Wall clock time and date at job start Tue Mar 31 2020 19:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47375 * 2 1 4 4 C 1.46494 * 119.99802 * 270.00042 * 3 2 1 5 5 C 1.53001 * 109.47043 * 269.99885 * 4 3 2 6 6 C 1.53002 * 109.47076 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47063 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99959 * 66.04890 * 7 6 5 9 9 C 1.46896 * 110.99935 * 189.99861 * 7 6 5 10 10 C 1.34772 * 119.99647 * 89.99469 * 3 2 1 11 11 O 1.21596 * 119.99630 * 179.97438 * 10 3 2 12 12 N 1.34774 * 120.00536 * 0.02562 * 10 3 2 13 13 C 1.39945 * 120.00303 * 174.68698 * 12 10 3 14 14 C 1.38957 * 120.03274 * 326.34550 * 13 12 10 15 15 C 1.38162 * 120.06560 * 180.02562 * 14 13 12 16 16 C 1.38174 * 120.13691 * 359.72203 * 15 14 13 17 17 C 1.38902 * 120.06833 * 0.55244 * 16 15 14 18 18 O 1.35755 * 120.03346 * 179.72219 * 17 16 15 19 19 C 1.34827 * 116.99851 * 173.82281 * 18 17 16 20 20 H 1.07999 * 120.00285 * 354.59576 * 19 18 17 21 21 C 1.38656 * 120.00065 * 174.59479 * 19 18 17 22 22 N 1.31559 * 119.99739 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00454 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46805 * 60.00093 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47015 * 300.00557 * 23 21 19 27 27 C 1.38706 * 120.03707 * 146.36285 * 13 12 10 28 28 H 1.09004 * 109.46687 * 60.00062 * 1 2 3 29 29 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47102 * 300.00133 * 1 2 3 31 31 H 1.09003 * 109.47102 * 239.99867 * 2 1 3 32 32 H 1.09004 * 109.46687 * 119.99938 * 2 1 3 33 33 H 1.09005 * 109.47360 * 30.00075 * 4 3 2 34 34 H 1.09002 * 109.47111 * 149.99577 * 4 3 2 35 35 H 1.08999 * 109.46833 * 299.99671 * 5 4 3 36 36 H 1.08991 * 109.47150 * 60.00324 * 5 4 3 37 37 H 1.09005 * 109.47131 * 300.00070 * 6 5 4 38 38 H 1.09002 * 109.47306 * 59.99552 * 6 5 4 39 39 H 1.08996 * 109.47041 * 59.99434 * 8 7 6 40 40 H 1.08991 * 109.47419 * 180.02562 * 8 7 6 41 41 H 1.09005 * 109.46453 * 299.99921 * 8 7 6 42 42 H 1.09000 * 109.47289 * 60.00467 * 9 7 6 43 43 H 1.08998 * 109.47236 * 180.02562 * 9 7 6 44 44 H 1.09004 * 109.47410 * 300.00289 * 9 7 6 45 45 H 0.96999 * 119.99569 * 354.68522 * 12 10 3 46 46 H 1.07991 * 119.97018 * 359.97438 * 14 13 12 47 47 H 1.08002 * 119.93094 * 179.97438 * 15 14 13 48 48 H 1.08002 * 119.96102 * 180.27619 * 16 15 14 49 49 H 0.96999 * 120.00227 * 179.97438 * 22 21 19 50 50 H 1.08000 * 120.06661 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 3.9628 2.5530 -3.0351 7 7 5.3504 2.3226 -3.4588 8 6 5.5737 0.9074 -3.7833 9 6 5.7042 3.1850 -4.5941 10 6 2.2430 2.0165 1.1672 11 8 2.6488 3.1627 1.1672 12 7 2.0187 1.3811 2.3344 13 6 2.3562 1.9992 3.5438 14 6 3.4639 2.8354 3.6121 15 6 3.7980 3.4455 4.8058 16 6 3.0290 3.2310 5.9336 17 6 1.9239 2.3917 5.8731 18 8 1.1722 2.1769 6.9830 19 6 0.0433 1.4564 6.8276 20 1 -0.2725 1.1536 5.8402 21 6 -0.7124 1.1042 7.9355 22 7 -0.3279 1.4735 9.1383 23 14 -2.2769 0.1066 7.7203 24 1 -1.9510 -1.1933 7.0804 25 1 -2.8951 -0.1372 9.0483 26 1 -3.2279 0.8566 6.8611 27 6 1.5856 1.7774 4.6756 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.2820 2.1693 -3.7950 38 1 3.7959 3.6222 -2.9044 39 1 4.9070 0.6107 -4.5930 40 1 6.6087 0.7646 -4.0935 41 1 5.3709 0.2966 -2.9035 42 1 5.5964 4.2302 -4.3039 43 1 6.7363 2.9938 -4.8879 44 1 5.0423 2.9709 -5.4333 45 1 1.6234 0.4953 2.3362 46 1 4.0647 3.0079 2.7314 47 1 4.6596 4.0948 4.8565 48 1 3.2902 3.7129 6.8642 49 1 -0.8567 1.2274 9.9134 50 1 0.7242 1.1280 4.6249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276374837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:18 Heat of formation + Delta-G solvation = -16.024858 kcal Electronic energy + Delta-G solvation = -28833.358227 eV Core-core repulsion = 24862.042698 eV Total energy + Delta-G solvation = -3971.315530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60435 -38.86785 -38.05406 -36.81450 -35.86918 -34.37086 -32.69277 -32.17910 -30.33150 -29.25557 -28.45274 -27.95160 -26.39092 -25.25275 -23.71034 -23.35983 -21.76132 -21.53249 -21.04552 -19.55134 -18.41005 -17.86561 -17.25927 -16.38236 -15.93288 -15.77446 -15.46213 -15.02501 -14.96242 -14.78002 -14.51096 -14.22242 -14.12227 -14.01976 -13.91946 -13.49002 -13.07300 -12.92160 -12.80482 -12.69336 -12.32538 -12.30572 -12.09589 -11.99683 -11.76693 -11.68701 -11.62581 -11.55472 -11.40772 -11.06626 -10.98102 -10.78771 -10.70835 -10.43283 -9.94693 -9.56797 -9.44608 -8.83289 -8.76136 -8.71077 -7.64977 -7.08338 -6.41855 -4.01372 2.10999 2.44628 2.60498 3.12507 3.13746 3.16879 3.32462 3.61998 3.89579 3.98158 4.59193 4.60145 4.65485 4.77239 4.77632 4.89940 4.98796 5.01195 5.07028 5.13899 5.17523 5.20786 5.26234 5.29872 5.32791 5.46866 5.48239 5.51575 5.52511 5.57369 5.72909 5.87621 5.92316 6.03709 6.07007 6.14480 6.26609 6.31729 6.43972 6.62068 6.66145 6.68991 6.84577 7.06055 7.15008 7.27474 7.39333 7.47627 7.88265 7.99772 8.02982 8.67468 9.03486 9.75056 10.76257 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002362 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.650301 B =11853.446303 C =13105.324405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 N -0.629 5.629 4 C 0.136 3.864 5 C -0.132 4.132 6 C 0.059 3.941 7 N -0.547 5.547 8 C 0.022 3.978 9 C 0.025 3.975 10 C 0.705 3.295 11 O -0.566 6.566 12 N -0.682 5.682 13 C 0.198 3.802 14 C -0.203 4.203 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.169 3.831 18 O -0.177 6.177 19 C -0.391 4.391 20 H 0.089 0.911 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.939 3.061 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.271 1.271 27 C -0.258 4.258 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.401 0.599 46 H 0.120 0.880 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.270 0.730 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -4.282 -25.603 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 N -0.366 5.366 4 C 0.012 3.988 5 C -0.171 4.171 6 C -0.070 4.070 7 N -0.271 5.271 8 C -0.126 4.126 9 C -0.124 4.124 10 C 0.408 3.592 11 O -0.442 6.442 12 N -0.330 5.330 13 C 0.105 3.895 14 C -0.224 4.224 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.106 0.894 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.764 3.236 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.280 4.280 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.237 0.763 46 H 0.138 0.862 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.080 0.920 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.340 -3.289 -24.780 25.789 hybrid contribution -1.643 -1.370 -0.916 2.327 sum 4.697 -4.659 -25.696 26.534 Atomic orbital electron populations 1.22268 0.95682 1.02516 1.03003 1.21525 0.94586 0.82715 1.03155 1.47162 1.70395 1.14198 1.04878 1.21222 0.95400 0.98747 0.83400 1.21984 0.97477 1.00465 0.97202 1.22060 0.87790 1.01200 0.95941 1.61937 1.23294 1.05877 1.36012 1.22436 1.01117 0.88916 1.00179 1.22382 1.00721 0.97854 0.91414 1.15845 0.78782 0.84430 0.80184 1.90946 1.51500 1.16022 1.85741 1.42764 1.65792 1.20579 1.03856 1.17199 0.93561 0.95562 0.83222 1.20569 0.98888 1.04609 0.98379 1.20530 0.98048 0.97861 0.91714 1.20234 0.97944 1.04715 0.99338 1.19061 0.90589 0.92196 0.86669 1.84020 1.32436 1.63877 1.27729 1.21200 0.97894 1.32867 0.94735 0.89401 1.25261 0.99362 0.97605 0.94291 1.70027 1.38563 1.43206 0.98011 0.85815 0.80300 0.79543 0.77941 1.19621 1.20300 1.19587 1.20768 1.03978 1.10335 0.92940 0.92152 0.91266 0.91999 0.90079 0.90666 0.90929 0.89570 0.90266 0.91991 0.94886 0.90398 0.95785 0.91498 0.91049 0.91197 0.91384 0.95792 0.76260 0.86221 0.86669 0.86444 0.92028 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.10 0.83 5.85 -4.04 -0.02 0.81 16 3 N -0.63 -7.07 2.47 -179.42 -0.44 -7.51 16 4 C 0.14 1.30 5.41 -4.04 -0.02 1.28 16 5 C -0.13 -1.21 5.46 -26.73 -0.15 -1.36 16 6 C 0.06 0.48 4.96 -3.82 -0.02 0.46 16 7 N -0.55 -4.72 5.02 -251.26 -1.26 -5.98 16 8 C 0.02 0.15 9.32 60.07 0.56 0.71 16 9 C 0.02 0.17 9.57 60.06 0.57 0.74 16 10 C 0.71 11.12 8.01 -86.92 -0.70 10.42 16 11 O -0.57 -10.99 13.63 5.28 0.07 -10.92 16 12 N -0.68 -10.88 5.17 -14.24 -0.07 -10.96 16 13 C 0.20 3.93 6.27 -83.71 -0.52 3.40 16 14 C -0.20 -4.06 8.65 -39.34 -0.34 -4.40 16 15 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 16 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 17 C 0.17 4.16 6.64 -39.14 -0.26 3.90 16 18 O -0.18 -5.08 9.76 0.04 0.00 -5.08 16 19 C -0.39 -10.89 9.44 30.89 0.29 -10.60 16 20 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 23 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 C -0.26 -5.70 9.04 -39.21 -0.35 -6.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.08 0.59 6.45 -51.93 -0.33 0.26 16 33 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.09 0.98 7.42 -51.93 -0.39 0.60 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 37 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 38 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.07 0.51 6.47 -51.93 -0.34 0.18 16 42 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 44 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.40 5.24 6.63 -40.82 -0.27 4.97 16 46 H 0.12 2.37 6.43 -52.49 -0.34 2.03 16 47 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 48 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 49 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -33.80 405.90 -9.36 -43.16 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.04 Total: 7.51 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.47 Total: -7.15 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -1.02 Total: -49.01 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.07 Total: -16.00 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.80 -9.36 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276374837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds