Wall clock time and date at job start Tue Mar 31 2020 19:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47187 * 2 1 4 4 C 1.46495 * 120.00208 * 270.00162 * 3 2 1 5 5 C 1.50710 * 109.47207 * 270.00149 * 4 3 2 6 6 H 1.07994 * 119.99692 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99998 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47155 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47339 * 120.00037 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99601 * 9 7 5 13 13 C 1.34783 * 119.99697 * 90.00483 * 3 2 1 14 14 O 1.21281 * 119.99572 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99792 * 359.97438 * 13 3 2 16 16 H 1.08995 * 115.55642 * 34.33429 * 15 13 3 17 17 C 1.53006 * 117.49447 * 248.61873 * 15 13 3 18 18 C 1.52994 * 117.50127 * 0.02562 * 17 15 13 19 19 C 1.52999 * 60.00089 * 252.51546 * 17 15 13 20 20 H 1.09002 * 117.49803 * 107.49109 * 19 17 15 21 21 C 1.50700 * 117.51845 * 252.51832 * 19 17 15 22 22 O 1.21288 * 119.99910 * 68.71707 * 21 19 17 23 23 N 1.34770 * 119.99999 * 248.71846 * 21 19 17 24 24 C 1.46496 * 120.00437 * 0.02562 * 23 21 19 25 25 C 1.53000 * 109.47160 * 89.99904 * 24 23 21 26 26 C 1.46511 * 119.99717 * 179.97438 * 23 21 19 27 27 C 1.52998 * 109.46816 * 90.00231 * 26 23 21 28 28 C 1.47202 * 109.47054 * 180.02562 * 27 26 23 29 29 N 9.17607 * 117.25383 * 278.75299 * 13 1 2 30 30 H 1.08990 * 109.46999 * 59.99792 * 1 2 3 31 31 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46654 * 299.99824 * 1 2 3 33 33 H 1.09005 * 109.47092 * 240.00020 * 2 1 3 34 34 H 1.09007 * 109.47054 * 120.00493 * 2 1 3 35 35 H 1.09004 * 109.47123 * 29.99951 * 4 3 2 36 36 H 1.08998 * 109.47447 * 150.00357 * 4 3 2 37 37 H 0.97002 * 119.99643 * 180.02562 * 8 7 5 38 38 H 1.09003 * 117.49619 * 145.02243 * 17 15 13 39 39 H 1.09008 * 109.47363 * 351.37292 * 18 17 15 40 40 H 1.08996 * 109.47655 * 111.36922 * 18 17 15 41 41 H 1.09002 * 109.47392 * 231.37532 * 18 17 15 42 42 H 1.08997 * 109.47143 * 209.99860 * 24 23 21 43 43 H 1.09000 * 109.46919 * 330.00053 * 24 23 21 44 44 H 1.09003 * 109.47061 * 300.00481 * 25 24 23 45 45 H 1.09000 * 109.47083 * 60.00250 * 25 24 23 46 46 H 1.08997 * 109.46982 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.46674 * 209.99669 * 26 23 21 48 48 H 1.09000 * 109.47195 * 330.00141 * 26 23 21 49 49 H 1.08998 * 109.47040 * 299.99214 * 27 26 23 50 50 H 1.08991 * 109.47836 * 60.00065 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9134 2.0964 -3.4171 10 1 6.6003 1.2393 -2.4178 11 1 5.9203 1.4183 -4.7383 12 1 6.6215 3.3972 -3.5247 13 6 2.2431 2.0165 1.1673 14 8 2.6478 3.1598 1.1673 15 6 1.9914 1.3061 2.4723 16 1 2.2011 0.2366 2.4735 17 6 0.8251 1.7989 3.3313 18 6 0.0032 2.9746 2.7993 19 6 2.2655 2.0812 3.7627 20 1 2.6279 3.1048 3.6677 21 6 2.8048 1.3073 4.9381 22 8 3.0067 0.1156 4.8382 23 7 3.0625 1.9395 6.1000 24 6 2.8181 3.3789 6.2208 25 6 1.3864 3.6141 6.7063 26 6 3.5862 1.1870 7.2428 27 6 5.1155 1.1899 7.1977 28 6 5.6417 0.4333 8.3455 29 7 6.0517 -0.1479 9.2302 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6755 3.5172 -4.4434 38 1 0.2670 1.0533 3.8976 39 1 0.4915 3.3899 1.9176 40 1 -0.9953 2.6287 2.5323 41 1 -0.0721 3.7430 3.5687 42 1 3.5195 3.8077 6.9366 43 1 2.9548 3.8534 5.2491 44 1 0.6850 3.1851 5.9906 45 1 1.2496 3.1395 7.6780 46 1 1.2044 4.6850 6.7958 47 1 3.2492 1.6520 8.1692 48 1 3.2234 0.1601 7.1987 49 1 5.4526 0.7248 6.2713 50 1 5.4785 2.2167 7.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294773886.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:11 Heat of formation + Delta-G solvation = -44.327793 kcal Electronic energy + Delta-G solvation = -29649.123521 eV Core-core repulsion = 25676.580684 eV Total energy + Delta-G solvation = -3972.542837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77399 -40.54084 -38.22105 -37.54999 -36.99629 -36.68634 -34.85493 -33.32733 -31.58401 -30.74880 -29.90060 -29.22588 -26.95286 -25.44734 -24.52400 -24.27445 -23.17420 -22.25305 -19.84276 -19.36331 -18.78745 -18.71709 -18.49084 -17.58520 -17.17106 -16.99363 -16.33487 -16.18419 -16.00049 -15.85663 -15.29120 -14.86902 -14.66389 -14.61541 -14.49513 -14.41693 -13.93008 -13.78785 -13.67610 -13.65469 -13.53599 -13.42380 -13.31284 -13.22687 -13.05367 -12.78197 -12.71178 -12.65445 -12.48148 -12.47793 -12.16346 -11.92573 -11.91484 -11.85102 -11.67460 -11.31248 -11.20321 -10.79041 -10.63369 -10.51440 -9.76543 -9.40295 -8.21471 -6.35840 1.30253 1.36858 1.38434 1.50667 1.64071 1.72257 1.78310 1.95464 2.31849 2.45646 2.85333 3.07719 3.09764 3.42191 3.61101 3.70690 3.89938 4.03263 4.05159 4.13395 4.19174 4.27214 4.34211 4.46546 4.47411 4.54074 4.58637 4.65590 4.78937 4.80950 4.90543 4.94369 4.95220 4.98082 5.01761 5.04730 5.08638 5.10802 5.16870 5.24165 5.39285 5.42759 5.52090 5.59973 5.60847 5.88188 6.08389 6.30507 6.55066 6.71457 6.82593 7.12466 7.29526 7.50618 8.85451 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002963 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.982166 B = 9448.143394 C =10554.737103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.598 5.598 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.279 1.279 13 C 0.535 3.465 14 O -0.587 6.587 15 C -0.167 4.167 16 H 0.134 0.866 17 C -0.063 4.063 18 C -0.132 4.132 19 C -0.157 4.157 20 H 0.134 0.866 21 C 0.552 3.448 22 O -0.568 6.568 23 N -0.598 5.598 24 C 0.094 3.906 25 C -0.170 4.170 26 C 0.122 3.878 27 C -0.039 4.039 28 C 0.242 3.758 29 N -0.494 5.494 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.022 0.978 36 H 0.002 0.998 37 H 0.267 0.733 38 H 0.139 0.861 39 H 0.034 0.966 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -0.749 22.029 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.195 1.195 12 H -0.205 1.205 13 C 0.324 3.676 14 O -0.469 6.469 15 C -0.188 4.188 16 H 0.152 0.848 17 C -0.082 4.082 18 C -0.189 4.189 19 C -0.179 4.179 20 H 0.151 0.849 21 C 0.341 3.659 22 O -0.447 6.447 23 N -0.329 5.329 24 C -0.028 4.028 25 C -0.228 4.228 26 C -0.002 4.002 27 C -0.080 4.080 28 C -0.075 4.075 29 N -0.172 5.172 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.076 0.924 38 H 0.157 0.843 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.095 0.905 49 H 0.124 0.876 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.584 -1.558 23.115 24.085 hybrid contribution 1.035 0.201 -1.392 1.746 sum -5.549 -1.356 21.724 22.462 Atomic orbital electron populations 1.22111 0.94153 1.03349 1.01905 1.21719 0.95708 0.81598 1.03241 1.48161 1.63548 1.14914 1.06203 1.18706 0.95103 0.91656 0.80216 1.21729 0.97943 1.31838 1.06534 0.93286 1.25804 1.02218 0.94498 0.96390 1.70052 1.37560 1.34226 1.14804 0.85409 0.79271 0.78065 0.78316 1.19435 1.19503 1.20481 1.19901 0.76759 0.85778 0.85155 1.90610 1.48209 1.20176 1.87893 1.22317 1.07685 1.00556 0.88284 0.84829 1.22452 0.87594 1.00381 0.97732 1.21531 0.99649 0.96574 1.01146 1.22337 1.02055 1.01152 0.92320 0.84856 1.19596 0.76480 0.86364 0.83500 1.90698 1.54068 1.16513 1.83458 1.47841 1.63670 1.10515 1.10877 1.21965 0.98718 0.78138 1.03935 1.22186 0.95771 1.03061 1.01756 1.21383 0.90664 0.98619 0.89559 1.19820 0.96522 1.01155 0.90481 1.29285 0.92221 0.92405 0.93625 1.81247 1.10632 1.11726 1.13597 0.94016 0.89047 0.91756 0.91259 0.89190 0.96039 0.98011 0.92391 0.84304 0.94714 0.90001 0.89383 0.86912 0.90218 0.93001 0.91682 0.90142 0.86353 0.90496 0.87624 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.10 3.24 5.95 86.38 0.51 3.75 16 3 N -0.60 -25.65 2.46 -826.12 -2.03 -27.67 16 4 C 0.26 14.27 5.16 85.64 0.44 14.71 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.57 5.46 84.65 0.46 1.04 16 8 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.53 21.92 6.09 87.66 0.53 22.46 16 14 O -0.59 -28.83 14.89 -3.03 -0.05 -28.88 16 15 C -0.17 -4.94 4.80 -11.54 -0.06 -4.99 16 16 H 0.13 3.89 5.96 -2.39 -0.01 3.88 16 17 C -0.06 -1.32 6.11 -10.79 -0.07 -1.39 16 18 C -0.13 -2.82 10.03 71.98 0.72 -2.10 16 19 C -0.16 -3.74 4.52 -11.54 -0.05 -3.79 16 20 H 0.13 3.35 5.97 -2.39 -0.01 3.33 16 21 C 0.55 11.86 7.46 87.66 0.65 12.51 16 22 O -0.57 -16.01 15.84 -3.06 -0.05 -16.06 16 23 N -0.60 -7.75 2.47 -821.81 -2.03 -9.78 16 24 C 0.09 0.75 5.96 86.38 0.51 1.27 16 25 C -0.17 -1.17 10.24 71.98 0.74 -0.43 16 26 C 0.12 1.19 5.36 86.38 0.46 1.65 16 27 C -0.04 -0.36 6.03 28.79 0.17 -0.18 16 28 C 0.24 3.80 15.43 89.45 1.38 5.18 16 29 N -0.49 -11.34 18.53 20.00 0.37 -10.97 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 34 H 0.09 2.50 6.00 -2.38 -0.01 2.49 16 35 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 36 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 37 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.03 1.06 5.71 -2.38 -0.01 1.05 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.11 0.25 8.07 -2.39 -0.02 0.23 16 43 H 0.08 0.86 6.00 -2.39 -0.01 0.85 16 44 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.12 0.47 8.07 -2.39 -0.02 0.45 16 48 H 0.08 1.08 7.42 -2.39 -0.02 1.06 16 49 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -81.99 418.98 6.86 -75.13 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.93 Total: 11.45 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 7.40 Total: 15.11 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.41 Total: -103.98 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.09 Total: -44.93 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -81.99 6.86 -75.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294773886.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.805 kcal (2) G-P(sol) polarization free energy of solvation -81.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds