Wall clock time and date at job start Tue Mar 31 2020 19:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47187 * 2 1 4 4 C 1.46495 * 120.00208 * 270.00162 * 3 2 1 5 5 C 1.50710 * 109.47207 * 270.00149 * 4 3 2 6 6 H 1.07994 * 119.99692 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99998 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47155 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47339 * 120.00037 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99601 * 9 7 5 13 13 C 1.34783 * 119.99697 * 90.00483 * 3 2 1 14 14 O 1.21281 * 119.99572 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99792 * 359.97438 * 13 3 2 16 16 H 1.08995 * 115.55642 * 34.33429 * 15 13 3 17 17 C 1.53006 * 117.49447 * 248.61873 * 15 13 3 18 18 C 1.52994 * 117.50127 * 0.02562 * 17 15 13 19 19 C 1.52999 * 60.00089 * 252.51546 * 17 15 13 20 20 H 1.09002 * 117.49803 * 107.49109 * 19 17 15 21 21 C 1.50700 * 117.51845 * 252.51832 * 19 17 15 22 22 O 1.21288 * 119.99910 * 68.71707 * 21 19 17 23 23 N 1.34770 * 119.99999 * 248.71846 * 21 19 17 24 24 C 1.46496 * 120.00437 * 0.02562 * 23 21 19 25 25 C 1.53000 * 109.47160 * 89.99904 * 24 23 21 26 26 C 1.46511 * 119.99717 * 179.97438 * 23 21 19 27 27 C 1.52998 * 109.46816 * 90.00231 * 26 23 21 28 28 C 1.47202 * 109.47054 * 180.02562 * 27 26 23 29 29 N 9.17607 * 117.25383 * 278.75299 * 13 1 2 30 30 H 1.08990 * 109.46999 * 59.99792 * 1 2 3 31 31 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46654 * 299.99824 * 1 2 3 33 33 H 1.09005 * 109.47092 * 240.00020 * 2 1 3 34 34 H 1.09007 * 109.47054 * 120.00493 * 2 1 3 35 35 H 1.09004 * 109.47123 * 29.99951 * 4 3 2 36 36 H 1.08998 * 109.47447 * 150.00357 * 4 3 2 37 37 H 0.97002 * 119.99643 * 180.02562 * 8 7 5 38 38 H 1.09003 * 117.49619 * 145.02243 * 17 15 13 39 39 H 1.09008 * 109.47363 * 351.37292 * 18 17 15 40 40 H 1.08996 * 109.47655 * 111.36922 * 18 17 15 41 41 H 1.09002 * 109.47392 * 231.37532 * 18 17 15 42 42 H 1.08997 * 109.47143 * 209.99860 * 24 23 21 43 43 H 1.09000 * 109.46919 * 330.00053 * 24 23 21 44 44 H 1.09003 * 109.47061 * 300.00481 * 25 24 23 45 45 H 1.09000 * 109.47083 * 60.00250 * 25 24 23 46 46 H 1.08997 * 109.46982 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.46674 * 209.99669 * 26 23 21 48 48 H 1.09000 * 109.47195 * 330.00141 * 26 23 21 49 49 H 1.08998 * 109.47040 * 299.99214 * 27 26 23 50 50 H 1.08991 * 109.47836 * 60.00065 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9134 2.0964 -3.4171 10 1 6.6003 1.2393 -2.4178 11 1 5.9203 1.4183 -4.7383 12 1 6.6215 3.3972 -3.5247 13 6 2.2431 2.0165 1.1673 14 8 2.6478 3.1598 1.1673 15 6 1.9914 1.3061 2.4723 16 1 2.2011 0.2366 2.4735 17 6 0.8251 1.7989 3.3313 18 6 0.0032 2.9746 2.7993 19 6 2.2655 2.0812 3.7627 20 1 2.6279 3.1048 3.6677 21 6 2.8048 1.3073 4.9381 22 8 3.0067 0.1156 4.8382 23 7 3.0625 1.9395 6.1000 24 6 2.8181 3.3789 6.2208 25 6 1.3864 3.6141 6.7063 26 6 3.5862 1.1870 7.2428 27 6 5.1155 1.1899 7.1977 28 6 5.6417 0.4333 8.3455 29 7 6.0517 -0.1479 9.2302 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6755 3.5172 -4.4434 38 1 0.2670 1.0533 3.8976 39 1 0.4915 3.3899 1.9176 40 1 -0.9953 2.6287 2.5323 41 1 -0.0721 3.7430 3.5687 42 1 3.5195 3.8077 6.9366 43 1 2.9548 3.8534 5.2491 44 1 0.6850 3.1851 5.9906 45 1 1.2496 3.1395 7.6780 46 1 1.2044 4.6850 6.7958 47 1 3.2492 1.6520 8.1692 48 1 3.2234 0.1601 7.1987 49 1 5.4526 0.7248 6.2713 50 1 5.4785 2.2167 7.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294773886.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:11 Heat of formation + Delta-G solvation = -23.242620 kcal Electronic energy + Delta-G solvation = -29648.209199 eV Core-core repulsion = 25676.580684 eV Total energy + Delta-G solvation = -3971.628515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75035 -39.28887 -37.36709 -36.49233 -36.11784 -35.15120 -32.82525 -32.71126 -30.16779 -30.06008 -28.84984 -27.54370 -25.82866 -24.24104 -23.63846 -22.96106 -22.03162 -21.06933 -18.99336 -18.14002 -18.01073 -17.68572 -16.61529 -16.40214 -16.01956 -15.44467 -15.32340 -15.25554 -14.90240 -14.35567 -14.25256 -14.12084 -13.91766 -13.37298 -13.25828 -13.20595 -13.03104 -12.95147 -12.82327 -12.71417 -12.35126 -12.29842 -12.18281 -12.03568 -11.95490 -11.60101 -11.53360 -11.41171 -11.37758 -11.22659 -10.87467 -10.72323 -10.57704 -10.23236 -10.21436 -10.12550 -9.83469 -9.60745 -9.10629 -8.92400 -8.43741 -7.66094 -6.04640 -4.08958 2.18523 2.37920 2.46474 2.63637 3.12324 3.30031 3.37684 3.42558 3.69587 3.84509 3.97550 4.27585 4.45453 4.54243 4.57517 4.62437 4.74193 4.81692 4.90528 4.95845 5.00860 5.07915 5.20649 5.28313 5.31372 5.34137 5.39267 5.47641 5.48680 5.53434 5.68154 5.71420 5.77495 5.81584 5.91346 5.97356 6.03623 6.13839 6.19013 6.28123 6.37791 6.54930 7.02683 7.06908 7.21363 7.42908 7.54947 7.92324 7.95629 8.23404 8.41978 8.89879 9.08060 9.56373 11.03391 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002963 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.982166 B = 9448.143394 C =10554.737103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.538 3.462 14 O -0.542 6.542 15 C -0.148 4.148 16 H 0.131 0.869 17 C -0.093 4.093 18 C -0.134 4.134 19 C -0.166 4.166 20 H 0.139 0.861 21 C 0.551 3.449 22 O -0.533 6.533 23 N -0.611 5.611 24 C 0.100 3.900 25 C -0.172 4.172 26 C 0.122 3.878 27 C -0.046 4.046 28 C 0.213 3.787 29 N -0.436 5.436 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -0.525 19.920 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.320 5.320 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.325 3.675 14 O -0.420 6.420 15 C -0.170 4.170 16 H 0.149 0.851 17 C -0.112 4.112 18 C -0.191 4.191 19 C -0.187 4.187 20 H 0.156 0.844 21 C 0.340 3.660 22 O -0.409 6.409 23 N -0.344 5.344 24 C -0.022 4.022 25 C -0.230 4.230 26 C -0.002 4.002 27 C -0.087 4.087 28 C -0.106 4.106 29 N -0.113 5.113 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.133 0.867 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.238 -1.327 20.970 21.918 hybrid contribution 0.975 0.054 -0.751 1.232 sum -5.263 -1.273 20.219 20.932 Atomic orbital electron populations 1.22198 0.96684 1.01384 1.02302 1.21460 0.93628 0.84078 1.02736 1.48155 1.63054 1.13326 1.07425 1.19289 0.96319 0.93581 0.78058 1.21484 0.96906 1.31715 1.06231 0.92385 1.24926 0.97834 0.94940 0.96396 1.69945 1.35568 1.33586 1.14349 0.86458 0.84686 0.78046 0.78338 1.19771 1.20990 1.20895 1.19150 0.78219 0.86205 0.83971 1.90652 1.46281 1.18015 1.87070 1.22565 1.03498 1.00904 0.90002 0.85103 1.22316 0.88199 1.00526 1.00163 1.21536 0.99377 0.96043 1.02174 1.22313 1.01230 1.01849 0.93343 0.84351 1.19777 0.76447 0.86953 0.82802 1.90707 1.52226 1.15187 1.82754 1.47848 1.65224 1.09574 1.11783 1.21717 0.97275 0.79785 1.03429 1.22209 0.96764 1.02282 1.01786 1.21259 0.90616 0.99199 0.89138 1.19719 0.96852 0.99945 0.92234 1.28921 0.93727 0.93709 0.94219 1.81214 1.08673 1.09807 1.11601 0.92215 0.92287 0.92796 0.90066 0.91461 0.94943 0.93866 0.92808 0.86997 0.90548 0.91785 0.91779 0.90065 0.89193 0.91780 0.92505 0.91259 0.89506 0.88854 0.86694 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.70 5.95 -4.04 -0.02 1.67 16 3 N -0.59 -12.13 2.46 -175.05 -0.43 -12.56 16 4 C 0.25 6.28 5.16 -5.19 -0.03 6.26 16 5 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.54 10.65 6.09 -10.98 -0.07 10.58 16 14 O -0.54 -12.62 14.89 5.56 0.08 -12.53 16 15 C -0.15 -2.22 4.80 -91.77 -0.44 -2.66 16 16 H 0.13 1.96 5.96 -51.93 -0.31 1.65 16 17 C -0.09 -1.07 6.11 -90.62 -0.55 -1.62 16 18 C -0.13 -1.53 10.03 37.15 0.37 -1.15 16 19 C -0.17 -2.06 4.52 -91.77 -0.41 -2.48 16 20 H 0.14 1.76 5.97 -51.93 -0.31 1.45 16 21 C 0.55 6.39 7.46 -10.99 -0.08 6.31 16 22 O -0.53 -7.82 15.84 5.55 0.09 -7.73 16 23 N -0.61 -4.79 2.47 -173.68 -0.43 -5.22 16 24 C 0.10 0.57 5.96 -4.04 -0.02 0.54 16 25 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 26 C 0.12 0.78 5.36 -4.04 -0.02 0.76 16 27 C -0.05 -0.27 6.03 -29.52 -0.18 -0.45 16 28 C 0.21 1.85 15.43 -20.79 -0.32 1.53 16 29 N -0.44 -5.16 18.53 42.12 0.78 -4.38 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.07 0.96 6.00 -51.93 -0.31 0.65 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.16 5.71 -51.92 -0.30 0.86 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 43 H 0.09 0.58 6.00 -51.93 -0.31 0.27 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 48 H 0.09 0.75 7.42 -51.93 -0.39 0.36 16 49 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 418.98 15.07 6.31 6.31 Total: -1.00 -35.33 418.98 -7.50 -42.83 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.18 Total: -1.45 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.44 Total: 3.53 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.66 Total: -47.69 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.33 -7.50 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294773886.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.586 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds