Wall clock time and date at job start Tue Mar 31 2020 19:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47192 * 2 1 4 4 C 1.46493 * 120.00082 * 270.00177 * 3 2 1 5 5 C 1.50699 * 109.46973 * 270.00029 * 4 3 2 6 6 H 1.08000 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00263 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00170 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46854 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46902 * 120.00108 * 9 7 5 12 12 H 1.48493 * 109.47102 * 239.99895 * 9 7 5 13 13 C 1.34773 * 120.00022 * 89.99489 * 3 2 1 14 14 O 1.21284 * 120.00242 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00174 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47382 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99926 * 66.04382 * 16 15 13 18 18 C 1.53002 * 109.47012 * 52.40033 * 17 16 15 19 19 O 1.42909 * 109.47011 * 65.55108 * 18 17 16 20 20 C 1.42897 * 114.00046 * 180.02562 * 19 18 17 21 21 C 1.46893 * 110.99775 * 190.00054 * 16 15 13 22 22 C 1.50708 * 109.46817 * 161.43941 * 21 16 15 23 23 C 1.38669 * 120.41916 * 273.39288 * 22 21 16 24 24 C 1.38632 * 118.41783 * 180.24178 * 23 22 21 25 25 C 1.38225 * 119.16069 * 359.75475 * 24 23 22 26 26 N 1.31852 * 120.76463 * 0.02562 * 25 24 23 27 27 C 1.31877 * 121.72891 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47136 * 60.00103 * 1 2 3 29 29 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47489 * 300.00212 * 1 2 3 31 31 H 1.08996 * 109.46949 * 240.00070 * 2 1 3 32 32 H 1.08996 * 109.46797 * 120.00036 * 2 1 3 33 33 H 1.09003 * 109.47185 * 29.99197 * 4 3 2 34 34 H 1.09000 * 109.47334 * 150.00089 * 4 3 2 35 35 H 0.97001 * 120.00245 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46869 * 59.99537 * 15 13 3 37 37 H 1.09005 * 109.46993 * 299.99845 * 15 13 3 38 38 H 1.08996 * 109.47126 * 172.39726 * 17 16 15 39 39 H 1.08995 * 109.47540 * 292.40556 * 17 16 15 40 40 H 1.09002 * 109.47382 * 185.54692 * 18 17 16 41 41 H 1.09001 * 109.47420 * 305.55165 * 18 17 16 42 42 H 1.08994 * 109.47244 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.46768 * 300.00110 * 20 19 18 44 44 H 1.08998 * 109.47552 * 59.99763 * 20 19 18 45 45 H 1.08996 * 109.47545 * 41.44608 * 21 16 15 46 46 H 1.08999 * 109.47139 * 281.43481 * 21 16 15 47 47 H 1.07998 * 120.79039 * 359.97438 * 23 22 21 48 48 H 1.07993 * 120.41953 * 179.73245 * 24 23 22 49 49 H 1.08002 * 119.61662 * 180.02562 * 25 24 23 50 50 H 1.07997 * 119.62344 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1491 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0965 -3.4168 10 1 6.6015 1.2423 -2.4156 11 1 5.9215 1.4169 -4.7372 12 1 6.6205 3.3979 -3.5257 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3107 2.2059 3.5889 17 6 1.3843 3.3452 3.6276 18 6 -0.0568 2.8314 3.6123 19 8 -0.3167 2.1060 4.8158 20 6 -1.6425 1.5798 4.9025 21 6 2.3075 1.4810 4.8665 22 6 3.0603 2.2799 5.8992 23 6 4.4355 2.1505 6.0215 24 6 5.0854 2.9014 6.9888 25 6 4.3469 3.7520 7.7900 26 7 3.0406 3.8528 7.6424 27 6 2.3894 3.1541 6.7331 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1383 35 1 3.6747 3.5147 -4.4448 36 1 2.6227 0.4187 2.5299 37 1 0.9443 1.0115 2.5302 38 1 1.5548 3.9215 4.5370 39 1 1.5527 3.9803 2.7580 40 1 -0.7428 3.6756 3.5416 41 1 -0.1993 2.1746 2.7542 42 1 -1.7595 1.0431 5.8439 43 1 -2.3616 2.3977 4.8582 44 1 -1.8174 0.8969 4.0712 45 1 2.7886 0.5118 4.7356 46 1 1.2797 1.3347 5.1987 47 1 4.9866 1.4774 5.3815 48 1 6.1550 2.8226 7.1150 49 1 4.8457 4.3408 8.5456 50 1 1.3188 3.2629 6.6419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277064953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:42 Heat of formation + Delta-G solvation = -23.359003 kcal Electronic energy + Delta-G solvation = -30251.525616 eV Core-core repulsion = 26279.892054 eV Total energy + Delta-G solvation = -3971.633562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.38582 -39.50838 -38.26077 -36.39513 -35.17938 -32.91172 -32.68674 -31.67404 -30.12944 -29.91602 -28.23511 -26.79152 -26.38261 -24.69409 -23.57942 -23.08611 -22.77238 -22.09742 -20.55148 -18.26585 -17.13752 -16.95248 -16.86790 -16.47679 -16.30111 -16.10481 -15.98954 -15.18655 -14.92658 -14.69172 -14.64978 -14.14495 -14.03672 -13.58815 -13.45276 -13.34852 -13.00726 -12.91195 -12.61578 -12.49148 -12.28625 -12.08945 -12.01436 -11.72523 -11.63323 -11.46633 -11.37960 -11.19102 -10.98916 -10.85869 -10.72565 -10.53783 -10.11794 -9.79145 -9.75622 -9.59713 -9.43496 -9.01706 -8.84320 -8.43328 -8.02686 -7.63805 -6.04040 -4.08293 1.10501 1.31987 3.30028 3.36821 3.39140 3.43938 3.52179 3.65436 3.93553 4.31166 4.45783 4.47642 4.80049 4.84626 4.93048 5.00848 5.02854 5.05652 5.09314 5.14180 5.16916 5.22989 5.30240 5.30900 5.42017 5.43360 5.46881 5.52793 5.56748 5.65095 5.73397 5.80254 5.81843 5.97525 6.04735 6.12914 6.18502 6.26104 6.36577 6.41681 6.72423 6.86738 6.98778 7.13624 7.17715 7.44669 7.56809 7.93077 7.97639 8.24419 8.44054 8.92205 9.14075 9.57109 11.04021 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.003405 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.211983 B = 8220.320458 C = 9891.600974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.031 3.969 16 N -0.507 5.507 17 C 0.050 3.950 18 C 0.017 3.983 19 O -0.384 6.384 20 C 0.025 3.975 21 C 0.076 3.924 22 C -0.115 4.115 23 C -0.057 4.057 24 C -0.176 4.176 25 C 0.089 3.911 26 N -0.490 5.490 27 C 0.106 3.894 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.150 0.850 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -6.827 19.288 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.099 4.099 16 N -0.230 5.230 17 C -0.078 4.078 18 C -0.060 4.060 19 O -0.304 6.304 20 C -0.071 4.071 21 C -0.051 4.051 22 C -0.118 4.118 23 C -0.083 4.083 24 C -0.196 4.196 25 C -0.068 4.068 26 N -0.198 5.198 27 C -0.051 4.051 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.151 0.849 48 H 0.149 0.851 49 H 0.168 0.832 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.896 -5.378 19.694 21.548 hybrid contribution 0.455 -1.111 -1.182 1.685 sum -6.441 -6.489 18.512 20.647 Atomic orbital electron populations 1.22223 0.97005 1.01342 1.02061 1.21392 0.93306 0.84455 1.02635 1.48261 1.64092 1.13169 1.07716 1.19236 0.96220 0.93556 0.78080 1.21477 0.96943 1.31723 1.06105 0.92431 1.24931 0.97801 0.94949 0.96436 1.69939 1.35580 1.33641 1.14317 0.86458 0.84742 0.78067 0.78250 1.19803 1.21025 1.20893 1.20136 0.78826 0.87152 0.84688 1.90632 1.44684 1.17912 1.86753 1.22196 1.00781 0.96202 0.90748 1.61767 1.50985 1.08893 1.01312 1.22599 0.85885 0.94293 1.05039 1.23541 0.99594 0.95768 0.87140 1.87879 1.29868 1.71964 1.40683 1.22765 0.84537 0.97935 1.01859 1.21467 1.00956 0.94973 0.87683 1.20786 0.94550 0.98835 0.97613 1.21525 0.93943 0.97265 0.95583 1.22124 1.01324 0.98593 0.97535 1.22691 0.89991 0.96203 0.97938 1.67683 1.09974 1.22435 1.19746 1.22760 1.00388 0.91353 0.90611 0.91985 0.92186 0.93504 0.89913 0.91912 0.95172 0.93979 0.92824 0.88641 0.92016 0.90189 0.86604 0.92715 0.92642 0.89824 0.94117 0.94210 0.90675 0.89100 0.84936 0.85087 0.83221 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.15 2.46 -175.07 -0.43 -12.58 16 4 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 5 C -0.52 -14.72 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.51 10.08 7.44 -10.98 -0.08 10.00 16 14 O -0.52 -12.71 13.89 5.55 0.08 -12.63 16 15 C 0.03 0.46 3.59 -4.97 -0.02 0.44 16 16 N -0.51 -7.31 4.38 -237.51 -1.04 -8.35 16 17 C 0.05 0.71 5.42 -3.82 -0.02 0.69 16 18 C 0.02 0.20 5.63 37.16 0.21 0.41 16 19 O -0.38 -4.00 7.41 -35.23 -0.26 -4.26 16 20 C 0.03 0.20 11.01 101.05 1.11 1.31 16 21 C 0.08 0.90 5.02 -4.98 -0.02 0.87 16 22 C -0.12 -1.41 5.07 -104.48 -0.53 -1.94 16 23 C -0.06 -0.66 9.87 -39.28 -0.39 -1.05 16 24 C -0.18 -1.86 10.11 -39.44 -0.40 -2.26 16 25 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 26 N -0.49 -6.44 10.36 -13.25 -0.14 -6.58 16 27 C 0.11 1.33 9.45 -17.55 -0.17 1.16 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.55 7.22 -51.93 -0.38 0.18 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.10 1.26 7.10 -51.93 -0.37 0.89 16 37 H 0.06 0.78 4.77 -51.93 -0.25 0.53 16 38 H 0.08 1.10 6.00 -51.93 -0.31 0.79 16 39 H 0.12 2.01 6.05 -51.93 -0.31 1.69 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.68 5.86 -51.93 -0.30 0.37 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.80 7.73 -51.93 -0.40 0.39 16 46 H 0.09 1.02 4.52 -51.93 -0.23 0.79 16 47 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 50 H 0.16 1.80 7.79 -52.49 -0.41 1.39 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -33.72 398.80 -8.53 -42.25 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.87 Total: 1.83 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.59 Total: 3.20 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.87 Total: -53.28 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.18 Total: -16.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.72 -8.53 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277064953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.895 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds