0.116 3.884 10 N -0.600 5.600 11 C 0.512 3.488 12 O -0.599 6.599 13 C -0.034 4.034 14 C 0.241 3.759 15 N -0.490 5.490 16 C 0.097 3.903 17 C -0.128 4.128 18 C 0.541 3.459 19 O -0.633 6.633 20 C -0.564 4.564 21 H 0.091 0.909 22 C 0.027 3.973 23 N -0.825 5.825 24 Si 0.989 3.011 25 H -0.243 1.243 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.193 0.807 45 H 0.186 0.814 46 H 0.134 0.866 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.108 0.892 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -5.987 24.462 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.005 4.005 3 N -0.381 5.381 4 C 0.001 3.999 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.098 4.098 8 C -0.167 4.167 9 C -0.007 4.007 10 N -0.332 5.332 11 C 0.300 3.700 12 O -0.480 6.480 13 C -0.075 4.075 14 C -0.077 4.077 15 N -0.167 5.167 16 C -0.023 4.023 17 C -0.166 4.166 18 C 0.347 3.653 19 O -0.521 6.521 20 C -0.601 4.601 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.455 5.455 24 Si 0.809 3.191 25 H -0.166 1.166 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.210 0.790 45 H 0.203 0.797 46 H 0.152 0.848 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.127 0.873 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.655 -3.195 24.060 25.768 hybrid contribution 0.270 -0.039 -1.870 1.890 sum -8.385 -3.234 22.190 23.941 Atomic orbital electron populations 1.22150 0.96195 1.02147 1.01106 1.21396 0.94500 0.82401 1.02172 1.47961 1.70407 1.14660 1.05083 1.21218 0.96965 0.96039 0.85688 1.21933 0.97997 0.98830 0.97159 1.21525 0.97571 0.99084 0.95854 1.21181 0.97786 0.95845 0.94960 1.21998 0.96939 0.98256 0.99481 1.21467 0.97680 0.98675 0.82873 1.48188 1.66607 1.08585 1.09845 1.20806 0.76489 0.81746 0.90959 1.90794 1.49729 1.54960 1.52514 1.19637 1.10837 0.82252 0.94747 1.28934 0.91903 0.95209 0.91629 1.81148 1.10723 1.14994 1.09858 1.22313 0.97003 0.92411 0.90608 1.22005 0.97814 1.01040 0.95703 1.18573 0.76967 0.85340 0.84425 1.90545 1.52877 1.20926 1.87720 1.21549 1.47300 1.01304 0.89948 0.89094 1.26973 0.91888 0.94990 1.04925 1.70221 1.34197 1.12593 1.28495 0.85092 0.78512 0.79540 0.75945 1.16598 1.19726 1.19539 0.92183 0.95229 0.90018 0.91936 0.89519 0.95141 0.89216 0.90956 0.96108 0.93915 0.89073 0.89673 0.93028 0.93757 0.89722 0.92235 0.78984 0.79707 0.84836 0.88526 0.91976 0.87338 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 10.24 71.98 0.74 -3.88 16 2 C 0.12 3.98 5.88 86.38 0.51 4.48 16 3 N -0.65 -28.24 2.47 -826.89 -2.04 -30.28 16 4 C 0.12 4.52 5.45 86.38 0.47 4.99 16 5 C -0.12 -3.69 5.30 30.60 0.16 -3.53 16 6 C -0.10 -2.15 4.68 30.60 0.14 -2.00 16 7 C -0.08 -1.24 2.15 -10.66 -0.02 -1.26 16 8 C -0.13 -2.97 5.16 30.78 0.16 -2.81 16 9 C 0.12 2.32 6.42 86.36 0.55 2.88 16 10 N -0.60 -7.79 2.97 -818.91 -2.43 -10.22 16 11 C 0.51 8.28 7.68 87.66 0.67 8.96 16 12 O -0.60 -17.83 15.44 -3.03 -0.05 -17.88 16 13 C -0.03 -0.15 4.53 28.04 0.13 -0.02 16 14 C 0.24 4.13 14.66 89.47 1.31 5.44 16 15 N -0.49 -12.75 18.52 19.98 0.37 -12.38 16 16 C 0.10 0.27 6.34 86.36 0.55 0.81 16 17 C -0.13 -0.91 5.36 30.67 0.16 -0.74 16 18 C 0.54 31.24 7.61 86.36 0.66 31.90 16 19 O -0.63 -42.75 14.60 -4.30 -0.06 -42.81 16 20 C -0.56 -31.78 8.74 24.83 0.22 -31.56 16 21 H 0.09 4.59 6.00 -2.91 -0.02 4.57 16 22 C 0.03 1.50 5.50 85.30 0.47 1.97 16 23 N -0.82 -51.47 11.83 21.84 0.26 -51.21 16 24 Si 0.99 41.43 29.56 68.60 2.03 43.46 16 25 H -0.24 -9.27 7.11 99.48 0.71 -8.56 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H 0.06 1.58 6.26 -2.39 -0.01 1.57 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.28 6.09 -2.39 -0.01 2.27 16 32 H 0.09 2.24 7.89 -2.39 -0.02 2.22 16 33 H 0.03 1.33 7.42 -2.39 -0.02 1.31 16 34 H 0.09 2.49 7.89 -2.39 -0.02 2.47 16 35 H 0.07 1.95 6.26 -2.39 -0.01 1.94 16 36 H 0.02 0.83 6.53 -2.39 -0.02 0.81 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.52 6.52 -2.39 -0.02 1.51 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.59 7.00 -2.39 -0.02 1.58 16 44 H 0.19 -1.13 7.94 -2.39 -0.02 -1.15 16 45 H 0.19 -0.77 7.69 -2.39 -0.02 -0.79 16 46 H 0.13 -0.83 5.93 -2.39 -0.01 -0.85 16 47 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.11 0.24 8.14 -2.38 -0.02 0.23 16 50 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -98.96 401.59 5.89 -93.08 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.94 Total: 12.62 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.88 Total: 15.63 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.85 Total: -104.10 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -0.11 Total: -60.69 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -98.96 5.89 -93.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274800552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.957 kcal (2) G-P(sol) polarization free energy of solvation -98.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds