Wall clock time and date at job start Tue Mar 31 2020 19:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47192 * 2 1 4 4 C 1.46493 * 120.00082 * 270.00177 * 3 2 1 5 5 C 1.50699 * 109.46973 * 270.00029 * 4 3 2 6 6 H 1.08000 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00263 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00170 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46854 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46902 * 120.00108 * 9 7 5 12 12 H 1.48493 * 109.47102 * 239.99895 * 9 7 5 13 13 C 1.34773 * 120.00022 * 89.99489 * 3 2 1 14 14 O 1.21284 * 120.00242 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00174 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47382 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99926 * 66.04382 * 16 15 13 18 18 C 1.53002 * 109.47012 * 52.40033 * 17 16 15 19 19 O 1.42909 * 109.47011 * 65.55108 * 18 17 16 20 20 C 1.42897 * 114.00046 * 180.02562 * 19 18 17 21 21 C 1.46893 * 110.99775 * 190.00054 * 16 15 13 22 22 C 1.50708 * 109.46817 * 161.43941 * 21 16 15 23 23 C 1.38669 * 120.41916 * 273.39288 * 22 21 16 24 24 C 1.38632 * 118.41783 * 180.24178 * 23 22 21 25 25 C 1.38225 * 119.16069 * 359.75475 * 24 23 22 26 26 N 1.31852 * 120.76463 * 0.02562 * 25 24 23 27 27 C 1.31877 * 121.72891 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47136 * 60.00103 * 1 2 3 29 29 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47489 * 300.00212 * 1 2 3 31 31 H 1.08996 * 109.46949 * 240.00070 * 2 1 3 32 32 H 1.08996 * 109.46797 * 120.00036 * 2 1 3 33 33 H 1.09003 * 109.47185 * 29.99197 * 4 3 2 34 34 H 1.09000 * 109.47334 * 150.00089 * 4 3 2 35 35 H 0.97001 * 120.00245 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46869 * 59.99537 * 15 13 3 37 37 H 1.09005 * 109.46993 * 299.99845 * 15 13 3 38 38 H 1.08996 * 109.47126 * 172.39726 * 17 16 15 39 39 H 1.08995 * 109.47540 * 292.40556 * 17 16 15 40 40 H 1.09002 * 109.47382 * 185.54692 * 18 17 16 41 41 H 1.09001 * 109.47420 * 305.55165 * 18 17 16 42 42 H 1.08994 * 109.47244 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.46768 * 300.00110 * 20 19 18 44 44 H 1.08998 * 109.47552 * 59.99763 * 20 19 18 45 45 H 1.08996 * 109.47545 * 41.44608 * 21 16 15 46 46 H 1.08999 * 109.47139 * 281.43481 * 21 16 15 47 47 H 1.07998 * 120.79039 * 359.97438 * 23 22 21 48 48 H 1.07993 * 120.41953 * 179.73245 * 24 23 22 49 49 H 1.08002 * 119.61662 * 180.02562 * 25 24 23 50 50 H 1.07997 * 119.62344 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1491 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0965 -3.4168 10 1 6.6015 1.2423 -2.4156 11 1 5.9215 1.4169 -4.7372 12 1 6.6205 3.3979 -3.5257 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3107 2.2059 3.5889 17 6 1.3843 3.3452 3.6276 18 6 -0.0568 2.8314 3.6123 19 8 -0.3167 2.1060 4.8158 20 6 -1.6425 1.5798 4.9025 21 6 2.3075 1.4810 4.8665 22 6 3.0603 2.2799 5.8992 23 6 4.4355 2.1505 6.0215 24 6 5.0854 2.9014 6.9888 25 6 4.3469 3.7520 7.7900 26 7 3.0406 3.8528 7.6424 27 6 2.3894 3.1541 6.7331 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1383 35 1 3.6747 3.5147 -4.4448 36 1 2.6227 0.4187 2.5299 37 1 0.9443 1.0115 2.5302 38 1 1.5548 3.9215 4.5370 39 1 1.5527 3.9803 2.7580 40 1 -0.7428 3.6756 3.5416 41 1 -0.1993 2.1746 2.7542 42 1 -1.7595 1.0431 5.8439 43 1 -2.3616 2.3977 4.8582 44 1 -1.8174 0.8969 4.0712 45 1 2.7886 0.5118 4.7356 46 1 1.2797 1.3347 5.1987 47 1 4.9866 1.4774 5.3815 48 1 6.1550 2.8226 7.1150 49 1 4.8457 4.3408 8.5456 50 1 1.3188 3.2629 6.6419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277064953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:41 Heat of formation + Delta-G solvation = -46.362318 kcal Electronic energy + Delta-G solvation = -30252.523115 eV Core-core repulsion = 26279.892054 eV Total energy + Delta-G solvation = -3972.631060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40609 -40.73830 -39.35908 -37.44036 -36.72820 -34.89884 -33.71312 -32.56561 -31.61741 -30.98450 -29.61966 -28.09910 -27.37527 -25.73514 -24.84660 -24.42120 -24.01276 -23.21534 -21.63554 -19.75517 -18.60829 -18.08458 -17.94844 -17.82946 -17.51279 -17.29547 -16.96826 -16.58418 -16.14175 -15.91403 -15.69505 -15.56264 -15.18589 -14.70712 -14.57984 -14.47461 -14.22090 -14.10144 -13.86268 -13.62403 -13.39950 -13.29919 -13.23992 -13.07617 -12.88512 -12.71620 -12.66918 -12.51537 -12.42905 -12.33383 -12.14264 -11.98341 -11.76158 -11.65125 -10.68266 -10.63876 -10.60782 -10.41942 -10.29921 -9.88960 -9.39358 -9.06306 -8.21086 -6.35327 0.23580 0.43729 1.35960 1.38849 1.50280 1.90635 2.26359 2.41862 2.67818 2.91668 3.08472 3.26052 3.63301 3.74421 3.89545 3.95272 4.01179 4.07894 4.12594 4.20209 4.22494 4.29259 4.39794 4.42335 4.47203 4.53215 4.58524 4.61657 4.64798 4.71755 4.79254 4.89941 4.94959 4.96408 4.99727 5.07207 5.08124 5.20641 5.24596 5.27978 5.38476 5.48509 5.60879 5.85531 5.88902 5.98539 6.09405 6.13067 6.16518 6.73699 6.87722 7.09848 7.31403 7.58916 8.85767 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.003405 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.211983 B = 8220.320458 C = 9891.600974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.266 3.734 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.498 3.502 14 O -0.578 6.578 15 C 0.048 3.952 16 N -0.527 5.527 17 C 0.055 3.945 18 C 0.030 3.970 19 O -0.389 6.389 20 C 0.020 3.980 21 C 0.084 3.916 22 C -0.125 4.125 23 C -0.070 4.070 24 C -0.175 4.175 25 C 0.080 3.920 26 N -0.515 5.515 27 C 0.096 3.904 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.020 0.980 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.142 0.858 48 H 0.158 0.842 49 H 0.175 0.825 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 -9.295 20.947 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.082 4.082 16 N -0.250 5.250 17 C -0.073 4.073 18 C -0.048 4.048 19 O -0.309 6.309 20 C -0.076 4.076 21 C -0.042 4.042 22 C -0.128 4.128 23 C -0.096 4.096 24 C -0.194 4.194 25 C -0.077 4.077 26 N -0.224 5.224 27 C -0.061 4.061 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.160 0.840 48 H 0.175 0.825 49 H 0.192 0.808 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.600 -7.900 21.376 23.726 hybrid contribution 0.330 -0.313 -1.641 1.702 sum -6.270 -8.213 19.736 22.277 Atomic orbital electron populations 1.22146 0.94695 1.03446 1.01451 1.21731 0.95195 0.81523 1.03875 1.48273 1.64269 1.15050 1.06147 1.18633 0.95059 0.91418 0.80475 1.21754 0.97983 1.31688 1.06289 0.92934 1.25836 1.02220 0.94570 0.96535 1.70057 1.37625 1.34446 1.14798 0.85400 0.79266 0.77935 0.78402 1.19085 1.19424 1.20980 1.21149 0.77378 0.86704 0.86153 1.90613 1.47006 1.20479 1.87669 1.22078 1.02784 0.95797 0.87525 1.61681 1.51572 1.09296 1.02455 1.22323 0.87737 0.94168 1.03054 1.23250 0.97916 0.96025 0.87635 1.87844 1.31517 1.71837 1.39683 1.22960 0.83185 0.98296 1.03150 1.21462 1.01639 0.95095 0.86024 1.20875 0.94992 0.99107 0.97790 1.21796 0.93994 0.97745 0.96102 1.22434 1.02663 0.97653 0.96650 1.23178 0.89573 0.96439 0.98514 1.67682 1.11139 1.23143 1.20434 1.22834 1.00655 0.91654 0.90930 0.94327 0.88615 0.92432 0.91058 0.88249 0.96227 0.98701 0.92520 0.86286 0.89370 0.90325 0.90542 0.92316 0.92947 0.88061 0.93736 0.93415 0.89029 0.88290 0.84012 0.82465 0.80769 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.10 2.86 5.93 86.38 0.51 3.37 16 3 N -0.61 -24.86 2.46 -826.18 -2.03 -26.89 16 4 C 0.27 14.25 5.16 85.63 0.44 14.69 16 5 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 9 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 C 0.50 20.06 7.44 87.66 0.65 20.71 16 14 O -0.58 -29.48 13.89 -3.04 -0.04 -29.53 16 15 C 0.05 1.32 3.59 85.56 0.31 1.62 16 16 N -0.53 -14.71 4.38 -905.36 -3.96 -18.67 16 17 C 0.06 1.60 5.42 86.30 0.47 2.06 16 18 C 0.03 0.67 5.63 71.98 0.41 1.08 16 19 O -0.39 -7.29 7.41 -148.98 -1.10 -8.39 16 20 C 0.02 0.26 11.01 113.37 1.25 1.51 16 21 C 0.08 1.80 5.02 85.56 0.43 2.23 16 22 C -0.13 -2.90 5.07 -19.77 -0.10 -3.00 16 23 C -0.07 -1.52 9.87 22.47 0.22 -1.30 16 24 C -0.17 -3.36 10.11 22.36 0.23 -3.14 16 25 C 0.08 1.67 11.18 84.69 0.95 2.61 16 26 N -0.52 -13.17 10.36 -195.85 -2.03 -15.20 16 27 C 0.10 2.34 9.45 84.67 0.80 3.15 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.19 7.22 -2.39 -0.02 1.18 16 31 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 32 H 0.10 2.14 6.44 -2.39 -0.02 2.13 16 33 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 34 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 35 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.12 2.71 7.10 -2.39 -0.02 2.69 16 37 H 0.09 1.96 4.77 -2.38 -0.01 1.95 16 38 H 0.08 2.23 6.00 -2.39 -0.01 2.21 16 39 H 0.08 2.83 6.05 -2.39 -0.01 2.82 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.20 5.86 -2.39 -0.01 1.19 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 1.64 7.73 -2.39 -0.02 1.62 16 46 H 0.10 1.97 4.52 -2.45 -0.01 1.96 16 47 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 48 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 49 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 50 H 0.16 3.58 7.79 -2.91 -0.02 3.55 16 Total: -1.00 -77.39 398.80 2.07 -75.32 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.93 Total: 19.60 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 8.00 Total: 12.69 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -7.73 Total: -116.99 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.15 Total: -37.92 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.39 2.07 -75.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277064953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.957 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds