Wall clock time and date at job start Tue Mar 31 2020 19:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46947 * 2 1 4 4 O 1.42903 * 109.46493 * 240.00253 * 2 1 3 5 5 C 1.35912 * 116.99783 * 92.72618 * 4 2 1 6 6 C 1.39137 * 120.47543 * 354.55280 * 5 4 2 7 7 C 1.38536 * 118.37579 * 180.02562 * 6 5 4 8 8 C 1.38251 * 119.22002 * 0.02562 * 7 6 5 9 9 N 1.31849 * 120.89089 * 359.97438 * 8 7 6 10 10 C 1.31842 * 121.77707 * 359.97438 * 9 8 7 11 11 C 1.50689 * 109.47021 * 120.00500 * 2 1 3 12 12 O 1.21282 * 120.00230 * 108.34979 * 11 2 1 13 13 N 1.34778 * 120.00375 * 288.34512 * 11 2 1 14 14 C 1.46504 * 119.99722 * 5.42966 * 13 11 2 15 15 C 1.50700 * 109.47106 * 95.46214 * 14 13 11 16 16 H 1.07998 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99791 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46910 * 60.00367 * 19 17 15 21 21 H 1.48493 * 109.47169 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46940 * 300.00336 * 19 17 15 23 23 C 1.46497 * 120.00385 * 185.42587 * 13 11 2 24 24 C 1.53007 * 109.47127 * 90.00164 * 23 13 11 25 25 C 1.52994 * 109.47186 * 179.97438 * 24 23 13 26 26 N 1.46900 * 109.46825 * 180.02562 * 25 24 23 27 27 C 1.46894 * 111.00297 * 66.04862 * 26 25 24 28 28 C 1.46903 * 110.99779 * 190.00284 * 26 25 24 29 29 H 1.09000 * 109.46860 * 299.10157 * 1 2 3 30 30 H 1.08999 * 109.47352 * 59.09719 * 1 2 3 31 31 H 1.08996 * 109.47567 * 179.09839 * 1 2 3 32 32 H 1.07998 * 120.81495 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.38880 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.55814 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.65657 * 179.97438 * 10 9 8 36 36 H 1.08991 * 109.47128 * 215.47014 * 14 13 11 37 37 H 1.09009 * 109.46855 * 335.46591 * 14 13 11 38 38 H 0.97006 * 120.00085 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.47173 * 209.99876 * 23 13 11 40 40 H 1.08997 * 109.47595 * 330.00366 * 23 13 11 41 41 H 1.09004 * 109.46860 * 300.00245 * 24 23 13 42 42 H 1.09006 * 109.46693 * 59.99793 * 24 23 13 43 43 H 1.08997 * 109.47210 * 299.99771 * 25 24 23 44 44 H 1.08997 * 109.47500 * 60.00224 * 25 24 23 45 45 H 1.08999 * 109.47611 * 59.99587 * 27 26 25 46 46 H 1.08997 * 109.47494 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.47329 * 299.99619 * 27 26 25 48 48 H 1.08994 * 109.47446 * 59.99503 * 28 26 25 49 49 H 1.09001 * 109.47143 * 180.02562 * 28 26 25 50 50 H 1.08999 * 109.47062 * 299.99385 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.2661 0.0927 -2.2588 6 6 1.9637 1.4508 -2.2559 7 6 2.2465 2.1907 -3.3925 8 6 2.8148 1.5606 -4.4840 9 7 3.0891 0.2713 -4.4542 10 6 2.8366 -0.4679 -3.3921 11 6 2.0323 -0.7105 1.2303 12 8 2.5462 -1.8046 1.1315 13 7 1.9106 -0.1301 2.4406 14 6 1.1850 1.1354 2.5765 15 6 -0.2408 0.8564 2.9770 16 1 -0.5731 -0.1616 3.1168 17 6 -1.1207 1.9009 3.1660 18 7 -0.7159 3.1407 2.9962 19 14 -2.8878 1.5552 3.6631 20 1 -2.9047 0.8328 4.9604 21 1 -3.6230 2.8380 3.8019 22 1 -3.5403 0.7202 2.6229 23 6 2.5038 -0.7646 3.6203 24 6 3.9358 -0.2587 3.8058 25 6 4.5551 -0.9208 5.0381 26 7 5.9297 -0.4346 5.2164 27 6 5.9433 0.9971 5.5451 28 6 6.6360 -1.2164 6.2401 29 1 -0.3633 0.4998 0.8979 30 1 -0.3634 0.5278 -0.8818 31 1 -0.3634 -1.0275 -0.0162 32 1 1.5194 1.9169 -1.3889 33 1 2.0248 3.2472 -3.4259 34 1 3.0371 2.1320 -5.3730 35 1 3.0749 -1.5212 -3.4052 36 1 1.6636 1.7485 3.3400 37 1 1.1977 1.6656 1.6241 38 1 -1.3348 3.8756 3.1295 39 1 1.9135 -0.5157 4.5022 40 1 2.5153 -1.8460 3.4842 41 1 4.5261 -0.5075 2.9238 42 1 3.9242 0.8228 3.9419 43 1 3.9647 -0.6715 5.9198 44 1 4.5666 -2.0022 4.9024 45 1 5.3912 1.1629 6.4702 46 1 6.9731 1.3312 5.6713 47 1 5.4757 1.5598 4.7371 48 1 6.6719 -2.2629 5.9375 49 1 7.6510 -0.8352 6.3524 50 1 6.1091 -1.1308 7.1904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344381345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:23 Heat of formation + Delta-G solvation = -29.258883 kcal Electronic energy + Delta-G solvation = -29695.815387 eV Core-core repulsion = 25723.925987 eV Total energy + Delta-G solvation = -3971.889400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65698 -39.44969 -37.92149 -37.41614 -35.33641 -33.25481 -32.25714 -32.08089 -31.00597 -29.70909 -27.66206 -27.53240 -26.18886 -24.35718 -23.60228 -23.16070 -23.00129 -21.76114 -20.65450 -18.71503 -18.33522 -16.91112 -16.66277 -16.48786 -16.06804 -15.72154 -15.42841 -15.31977 -15.04717 -14.71381 -14.59635 -14.26431 -14.01566 -13.85080 -13.60170 -13.33455 -13.08765 -12.64149 -12.49284 -12.43465 -12.26239 -12.06149 -11.81463 -11.80865 -11.65913 -11.56545 -11.32442 -11.20548 -11.06535 -11.00144 -10.79870 -10.74323 -10.36409 -10.17118 -9.90969 -9.73127 -9.53238 -9.11904 -8.71911 -8.37408 -8.27006 -7.89013 -6.37014 -4.44365 1.19687 1.32668 2.95560 3.13425 3.15107 3.19517 3.24629 3.85400 3.86978 4.09557 4.19679 4.57120 4.73575 4.88418 4.95270 4.99042 5.04999 5.12179 5.12706 5.24756 5.28260 5.30726 5.36190 5.45931 5.52556 5.61585 5.64379 5.74976 5.76372 5.76940 5.85065 5.96477 6.08474 6.10928 6.12728 6.19807 6.24376 6.40181 6.49696 6.53544 6.61333 6.89004 7.00592 7.02489 7.04280 7.29959 7.45367 7.58025 7.84212 8.00789 8.13641 8.59664 8.81811 9.22490 10.68582 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006608 B = 0.004279 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4236.356380 B = 6541.928459 C = 9618.192336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.072 3.928 3 H 0.096 0.904 4 O -0.283 6.283 5 C 0.093 3.907 6 C -0.170 4.170 7 C -0.128 4.128 8 C 0.045 3.955 9 N -0.450 5.450 10 C 0.068 3.932 11 C 0.521 3.479 12 O -0.549 6.549 13 N -0.590 5.590 14 C 0.232 3.768 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.069 3.931 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.124 3.876 24 C -0.130 4.130 25 C 0.059 3.941 26 N -0.549 5.549 27 C 0.021 3.979 28 C 0.025 3.975 29 H 0.137 0.863 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.268 0.732 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -0.723 -1.846 7.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.013 3.987 3 H 0.113 0.887 4 O -0.194 6.194 5 C 0.044 3.956 6 C -0.197 4.197 7 C -0.148 4.148 8 C -0.111 4.111 9 N -0.159 5.159 10 C -0.091 4.091 11 C 0.307 3.693 12 O -0.427 6.427 13 N -0.321 5.321 14 C 0.113 3.887 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.000 4.000 24 C -0.169 4.169 25 C -0.069 4.069 26 N -0.273 5.273 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.466 -1.746 -3.005 9.151 hybrid contribution -1.973 0.896 1.969 2.928 sum 6.493 -0.851 -1.036 6.630 Atomic orbital electron populations 1.22755 0.91279 1.04033 1.06886 1.22363 0.97032 0.96417 0.82909 0.88664 1.86207 1.79688 1.34784 1.18760 1.20310 0.95220 0.90739 0.89314 1.21912 1.03502 0.93558 1.00705 1.21995 0.98286 1.01213 0.93291 1.22586 0.99036 0.90919 0.98598 1.67693 1.15323 1.07109 1.25797 1.22187 0.98969 1.00813 0.87131 1.19911 0.79058 0.85809 0.84500 1.90638 1.45502 1.20201 1.86395 1.48046 1.53062 1.25611 1.05429 1.19564 0.91251 0.79479 0.98440 1.21393 0.94715 0.93628 1.48212 0.91656 1.24950 0.99134 0.94811 0.94657 1.69903 1.36146 0.98509 1.47671 0.86585 0.83903 0.77761 0.79539 1.19985 1.21039 1.19820 1.21219 0.92333 0.98044 0.88414 1.21952 0.96235 1.00680 0.97984 1.22064 0.87478 0.99965 0.97412 1.61967 1.16416 1.03510 1.45368 1.22438 1.01519 0.88769 0.99982 1.22365 0.98498 0.98703 0.92757 0.84515 0.92448 0.91956 0.83645 0.84558 0.82804 0.82028 0.94429 0.94449 0.92192 0.90143 0.90730 0.91176 0.91629 0.94602 0.90699 0.95626 0.91751 0.90793 0.91419 0.91615 0.95827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.50 9.16 37.16 0.34 -3.16 16 2 C 0.07 1.32 1.78 -27.89 -0.05 1.27 16 3 H 0.10 1.65 4.71 -51.93 -0.24 1.41 16 4 O -0.28 -5.21 9.35 -39.10 -0.37 -5.58 16 5 C 0.09 1.49 6.69 -39.07 -0.26 1.23 16 6 C -0.17 -2.44 8.85 -39.14 -0.35 -2.79 16 7 C -0.13 -1.55 10.11 -39.47 -0.40 -1.94 16 8 C 0.05 0.56 11.18 -17.54 -0.20 0.36 16 9 N -0.45 -6.52 10.36 -13.12 -0.14 -6.66 16 10 C 0.07 1.02 11.14 -17.37 -0.19 0.83 16 11 C 0.52 10.72 7.03 -10.99 -0.08 10.64 16 12 O -0.55 -12.60 16.09 -14.08 -0.23 -12.83 16 13 N -0.59 -11.61 2.46 -175.06 -0.43 -12.04 16 14 C 0.23 4.96 4.66 -5.19 -0.02 4.94 16 15 C -0.54 -12.60 6.81 -34.44 -0.23 -12.84 16 16 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -22.20 13.29 55.43 0.74 -21.47 16 19 Si 0.90 19.06 29.54 -169.99 -5.02 14.04 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.12 2.15 5.47 -4.04 -0.02 2.13 16 24 C -0.13 -2.00 5.46 -26.73 -0.15 -2.15 16 25 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 26 N -0.55 -6.99 5.02 -251.27 -1.26 -8.26 16 27 C 0.02 0.25 9.32 60.06 0.56 0.80 16 28 C 0.03 0.26 9.57 60.07 0.57 0.83 16 29 H 0.14 2.79 3.92 -51.93 -0.20 2.59 16 30 H 0.06 0.94 7.93 -51.93 -0.41 0.52 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.15 2.04 5.98 -52.49 -0.31 1.73 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 37 H 0.04 0.81 5.53 -51.92 -0.29 0.52 16 38 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 40 H 0.07 1.33 7.35 -51.93 -0.38 0.94 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.03 6.55 -51.93 -0.34 0.69 16 43 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 44 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 48 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 49 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 50 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -27.97 403.10 -9.19 -37.16 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.97 Total: 7.09 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.59 Total: 2.47 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -1.09 Total: -48.42 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.59 Total: -18.41 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.97 -9.19 -37.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344381345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.903 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds