Wall clock time and date at job start Tue Mar 31 2020 19:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47375 * 2 1 4 4 C 1.46494 * 119.99802 * 270.00042 * 3 2 1 5 5 C 1.53001 * 109.47043 * 269.99885 * 4 3 2 6 6 C 1.53002 * 109.47076 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47063 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99959 * 66.04890 * 7 6 5 9 9 C 1.46896 * 110.99935 * 189.99861 * 7 6 5 10 10 C 1.34772 * 119.99647 * 89.99469 * 3 2 1 11 11 O 1.21596 * 119.99630 * 179.97438 * 10 3 2 12 12 N 1.34774 * 120.00536 * 0.02562 * 10 3 2 13 13 C 1.39945 * 120.00303 * 174.68698 * 12 10 3 14 14 C 1.38957 * 120.03274 * 326.34550 * 13 12 10 15 15 C 1.38162 * 120.06560 * 180.02562 * 14 13 12 16 16 C 1.38174 * 120.13691 * 359.72203 * 15 14 13 17 17 C 1.38902 * 120.06833 * 0.55244 * 16 15 14 18 18 O 1.35755 * 120.03346 * 179.72219 * 17 16 15 19 19 C 1.34827 * 116.99851 * 173.82281 * 18 17 16 20 20 H 1.07999 * 120.00285 * 354.59576 * 19 18 17 21 21 C 1.38656 * 120.00065 * 174.59479 * 19 18 17 22 22 N 1.31559 * 119.99739 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00454 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46805 * 60.00093 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47015 * 300.00557 * 23 21 19 27 27 C 1.38706 * 120.03707 * 146.36285 * 13 12 10 28 28 H 1.09004 * 109.46687 * 60.00062 * 1 2 3 29 29 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47102 * 300.00133 * 1 2 3 31 31 H 1.09003 * 109.47102 * 239.99867 * 2 1 3 32 32 H 1.09004 * 109.46687 * 119.99938 * 2 1 3 33 33 H 1.09005 * 109.47360 * 30.00075 * 4 3 2 34 34 H 1.09002 * 109.47111 * 149.99577 * 4 3 2 35 35 H 1.08999 * 109.46833 * 299.99671 * 5 4 3 36 36 H 1.08991 * 109.47150 * 60.00324 * 5 4 3 37 37 H 1.09005 * 109.47131 * 300.00070 * 6 5 4 38 38 H 1.09002 * 109.47306 * 59.99552 * 6 5 4 39 39 H 1.08996 * 109.47041 * 59.99434 * 8 7 6 40 40 H 1.08991 * 109.47419 * 180.02562 * 8 7 6 41 41 H 1.09005 * 109.46453 * 299.99921 * 8 7 6 42 42 H 1.09000 * 109.47289 * 60.00467 * 9 7 6 43 43 H 1.08998 * 109.47236 * 180.02562 * 9 7 6 44 44 H 1.09004 * 109.47410 * 300.00289 * 9 7 6 45 45 H 0.96999 * 119.99569 * 354.68522 * 12 10 3 46 46 H 1.07991 * 119.97018 * 359.97438 * 14 13 12 47 47 H 1.08002 * 119.93094 * 179.97438 * 15 14 13 48 48 H 1.08002 * 119.96102 * 180.27619 * 16 15 14 49 49 H 0.96999 * 120.00227 * 179.97438 * 22 21 19 50 50 H 1.08000 * 120.06661 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 3.9628 2.5530 -3.0351 7 7 5.3504 2.3226 -3.4588 8 6 5.5737 0.9074 -3.7833 9 6 5.7042 3.1850 -4.5941 10 6 2.2430 2.0165 1.1672 11 8 2.6488 3.1627 1.1672 12 7 2.0187 1.3811 2.3344 13 6 2.3562 1.9992 3.5438 14 6 3.4639 2.8354 3.6121 15 6 3.7980 3.4455 4.8058 16 6 3.0290 3.2310 5.9336 17 6 1.9239 2.3917 5.8731 18 8 1.1722 2.1769 6.9830 19 6 0.0433 1.4564 6.8276 20 1 -0.2725 1.1536 5.8402 21 6 -0.7124 1.1042 7.9355 22 7 -0.3279 1.4735 9.1383 23 14 -2.2769 0.1066 7.7203 24 1 -1.9510 -1.1933 7.0804 25 1 -2.8951 -0.1372 9.0483 26 1 -3.2279 0.8566 6.8611 27 6 1.5856 1.7774 4.6756 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.2820 2.1693 -3.7950 38 1 3.7959 3.6222 -2.9044 39 1 4.9070 0.6107 -4.5930 40 1 6.6087 0.7646 -4.0935 41 1 5.3709 0.2966 -2.9035 42 1 5.5964 4.2302 -4.3039 43 1 6.7363 2.9938 -4.8879 44 1 5.0423 2.9709 -5.4333 45 1 1.6234 0.4953 2.3362 46 1 4.0647 3.0079 2.7314 47 1 4.6596 4.0948 4.8565 48 1 3.2902 3.7129 6.8642 49 1 -0.8567 1.2274 9.9134 50 1 0.7242 1.1280 4.6249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276374837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:17 Heat of formation + Delta-G solvation = -38.030134 kcal Electronic energy + Delta-G solvation = -28834.312447 eV Core-core repulsion = 24862.042698 eV Total energy + Delta-G solvation = -3972.269750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87769 -40.55515 -38.86230 -38.25253 -37.06861 -35.77287 -34.22847 -33.46443 -31.24371 -30.82936 -30.05629 -28.47913 -27.42757 -27.03864 -24.57108 -24.20699 -23.48938 -22.83017 -21.78510 -20.93198 -19.72820 -19.54701 -18.76001 -17.57914 -16.96871 -16.73652 -16.59412 -16.50722 -16.17839 -15.91084 -15.64751 -15.57063 -15.41307 -15.32001 -14.94437 -14.71447 -14.55917 -14.27564 -13.81675 -13.53055 -13.38226 -13.25671 -13.20031 -12.97636 -12.77139 -12.71747 -12.67466 -12.61328 -12.38957 -12.37596 -12.28754 -12.13164 -12.08249 -11.51552 -11.48576 -11.25275 -11.08110 -10.70398 -9.80762 -9.30767 -9.28157 -8.82138 -8.44599 -6.13314 0.46067 0.72090 1.36181 1.46492 1.50298 1.52764 2.03937 2.19242 2.76533 2.86181 3.06661 3.19487 3.50879 3.89880 3.95062 4.09360 4.13220 4.19267 4.28565 4.32654 4.35327 4.44101 4.46567 4.49343 4.51992 4.59839 4.64083 4.66035 4.71179 4.74217 4.80930 4.85758 4.91441 5.01448 5.02211 5.03541 5.11780 5.14214 5.25584 5.32511 5.35707 5.49493 5.61181 5.68838 5.70152 5.88548 6.03172 6.10551 6.11312 6.21589 6.80076 6.99404 7.43024 7.79229 8.78094 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002362 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.650301 B =11853.446303 C =13105.324405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.617 5.617 4 C 0.135 3.865 5 C -0.119 4.119 6 C 0.062 3.938 7 N -0.571 5.571 8 C 0.023 3.977 9 C 0.025 3.975 10 C 0.700 3.300 11 O -0.608 6.608 12 N -0.675 5.675 13 C 0.206 3.794 14 C -0.199 4.199 15 C -0.051 4.051 16 C -0.215 4.215 17 C 0.136 3.864 18 O -0.225 6.225 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.253 1.253 25 H -0.273 1.273 26 H -0.260 1.260 27 C -0.261 4.261 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.415 0.585 46 H 0.127 0.873 47 H 0.153 0.847 48 H 0.120 0.880 49 H 0.272 0.728 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -5.996 -29.041 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 N -0.353 5.353 4 C 0.012 3.988 5 C -0.158 4.158 6 C -0.066 4.066 7 N -0.295 5.295 8 C -0.125 4.125 9 C -0.123 4.123 10 C 0.403 3.597 11 O -0.487 6.487 12 N -0.324 5.324 13 C 0.111 3.889 14 C -0.220 4.220 15 C -0.069 4.069 16 C -0.235 4.235 17 C 0.085 3.915 18 O -0.132 6.132 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.837 3.163 24 H -0.177 1.177 25 H -0.198 1.198 26 H -0.184 1.184 27 C -0.283 4.283 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.144 0.856 47 H 0.170 0.830 48 H 0.138 0.862 49 H 0.081 0.919 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.964 -5.042 -28.311 29.369 hybrid contribution -1.324 -0.768 -0.101 1.534 sum 4.640 -5.810 -28.413 29.370 Atomic orbital electron populations 1.22239 0.95164 1.03597 1.02069 1.21834 0.94928 0.80776 1.04918 1.47263 1.68929 1.15319 1.03810 1.21386 0.96531 0.97700 0.83221 1.21826 0.96181 1.01140 0.96672 1.21991 0.88250 1.00635 0.95719 1.61925 1.23520 1.06956 1.37112 1.22443 1.01686 0.88023 1.00380 1.22393 1.01292 0.97437 0.91185 1.16052 0.78570 0.84097 0.81016 1.90914 1.53374 1.17925 1.86442 1.42637 1.65805 1.21083 1.02911 1.17208 0.92800 0.94964 0.83969 1.20834 0.98622 1.03883 0.98654 1.20901 0.98295 0.97284 0.90427 1.20458 0.97825 1.04701 1.00514 1.19568 0.91501 0.93599 0.86851 1.83986 1.33624 1.65738 1.29812 1.21724 0.98372 1.33027 0.95696 0.88205 1.26588 1.03165 0.98641 0.93626 1.70181 1.40748 1.45616 0.99132 0.84666 0.75190 0.78208 0.78272 1.17720 1.19792 1.18433 1.20777 1.04276 1.10321 0.92947 0.91575 0.89202 0.94431 0.86841 0.90431 0.87346 0.91762 0.93895 0.90640 0.93084 0.91268 0.94785 0.91084 0.91286 0.91526 0.90795 0.94901 0.74565 0.85557 0.82951 0.86202 0.91853 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 71.98 0.74 -1.40 16 2 C 0.10 1.24 5.85 86.38 0.51 1.74 16 3 N -0.62 -12.54 2.47 -839.81 -2.08 -14.62 16 4 C 0.13 2.27 5.41 86.38 0.47 2.74 16 5 C -0.12 -1.97 5.46 30.60 0.17 -1.80 16 6 C 0.06 0.90 4.96 86.30 0.43 1.33 16 7 N -0.57 -8.87 5.02 -948.85 -4.76 -13.63 16 8 C 0.02 0.27 9.32 127.69 1.19 1.46 16 9 C 0.02 0.30 9.57 127.69 1.22 1.52 16 10 C 0.70 21.31 8.01 179.06 1.44 22.74 16 11 O -0.61 -23.36 13.63 -4.02 -0.05 -23.42 16 12 N -0.68 -20.80 5.17 -317.23 -1.64 -22.44 16 13 C 0.21 8.05 6.27 38.13 0.24 8.29 16 14 C -0.20 -7.74 8.65 22.42 0.19 -7.54 16 15 C -0.05 -1.92 10.03 22.24 0.22 -1.69 16 16 C -0.22 -9.60 9.99 22.41 0.22 -9.38 16 17 C 0.14 6.94 6.64 22.56 0.15 7.09 16 18 O -0.23 -13.59 9.76 -22.76 -0.22 -13.81 16 19 C -0.41 -23.80 9.44 67.92 0.64 -23.15 16 20 H 0.10 5.26 5.30 -2.91 -0.02 5.24 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 22 N -0.92 -56.13 13.67 21.61 0.30 -55.84 16 23 Si 1.02 42.13 29.55 68.60 2.03 44.16 16 24 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 27 C -0.26 -11.70 9.04 22.51 0.20 -11.50 16 28 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.08 0.98 6.45 -2.38 -0.02 0.97 16 33 H 0.11 1.10 8.07 -2.38 -0.02 1.08 16 34 H 0.06 1.41 7.42 -2.39 -0.02 1.39 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.04 6.55 -2.39 -0.02 1.03 16 37 H 0.05 0.56 8.12 -2.38 -0.02 0.54 16 38 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 39 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 41 H 0.07 0.83 6.47 -2.38 -0.02 0.82 16 42 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 43 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 44 H 0.03 0.34 8.14 -2.38 -0.02 0.32 16 45 H 0.42 10.24 6.63 -92.71 -0.61 9.62 16 46 H 0.13 4.84 6.43 -2.92 -0.02 4.83 16 47 H 0.15 4.60 8.06 -2.91 -0.02 4.57 16 48 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 49 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.13 5.61 5.71 -2.91 -0.02 5.60 16 Total: -1.00 -77.67 405.90 2.38 -75.29 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.32 Total: 34.68 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 8.49 Total: -10.36 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -8.18 Total: -106.53 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.28 Total: -37.23 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -77.67 2.38 -75.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276374837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.258 kcal (2) G-P(sol) polarization free energy of solvation -77.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds