Wall clock time and date at job start Tue Mar 31 2020 19:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47051 * 2 1 4 4 C 1.46504 * 119.99868 * 270.00205 * 3 2 1 5 5 C 1.50701 * 109.47355 * 274.51874 * 4 3 2 6 6 H 1.08003 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00557 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99669 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00409 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46771 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47195 * 120.00275 * 9 7 5 12 12 H 1.48503 * 109.47479 * 240.00554 * 9 7 5 13 13 C 1.34768 * 120.00218 * 90.00175 * 3 2 1 14 14 O 1.21285 * 119.99969 * 185.07868 * 13 3 2 15 15 C 1.50700 * 120.00089 * 5.08205 * 13 3 2 16 16 N 1.46896 * 109.47130 * 177.94407 * 15 13 3 17 17 C 1.46898 * 111.00636 * 72.44104 * 16 15 13 18 18 C 1.52998 * 109.46761 * 55.94674 * 17 16 15 19 19 O 1.42897 * 109.47272 * 68.74275 * 18 17 16 20 20 C 1.42903 * 114.00553 * 184.70841 * 19 18 17 21 21 C 1.46908 * 110.99963 * 196.39786 * 16 15 13 22 22 C 1.50693 * 109.47157 * 164.82449 * 21 16 15 23 23 C 1.38226 * 119.61736 * 95.02084 * 22 21 16 24 24 C 1.38632 * 119.16113 * 179.97438 * 23 22 21 25 25 C 1.38674 * 118.41770 * 359.97438 * 24 23 22 26 26 C 1.38182 * 119.16672 * 0.02562 * 25 24 23 27 27 N 1.31854 * 119.61888 * 274.99437 * 22 21 16 28 28 H 1.08995 * 109.47859 * 60.00085 * 1 2 3 29 29 H 1.09008 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46845 * 299.99683 * 1 2 3 31 31 H 1.09003 * 109.46821 * 239.99761 * 2 1 3 32 32 H 1.09002 * 109.47208 * 119.99965 * 2 1 3 33 33 H 1.09003 * 109.47499 * 34.51520 * 4 3 2 34 34 H 1.08998 * 109.47245 * 154.51898 * 4 3 2 35 35 H 0.97000 * 119.99720 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47136 * 57.94207 * 15 13 3 37 37 H 1.08997 * 109.46914 * 297.94233 * 15 13 3 38 38 H 1.08992 * 109.47575 * 175.94516 * 17 16 15 39 39 H 1.08997 * 109.46856 * 295.95386 * 17 16 15 40 40 H 1.09003 * 109.47444 * 188.73875 * 18 17 16 41 41 H 1.08999 * 109.47702 * 308.74390 * 18 17 16 42 42 H 1.08997 * 109.47245 * 184.94294 * 20 19 18 43 43 H 1.09000 * 109.46783 * 304.93724 * 20 19 18 44 44 H 1.08992 * 109.46861 * 64.93523 * 20 19 18 45 45 H 1.08999 * 109.46895 * 44.82206 * 21 16 15 46 46 H 1.09005 * 109.46836 * 284.82681 * 21 16 15 47 47 H 1.07994 * 120.42302 * 359.95730 * 23 22 21 48 48 H 1.07992 * 120.79153 * 180.02562 * 24 23 22 49 49 H 1.08008 * 120.41402 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.61916 * 180.27040 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6492 1.7451 -1.7599 6 1 4.2853 1.0890 -1.1842 7 6 4.1060 2.2838 -2.9440 8 7 3.3316 3.0831 -3.6448 9 14 5.8252 1.8794 -3.5524 10 1 6.4890 0.9651 -2.5886 11 1 5.7381 1.2199 -4.8801 12 1 6.6152 3.1312 -3.6723 13 6 2.2430 2.0165 1.1671 14 8 2.5584 3.1877 1.1691 15 6 2.1023 1.2718 2.4697 16 7 2.4455 2.1653 3.5840 17 6 1.3948 3.1696 3.7966 18 6 0.0547 2.4660 4.0203 19 8 0.0786 1.7839 5.2758 20 6 -1.0901 1.0037 5.5358 21 6 2.6995 1.4009 4.8126 22 6 3.3984 2.2812 5.8164 23 6 2.6570 2.9467 6.7746 24 6 3.3097 3.7536 7.6937 25 6 4.6900 3.8609 7.6147 26 6 5.3642 3.1654 6.6292 27 7 4.7101 2.4072 5.7709 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5295 1.7458 -2.0068 34 1 2.1739 3.1479 -1.1196 35 1 3.6531 3.4623 -4.4777 36 1 2.7743 0.4135 2.4719 37 1 1.0740 0.9285 2.5827 38 1 1.6394 3.7719 4.6714 39 1 1.3251 3.8136 2.9199 40 1 -0.7473 3.2043 4.0232 41 1 -0.1163 1.7468 3.2194 42 1 -1.0337 0.5892 6.5423 43 1 -1.9745 1.6352 5.4520 44 1 -1.1534 0.1918 4.8114 45 1 3.3292 0.5416 4.5822 46 1 1.7526 1.0564 5.2284 47 1 1.5828 2.8397 6.8066 48 1 2.7565 4.2852 8.4537 49 1 5.2312 4.4809 8.3141 50 1 6.4396 3.2403 6.5637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287490268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:38 Heat of formation + Delta-G solvation = -45.196573 kcal Electronic energy + Delta-G solvation = -30210.816899 eV Core-core repulsion = 26238.236389 eV Total energy + Delta-G solvation = -3972.580510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40166 -40.70751 -39.37626 -37.39487 -36.72262 -34.89429 -33.39249 -32.80485 -31.61408 -31.00687 -29.69450 -28.21259 -27.34976 -25.81682 -24.82694 -24.35740 -24.03637 -23.22089 -21.65573 -19.74791 -18.59822 -18.12385 -17.96885 -17.61445 -17.50656 -17.18658 -16.90016 -16.60255 -16.21482 -16.01234 -15.75500 -15.63164 -15.22219 -14.69789 -14.55236 -14.44781 -14.14086 -14.08643 -13.88130 -13.57250 -13.29434 -13.26735 -13.20739 -13.06141 -12.84330 -12.72804 -12.67268 -12.57989 -12.49051 -12.28237 -12.14549 -11.99083 -11.80870 -11.65796 -10.72732 -10.64411 -10.61895 -10.42184 -10.21798 -9.87495 -9.39371 -9.03315 -8.21797 -6.36595 0.25053 0.48233 1.35516 1.38495 1.50301 1.88783 2.25295 2.40773 2.69765 2.89376 3.07459 3.28195 3.51965 3.74260 3.90379 3.96780 4.02348 4.09202 4.13084 4.24337 4.30998 4.35105 4.37562 4.43234 4.46540 4.55034 4.60214 4.63751 4.64972 4.75156 4.83546 4.93106 4.94504 4.96741 5.00282 5.04864 5.07888 5.11044 5.24967 5.33088 5.36040 5.38783 5.60462 5.86131 5.90796 5.99981 6.08541 6.12072 6.18536 6.73265 6.86891 7.23335 7.30223 7.57486 8.85140 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003377 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.290618 B = 8288.916540 C = 9988.901595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.500 3.500 14 O -0.581 6.581 15 C 0.049 3.951 16 N -0.531 5.531 17 C 0.058 3.942 18 C 0.029 3.971 19 O -0.390 6.390 20 C 0.020 3.980 21 C 0.093 3.907 22 C 0.123 3.877 23 C -0.163 4.163 24 C -0.083 4.083 25 C -0.174 4.174 26 C 0.075 3.925 27 N -0.511 5.511 28 H 0.038 0.962 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.018 0.982 34 H -0.002 1.002 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.152 0.848 48 H 0.162 0.838 49 H 0.162 0.838 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -6.906 24.896 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.288 3.712 14 O -0.461 6.461 15 C -0.081 4.081 16 N -0.255 5.255 17 C -0.070 4.070 18 C -0.049 4.049 19 O -0.310 6.310 20 C -0.076 4.076 21 C -0.034 4.034 22 C -0.014 4.014 23 C -0.183 4.183 24 C -0.109 4.109 25 C -0.194 4.194 26 C -0.082 4.082 27 N -0.221 5.221 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.036 0.964 34 H 0.016 0.984 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.170 0.830 48 H 0.180 0.820 49 H 0.179 0.821 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.886 -6.415 24.073 26.131 hybrid contribution -0.322 0.398 -0.460 0.689 sum -8.209 -6.017 23.613 25.713 Atomic orbital electron populations 1.22133 0.94493 1.03466 1.01526 1.21725 0.95317 0.81518 1.03791 1.48248 1.64338 1.15114 1.06097 1.18645 0.95021 0.91705 0.80368 1.21777 1.00772 1.29267 1.06324 0.92880 1.25851 1.01915 0.94611 0.96755 1.70065 1.38430 1.32665 1.15651 0.85386 0.79039 0.78050 0.78442 1.19166 1.19250 1.20881 1.21156 0.76650 0.87231 0.86168 1.90610 1.48924 1.18847 1.87728 1.22050 1.03153 0.95165 0.87726 1.61470 1.43789 1.15806 1.04392 1.22285 0.87759 0.94876 1.02104 1.23260 0.98759 0.96484 0.86356 1.87844 1.40979 1.64950 1.37189 1.22965 0.87350 0.94667 1.02617 1.21453 1.00776 0.93634 0.87507 1.21247 0.89314 0.96098 0.94791 1.22295 1.02309 0.97777 0.95905 1.21992 0.94784 0.96100 0.97986 1.22453 0.95683 1.01031 1.00250 1.23139 1.01286 0.92798 0.90971 1.67459 1.10846 1.18761 1.25009 0.94304 0.88542 0.92335 0.91082 0.88439 0.96359 0.98422 0.92464 0.87026 0.88734 0.90104 0.90954 0.91597 0.92437 0.88139 0.93380 0.93408 0.90579 0.87156 0.83030 0.81995 0.82075 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 3.04 6.00 86.38 0.52 3.56 16 3 N -0.61 -26.19 2.46 -826.15 -2.03 -28.22 16 4 C 0.26 14.65 5.25 85.63 0.45 15.10 16 5 C -0.54 -32.17 9.38 25.60 0.24 -31.93 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.44 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 C 0.50 21.45 7.47 87.66 0.66 22.10 16 14 O -0.58 -31.19 14.23 -3.05 -0.04 -31.23 16 15 C 0.05 1.49 3.76 85.56 0.32 1.81 16 16 N -0.53 -16.61 4.30 -905.39 -3.89 -20.50 16 17 C 0.06 1.66 5.45 86.30 0.47 2.13 16 18 C 0.03 0.60 5.78 71.98 0.42 1.02 16 19 O -0.39 -6.59 6.12 -148.98 -0.91 -7.51 16 20 C 0.02 0.22 11.01 113.37 1.25 1.46 16 21 C 0.09 2.39 5.06 85.55 0.43 2.83 16 22 C 0.12 3.36 5.82 42.55 0.25 3.60 16 23 C -0.16 -3.48 8.27 22.36 0.19 -3.29 16 24 C -0.08 -1.45 10.18 22.47 0.23 -1.22 16 25 C -0.17 -3.15 10.11 22.36 0.23 -2.93 16 26 C 0.07 1.80 11.18 84.67 0.95 2.74 16 27 N -0.51 -15.65 10.27 -183.89 -1.89 -17.54 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.27 7.61 -2.39 -0.02 1.25 16 31 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 32 H 0.10 2.32 6.39 -2.39 -0.02 2.30 16 33 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 34 H 0.00 -0.15 7.23 -2.39 -0.02 -0.17 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.11 3.05 7.06 -2.38 -0.02 3.04 16 37 H 0.10 2.21 4.86 -2.39 -0.01 2.20 16 38 H 0.08 2.26 6.15 -2.39 -0.01 2.25 16 39 H 0.07 2.61 6.45 -2.39 -0.02 2.60 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.16 5.64 -2.39 -0.01 1.15 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.08 2.00 7.74 -2.39 -0.02 1.98 16 46 H 0.11 2.35 4.59 -2.39 -0.01 2.34 16 47 H 0.15 2.80 6.64 -2.91 -0.02 2.78 16 48 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 49 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 50 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -82.16 397.64 2.26 -79.89 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.93 Total: 19.18 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 7.79 Total: 14.81 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -7.52 Total: -123.41 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.96 Total: -38.74 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -82.16 2.26 -79.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287490268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.695 kcal (2) G-P(sol) polarization free energy of solvation -82.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds