Wall clock time and date at job start Tue Mar 31 2020 19:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46947 * 2 1 4 4 O 1.42903 * 109.46493 * 240.00253 * 2 1 3 5 5 C 1.35912 * 116.99783 * 92.72618 * 4 2 1 6 6 C 1.39137 * 120.47543 * 354.55280 * 5 4 2 7 7 C 1.38536 * 118.37579 * 180.02562 * 6 5 4 8 8 C 1.38251 * 119.22002 * 0.02562 * 7 6 5 9 9 N 1.31849 * 120.89089 * 359.97438 * 8 7 6 10 10 C 1.31842 * 121.77707 * 359.97438 * 9 8 7 11 11 C 1.50689 * 109.47021 * 120.00500 * 2 1 3 12 12 O 1.21282 * 120.00230 * 108.34979 * 11 2 1 13 13 N 1.34778 * 120.00375 * 288.34512 * 11 2 1 14 14 C 1.46504 * 119.99722 * 5.42966 * 13 11 2 15 15 C 1.50700 * 109.47106 * 95.46214 * 14 13 11 16 16 H 1.07998 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99791 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46910 * 60.00367 * 19 17 15 21 21 H 1.48493 * 109.47169 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46940 * 300.00336 * 19 17 15 23 23 C 1.46497 * 120.00385 * 185.42587 * 13 11 2 24 24 C 1.53007 * 109.47127 * 90.00164 * 23 13 11 25 25 C 1.52994 * 109.47186 * 179.97438 * 24 23 13 26 26 N 1.46900 * 109.46825 * 180.02562 * 25 24 23 27 27 C 1.46894 * 111.00297 * 66.04862 * 26 25 24 28 28 C 1.46903 * 110.99779 * 190.00284 * 26 25 24 29 29 H 1.09000 * 109.46860 * 299.10157 * 1 2 3 30 30 H 1.08999 * 109.47352 * 59.09719 * 1 2 3 31 31 H 1.08996 * 109.47567 * 179.09839 * 1 2 3 32 32 H 1.07998 * 120.81495 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.38880 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.55814 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.65657 * 179.97438 * 10 9 8 36 36 H 1.08991 * 109.47128 * 215.47014 * 14 13 11 37 37 H 1.09009 * 109.46855 * 335.46591 * 14 13 11 38 38 H 0.97006 * 120.00085 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.47173 * 209.99876 * 23 13 11 40 40 H 1.08997 * 109.47595 * 330.00366 * 23 13 11 41 41 H 1.09004 * 109.46860 * 300.00245 * 24 23 13 42 42 H 1.09006 * 109.46693 * 59.99793 * 24 23 13 43 43 H 1.08997 * 109.47210 * 299.99771 * 25 24 23 44 44 H 1.08997 * 109.47500 * 60.00224 * 25 24 23 45 45 H 1.08999 * 109.47611 * 59.99587 * 27 26 25 46 46 H 1.08997 * 109.47494 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.47329 * 299.99619 * 27 26 25 48 48 H 1.08994 * 109.47446 * 59.99503 * 28 26 25 49 49 H 1.09001 * 109.47143 * 180.02562 * 28 26 25 50 50 H 1.08999 * 109.47062 * 299.99385 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.2661 0.0927 -2.2588 6 6 1.9637 1.4508 -2.2559 7 6 2.2465 2.1907 -3.3925 8 6 2.8148 1.5606 -4.4840 9 7 3.0891 0.2713 -4.4542 10 6 2.8366 -0.4679 -3.3921 11 6 2.0323 -0.7105 1.2303 12 8 2.5462 -1.8046 1.1315 13 7 1.9106 -0.1301 2.4406 14 6 1.1850 1.1354 2.5765 15 6 -0.2408 0.8564 2.9770 16 1 -0.5731 -0.1616 3.1168 17 6 -1.1207 1.9009 3.1660 18 7 -0.7159 3.1407 2.9962 19 14 -2.8878 1.5552 3.6631 20 1 -2.9047 0.8328 4.9604 21 1 -3.6230 2.8380 3.8019 22 1 -3.5403 0.7202 2.6229 23 6 2.5038 -0.7646 3.6203 24 6 3.9358 -0.2587 3.8058 25 6 4.5551 -0.9208 5.0381 26 7 5.9297 -0.4346 5.2164 27 6 5.9433 0.9971 5.5451 28 6 6.6360 -1.2164 6.2401 29 1 -0.3633 0.4998 0.8979 30 1 -0.3634 0.5278 -0.8818 31 1 -0.3634 -1.0275 -0.0162 32 1 1.5194 1.9169 -1.3889 33 1 2.0248 3.2472 -3.4259 34 1 3.0371 2.1320 -5.3730 35 1 3.0749 -1.5212 -3.4052 36 1 1.6636 1.7485 3.3400 37 1 1.1977 1.6656 1.6241 38 1 -1.3348 3.8756 3.1295 39 1 1.9135 -0.5157 4.5022 40 1 2.5153 -1.8460 3.4842 41 1 4.5261 -0.5075 2.9238 42 1 3.9242 0.8228 3.9419 43 1 3.9647 -0.6715 5.9198 44 1 4.5666 -2.0022 4.9024 45 1 5.3912 1.1629 6.4702 46 1 6.9731 1.3312 5.6713 47 1 5.4757 1.5598 4.7371 48 1 6.6719 -2.2629 5.9375 49 1 7.6510 -0.8352 6.3524 50 1 6.1091 -1.1308 7.1904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344381345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:22 Heat of formation + Delta-G solvation = -44.744641 kcal Electronic energy + Delta-G solvation = -29696.486900 eV Core-core repulsion = 25723.925987 eV Total energy + Delta-G solvation = -3972.560913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93413 -40.87623 -39.14283 -38.55627 -36.99257 -34.88533 -33.76064 -33.18726 -32.30611 -30.90236 -29.31295 -28.49851 -27.49601 -25.67469 -25.01995 -24.63561 -24.13765 -23.00010 -21.79549 -20.24458 -19.61327 -18.57229 -18.14109 -17.78228 -17.42019 -17.02293 -16.72711 -16.51595 -16.30496 -16.19891 -15.80633 -15.42488 -15.26565 -15.06076 -14.79070 -14.69550 -14.47651 -14.15972 -14.03619 -13.62903 -13.36902 -13.29634 -13.20751 -13.10496 -12.87964 -12.72514 -12.65403 -12.60982 -12.43980 -12.38462 -12.34638 -12.22463 -12.00260 -11.71576 -11.51484 -10.88155 -10.71001 -10.60306 -10.52101 -9.56698 -9.44373 -9.32938 -8.21719 -6.33295 0.13759 0.22501 1.43862 1.46240 1.50747 1.53563 1.61000 2.38015 2.53350 2.80087 3.03069 3.09006 3.43895 3.55864 3.60051 3.77591 3.89995 3.93087 3.98570 4.10664 4.15359 4.21665 4.32629 4.37305 4.43575 4.49733 4.60005 4.65420 4.67359 4.71327 4.73977 4.78856 4.82607 4.84904 4.99422 5.00524 5.06079 5.10823 5.12046 5.15103 5.24109 5.39354 5.49443 5.63990 5.76806 6.01888 6.03770 6.10337 6.16295 6.46175 6.76161 6.94270 7.16028 7.36655 8.83147 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006608 B = 0.004279 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4236.356380 B = 6541.928459 C = 9618.192336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.105 0.895 4 O -0.303 6.303 5 C 0.065 3.935 6 C -0.176 4.176 7 C -0.120 4.120 8 C 0.052 3.948 9 N -0.466 5.466 10 C 0.058 3.942 11 C 0.514 3.486 12 O -0.578 6.578 13 N -0.589 5.589 14 C 0.246 3.754 15 C -0.541 4.541 16 H 0.056 0.944 17 C 0.035 3.965 18 N -0.910 5.910 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.121 3.879 24 C -0.114 4.114 25 C 0.065 3.935 26 N -0.566 5.566 27 C 0.022 3.978 28 C 0.025 3.975 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.192 0.808 35 H 0.165 0.835 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.029 0.971 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 0.284 -2.288 8.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 H 0.122 0.878 4 O -0.215 6.215 5 C 0.017 3.983 6 C -0.203 4.203 7 C -0.139 4.139 8 C -0.105 4.105 9 N -0.175 5.175 10 C -0.100 4.100 11 C 0.302 3.698 12 O -0.458 6.458 13 N -0.319 5.319 14 C 0.126 3.874 15 C -0.579 4.579 16 H 0.074 0.926 17 C -0.168 4.168 18 N -0.548 5.548 19 Si 0.771 3.229 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.002 4.002 24 C -0.153 4.153 25 C -0.063 4.063 26 N -0.290 5.290 27 C -0.126 4.126 28 C -0.123 4.123 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.189 0.811 34 H 0.209 0.791 35 H 0.183 0.817 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.637 -0.747 -3.436 9.326 hybrid contribution -1.962 0.630 2.019 2.885 sum 6.675 -0.117 -1.417 6.825 Atomic orbital electron populations 1.22597 0.91185 1.03530 1.06625 1.22204 0.96917 0.96428 0.82420 0.87792 1.86165 1.80437 1.35622 1.19235 1.20507 0.97159 0.91616 0.88983 1.22062 1.03490 0.93033 1.01685 1.22383 0.96816 1.02703 0.92031 1.23274 0.97144 0.90301 0.99792 1.67763 1.15944 1.08321 1.25474 1.22294 0.99164 1.01334 0.87191 1.20353 0.78595 0.85585 0.85288 1.90610 1.46914 1.21460 1.86860 1.48084 1.52702 1.25093 1.06050 1.19304 0.90483 0.79821 0.97804 1.21472 0.95543 0.93111 1.47772 0.92589 1.25474 1.01878 0.94655 0.94747 1.69972 1.37099 0.99046 1.48696 0.85798 0.80544 0.77490 0.79067 1.20041 1.20879 1.19610 1.21342 0.93468 0.97680 0.87685 1.21762 0.94682 1.00494 0.98366 1.21953 0.88162 0.99877 0.96308 1.61953 1.15876 1.04338 1.46867 1.22445 1.02507 0.88114 0.99573 1.22421 0.98933 0.98626 0.92290 0.86473 0.90643 0.92617 0.83699 0.81093 0.79133 0.81738 0.95627 0.94548 0.92154 0.89823 0.91224 0.93153 0.91997 0.93954 0.90359 0.95255 0.90132 0.92081 0.91057 0.90252 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.67 9.16 71.98 0.66 -6.01 16 2 C 0.08 2.97 1.78 29.85 0.05 3.02 16 3 H 0.10 3.64 4.71 -2.39 -0.01 3.63 16 4 O -0.30 -11.35 9.35 -73.78 -0.69 -12.04 16 5 C 0.07 2.08 6.69 22.60 0.15 2.23 16 6 C -0.18 -4.83 8.85 22.56 0.20 -4.63 16 7 C -0.12 -2.55 10.11 22.34 0.23 -2.32 16 8 C 0.05 1.12 11.18 84.69 0.95 2.07 16 9 N -0.47 -12.78 10.36 -195.44 -2.02 -14.80 16 10 C 0.06 1.72 11.14 84.80 0.94 2.67 16 11 C 0.51 21.69 7.03 87.65 0.62 22.31 16 12 O -0.58 -27.31 16.09 15.74 0.25 -27.06 16 13 N -0.59 -23.67 2.46 -826.16 -2.03 -25.70 16 14 C 0.25 10.65 4.66 85.63 0.40 11.04 16 15 C -0.54 -25.28 6.81 25.60 0.17 -25.10 16 16 H 0.06 2.70 7.81 -2.91 -0.02 2.67 16 17 C 0.03 1.64 5.46 84.65 0.46 2.10 16 18 N -0.91 -45.40 13.29 21.45 0.28 -45.11 16 19 Si 0.95 38.66 29.54 68.60 2.03 40.68 16 20 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 C 0.12 4.30 5.47 86.38 0.47 4.77 16 24 C -0.11 -3.59 5.46 30.59 0.17 -3.42 16 25 C 0.07 1.71 4.96 86.30 0.43 2.14 16 26 N -0.57 -13.88 5.02 -948.89 -4.76 -18.64 16 27 C 0.02 0.48 9.32 127.69 1.19 1.67 16 28 C 0.03 0.47 9.57 127.69 1.22 1.69 16 29 H 0.12 4.81 3.92 -2.39 -0.01 4.80 16 30 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.15 3.93 5.98 -2.91 -0.02 3.91 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.17 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.03 1.17 8.11 -2.39 -0.02 1.15 16 37 H 0.04 1.59 5.53 -2.38 -0.01 1.58 16 38 H 0.27 12.90 8.31 -92.70 -0.77 12.13 16 39 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 40 H 0.07 2.54 7.35 -2.39 -0.02 2.52 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.06 1.98 6.55 -2.38 -0.02 1.96 16 43 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 44 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 45 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 47 H 0.06 1.49 6.47 -2.39 -0.02 1.48 16 48 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 49 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 50 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -59.65 403.10 2.30 -57.36 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.93 Total: 31.06 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 8.31 Total: 14.24 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -8.53 Total: -104.25 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.44 Total: -39.10 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.68 kcal Total: -59.65 2.30 -57.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344381345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.614 kcal (2) G-P(sol) polarization free energy of solvation -59.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds