Wall clock time and date at job start Tue Mar 31 2020 19:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47051 * 2 1 4 4 C 1.46504 * 119.99868 * 270.00205 * 3 2 1 5 5 C 1.50701 * 109.47355 * 274.51874 * 4 3 2 6 6 H 1.08003 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00557 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99669 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00409 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46771 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47195 * 120.00275 * 9 7 5 12 12 H 1.48503 * 109.47479 * 240.00554 * 9 7 5 13 13 C 1.34768 * 120.00218 * 90.00175 * 3 2 1 14 14 O 1.21285 * 119.99969 * 185.07868 * 13 3 2 15 15 C 1.50700 * 120.00089 * 5.08205 * 13 3 2 16 16 N 1.46896 * 109.47130 * 177.94407 * 15 13 3 17 17 C 1.46898 * 111.00636 * 72.44104 * 16 15 13 18 18 C 1.52998 * 109.46761 * 55.94674 * 17 16 15 19 19 O 1.42897 * 109.47272 * 68.74275 * 18 17 16 20 20 C 1.42903 * 114.00553 * 184.70841 * 19 18 17 21 21 C 1.46908 * 110.99963 * 196.39786 * 16 15 13 22 22 C 1.50693 * 109.47157 * 164.82449 * 21 16 15 23 23 C 1.38226 * 119.61736 * 95.02084 * 22 21 16 24 24 C 1.38632 * 119.16113 * 179.97438 * 23 22 21 25 25 C 1.38674 * 118.41770 * 359.97438 * 24 23 22 26 26 C 1.38182 * 119.16672 * 0.02562 * 25 24 23 27 27 N 1.31854 * 119.61888 * 274.99437 * 22 21 16 28 28 H 1.08995 * 109.47859 * 60.00085 * 1 2 3 29 29 H 1.09008 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46845 * 299.99683 * 1 2 3 31 31 H 1.09003 * 109.46821 * 239.99761 * 2 1 3 32 32 H 1.09002 * 109.47208 * 119.99965 * 2 1 3 33 33 H 1.09003 * 109.47499 * 34.51520 * 4 3 2 34 34 H 1.08998 * 109.47245 * 154.51898 * 4 3 2 35 35 H 0.97000 * 119.99720 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47136 * 57.94207 * 15 13 3 37 37 H 1.08997 * 109.46914 * 297.94233 * 15 13 3 38 38 H 1.08992 * 109.47575 * 175.94516 * 17 16 15 39 39 H 1.08997 * 109.46856 * 295.95386 * 17 16 15 40 40 H 1.09003 * 109.47444 * 188.73875 * 18 17 16 41 41 H 1.08999 * 109.47702 * 308.74390 * 18 17 16 42 42 H 1.08997 * 109.47245 * 184.94294 * 20 19 18 43 43 H 1.09000 * 109.46783 * 304.93724 * 20 19 18 44 44 H 1.08992 * 109.46861 * 64.93523 * 20 19 18 45 45 H 1.08999 * 109.46895 * 44.82206 * 21 16 15 46 46 H 1.09005 * 109.46836 * 284.82681 * 21 16 15 47 47 H 1.07994 * 120.42302 * 359.95730 * 23 22 21 48 48 H 1.07992 * 120.79153 * 180.02562 * 24 23 22 49 49 H 1.08008 * 120.41402 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.61916 * 180.27040 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6492 1.7451 -1.7599 6 1 4.2853 1.0890 -1.1842 7 6 4.1060 2.2838 -2.9440 8 7 3.3316 3.0831 -3.6448 9 14 5.8252 1.8794 -3.5524 10 1 6.4890 0.9651 -2.5886 11 1 5.7381 1.2199 -4.8801 12 1 6.6152 3.1312 -3.6723 13 6 2.2430 2.0165 1.1671 14 8 2.5584 3.1877 1.1691 15 6 2.1023 1.2718 2.4697 16 7 2.4455 2.1653 3.5840 17 6 1.3948 3.1696 3.7966 18 6 0.0547 2.4660 4.0203 19 8 0.0786 1.7839 5.2758 20 6 -1.0901 1.0037 5.5358 21 6 2.6995 1.4009 4.8126 22 6 3.3984 2.2812 5.8164 23 6 2.6570 2.9467 6.7746 24 6 3.3097 3.7536 7.6937 25 6 4.6900 3.8609 7.6147 26 6 5.3642 3.1654 6.6292 27 7 4.7101 2.4072 5.7709 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5295 1.7458 -2.0068 34 1 2.1739 3.1479 -1.1196 35 1 3.6531 3.4623 -4.4777 36 1 2.7743 0.4135 2.4719 37 1 1.0740 0.9285 2.5827 38 1 1.6394 3.7719 4.6714 39 1 1.3251 3.8136 2.9199 40 1 -0.7473 3.2043 4.0232 41 1 -0.1163 1.7468 3.2194 42 1 -1.0337 0.5892 6.5423 43 1 -1.9745 1.6352 5.4520 44 1 -1.1534 0.1918 4.8114 45 1 3.3292 0.5416 4.5822 46 1 1.7526 1.0564 5.2284 47 1 1.5828 2.8397 6.8066 48 1 2.7565 4.2852 8.4537 49 1 5.2312 4.4809 8.3141 50 1 6.4396 3.2403 6.5637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287490268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:39 Heat of formation + Delta-G solvation = -20.625302 kcal Electronic energy + Delta-G solvation = -30209.751409 eV Core-core repulsion = 26238.236389 eV Total energy + Delta-G solvation = -3971.515020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37632 -39.41301 -38.29185 -36.32225 -35.09984 -32.77778 -32.50955 -31.85144 -30.07283 -29.94247 -28.29497 -26.85707 -26.38102 -24.74542 -23.51270 -23.04280 -22.77479 -22.05802 -20.54445 -18.21086 -17.09774 -16.89978 -16.73547 -16.40480 -16.28698 -16.04778 -15.93881 -15.24997 -15.02722 -14.78300 -14.64807 -14.11096 -14.01884 -13.47387 -13.37479 -13.28945 -13.14996 -12.77564 -12.48913 -12.41253 -12.28230 -12.01922 -11.96080 -11.76460 -11.63588 -11.43831 -11.33955 -11.15124 -11.01449 -10.83579 -10.68497 -10.49292 -10.08393 -9.84662 -9.77700 -9.54924 -9.32262 -8.99814 -8.81559 -8.39331 -7.95530 -7.56678 -6.00128 -4.04570 1.12192 1.32357 3.33343 3.40304 3.42306 3.46722 3.54471 3.62823 4.00339 4.34104 4.42685 4.50722 4.77560 4.84256 4.87022 4.99065 5.04703 5.08384 5.12887 5.14671 5.18494 5.22890 5.33056 5.34546 5.39122 5.41733 5.54622 5.58783 5.65780 5.68611 5.77242 5.80786 5.84220 5.97602 6.03506 6.17355 6.17967 6.19986 6.25873 6.47386 6.73914 6.84736 7.02500 7.18222 7.23470 7.51601 7.63005 7.97381 8.13333 8.28988 8.51350 8.96684 9.20557 9.60960 11.07827 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003377 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.290618 B = 8288.916540 C = 9988.901595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.509 3.491 14 O -0.526 6.526 15 C 0.032 3.968 16 N -0.503 5.503 17 C 0.052 3.948 18 C 0.016 3.984 19 O -0.383 6.383 20 C 0.025 3.975 21 C 0.084 3.916 22 C 0.150 3.850 23 C -0.162 4.162 24 C -0.083 4.083 25 C -0.182 4.182 26 C 0.097 3.903 27 N -0.467 5.467 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.141 0.859 48 H 0.129 0.871 49 H 0.129 0.871 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -5.201 22.468 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.402 6.402 15 C -0.099 4.099 16 N -0.225 5.225 17 C -0.076 4.076 18 C -0.062 4.062 19 O -0.303 6.303 20 C -0.071 4.071 21 C -0.043 4.043 22 C 0.011 3.989 23 C -0.183 4.183 24 C -0.109 4.109 25 C -0.202 4.202 26 C -0.060 4.060 27 N -0.176 5.176 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.158 0.842 48 H 0.147 0.853 49 H 0.147 0.853 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.260 -4.656 21.622 23.279 hybrid contribution -0.488 -0.181 0.218 0.564 sum -7.748 -4.837 21.840 23.673 Atomic orbital electron populations 1.22210 0.97042 1.01245 1.02051 1.21378 0.93238 0.84508 1.02650 1.48226 1.64231 1.13220 1.07675 1.19244 0.96024 0.93934 0.78061 1.21509 0.99812 1.29160 1.05973 0.92361 1.24934 0.97667 0.94930 0.96590 1.69949 1.36434 1.31878 1.15172 0.86459 0.84406 0.78264 0.78403 1.19736 1.21045 1.20894 1.20135 0.78168 0.87582 0.84668 1.90638 1.46563 1.16186 1.86798 1.22193 1.00883 0.95976 0.90815 1.61596 1.42562 1.14996 1.03349 1.22525 0.86050 0.95124 1.03878 1.23566 1.00696 0.96331 0.85625 1.87900 1.39443 1.64692 1.38238 1.22766 0.88191 0.94737 1.01446 1.21470 1.00078 0.94195 0.88544 1.21092 0.89319 0.94790 0.93686 1.22158 1.01843 0.98038 0.96224 1.21548 0.94552 0.96830 0.97941 1.22103 0.95327 1.01912 1.00832 1.22759 1.00347 0.92436 0.90458 1.67535 1.09758 1.17005 1.23272 0.91987 0.92247 0.93556 0.89880 0.91949 0.95335 0.93609 0.92851 0.88429 0.92057 0.90031 0.87269 0.92672 0.92478 0.89820 0.94103 0.94095 0.89940 0.89031 0.84155 0.85294 0.85255 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.70 6.00 -4.04 -0.02 1.67 16 3 N -0.60 -12.63 2.46 -175.06 -0.43 -13.06 16 4 C 0.25 6.48 5.25 -5.19 -0.03 6.45 16 5 C -0.53 -15.06 9.38 -34.44 -0.32 -15.39 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 13 C 0.51 10.60 7.47 -10.99 -0.08 10.52 16 14 O -0.53 -13.27 14.23 5.55 0.08 -13.19 16 15 C 0.03 0.50 3.76 -4.98 -0.02 0.48 16 16 N -0.50 -7.86 4.30 -237.52 -1.02 -8.88 16 17 C 0.05 0.74 5.45 -3.83 -0.02 0.72 16 18 C 0.02 0.17 5.78 37.16 0.21 0.39 16 19 O -0.38 -3.76 6.12 -35.23 -0.22 -3.97 16 20 C 0.03 0.18 11.01 101.05 1.11 1.29 16 21 C 0.08 1.12 5.06 -4.97 -0.03 1.10 16 22 C 0.15 2.07 5.82 -82.59 -0.48 1.59 16 23 C -0.16 -1.87 8.27 -39.44 -0.33 -2.20 16 24 C -0.08 -0.83 10.18 -39.27 -0.40 -1.23 16 25 C -0.18 -1.84 10.11 -39.44 -0.40 -2.23 16 26 C 0.10 1.19 11.18 -17.55 -0.20 1.00 16 27 N -0.47 -7.10 10.27 -9.48 -0.10 -7.20 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.05 0.56 7.61 -51.93 -0.40 0.17 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.06 0.83 6.39 -51.93 -0.33 0.49 16 33 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.05 1.37 7.23 -51.93 -0.38 0.99 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.10 1.42 7.06 -51.93 -0.37 1.05 16 37 H 0.06 0.79 4.86 -51.93 -0.25 0.54 16 38 H 0.08 1.13 6.15 -51.93 -0.32 0.81 16 39 H 0.11 1.85 6.45 -51.93 -0.33 1.52 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.64 5.64 -51.93 -0.29 0.35 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 1.11 7.74 -51.93 -0.40 0.70 16 46 H 0.09 1.07 4.59 -51.93 -0.24 0.83 16 47 H 0.14 1.45 6.64 -52.49 -0.35 1.10 16 48 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 50 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -35.19 397.64 -8.54 -43.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.85 Total: 1.51 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.71 Total: 4.02 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.81 Total: -55.29 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.14 Total: -17.16 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.19 -8.54 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287490268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.104 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds