Wall clock time and date at job start Tue Mar 31 2020 19:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46884 * 2 1 4 4 C 1.37097 * 119.99687 * 266.70793 * 3 2 1 5 5 H 1.07994 * 120.00217 * 132.18964 * 4 3 2 6 6 C 1.38955 * 119.99995 * 312.19194 * 4 3 2 7 7 N 1.31416 * 119.99647 * 3.02647 * 6 4 3 8 8 Si 1.86797 * 120.00108 * 183.02872 * 6 4 3 9 9 H 1.48500 * 109.47117 * 59.99518 * 8 6 4 10 10 H 1.48497 * 109.47054 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47123 * 299.99814 * 8 6 4 12 12 C 1.34771 * 120.00202 * 86.70700 * 3 2 1 13 13 O 1.21299 * 119.99774 * 182.93955 * 12 3 2 14 14 C 1.50699 * 119.99940 * 2.93403 * 12 3 2 15 15 H 1.08994 * 110.06121 * 354.71627 * 14 12 3 16 16 C 1.53884 * 110.02717 * 116.13407 * 14 12 3 17 17 C 1.54266 * 106.59655 * 119.28527 * 16 14 12 18 18 H 1.08996 * 110.48286 * 264.92618 * 17 16 14 19 19 C 1.53003 * 110.48461 * 142.28381 * 17 16 14 20 20 C 1.54890 * 104.19746 * 23.60771 * 17 16 14 21 21 C 1.54265 * 110.03340 * 233.29433 * 14 12 3 22 22 H 1.09007 * 110.48350 * 98.29911 * 21 14 12 23 23 C 1.50696 * 110.48902 * 335.78895 * 21 14 12 24 24 O 1.21279 * 120.00045 * 273.36562 * 23 21 14 25 25 N 1.34780 * 119.99933 * 93.36640 * 23 21 14 26 26 C 1.46496 * 120.00169 * 5.21014 * 25 23 21 27 27 C 1.53006 * 109.46659 * 94.87077 * 26 25 23 28 28 C 1.46500 * 119.99694 * 185.21808 * 25 23 21 29 29 C 1.47201 * 109.46902 * 269.99420 * 28 25 23 30 30 N 8.13036 * 69.95387 * 23.65063 * 2 1 3 31 31 H 1.09003 * 109.47034 * 302.41872 * 1 2 3 32 32 H 1.08994 * 109.47412 * 62.42503 * 1 2 3 33 33 H 1.09007 * 109.46509 * 182.42149 * 1 2 3 34 34 H 1.08990 * 109.47373 * 239.99758 * 2 1 3 35 35 H 1.09002 * 109.46981 * 119.99211 * 2 1 3 36 36 H 0.96995 * 119.99237 * 179.97438 * 7 6 4 37 37 H 1.09004 * 110.02531 * 238.56904 * 16 14 12 38 38 H 1.08994 * 110.03259 * 359.95186 * 16 14 12 39 39 H 1.09005 * 109.46707 * 61.45099 * 19 17 16 40 40 H 1.08997 * 109.47118 * 181.44815 * 19 17 16 41 41 H 1.08998 * 109.47573 * 301.45723 * 19 17 16 42 42 H 1.09004 * 110.75029 * 203.74092 * 20 17 16 43 43 H 1.09006 * 110.75452 * 80.37499 * 20 17 16 44 44 H 1.08993 * 109.47280 * 334.87624 * 26 25 23 45 45 H 1.09001 * 109.47416 * 214.86668 * 26 25 23 46 46 H 1.08998 * 109.47146 * 175.18883 * 27 26 25 47 47 H 1.08993 * 109.47101 * 55.18871 * 27 26 25 48 48 H 1.08995 * 109.46979 * 295.18444 * 27 26 25 49 49 H 1.08998 * 109.47431 * 29.99887 * 28 25 23 50 50 H 1.09004 * 109.47364 * 150.00229 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3111 2.0048 -1.1854 5 1 1.9384 2.9998 -1.3786 6 6 3.0872 1.3564 -2.1383 7 7 3.4909 0.1235 -1.9287 8 14 3.5569 2.2373 -3.7171 9 1 4.3363 3.4582 -3.3897 10 1 4.3816 1.3355 -4.5606 11 1 2.3264 2.6189 -4.4559 12 6 2.1797 2.0390 1.1652 13 8 2.5329 3.1994 1.1627 14 6 1.9213 1.3328 2.4711 15 1 1.5252 0.3347 2.2844 16 6 3.2232 1.2392 3.2863 17 6 2.9726 1.9986 4.6055 18 1 3.3266 3.0265 4.5271 19 6 3.6553 1.2832 5.7731 20 6 1.4334 1.9667 4.7757 21 6 0.9252 2.1457 3.3235 22 1 -0.0830 1.7450 3.2179 23 6 0.9574 3.5998 2.9290 24 8 1.7646 4.3484 3.4378 25 7 0.0892 4.0682 2.0107 26 6 -0.9590 3.1931 1.4802 27 6 -2.2489 3.4020 2.2763 28 6 0.1940 5.4526 1.5429 29 6 -0.6249 6.3239 2.4014 30 7 -1.2569 6.9963 3.0640 31 1 -0.3633 0.5509 0.8675 32 1 -0.3634 0.4757 -0.9109 33 1 -0.3632 -1.0269 0.0434 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 4.0323 -0.3292 -2.5941 37 1 3.4587 0.1956 3.4950 38 1 4.0419 1.7039 2.7369 39 1 4.7317 1.2567 5.6035 40 1 3.4465 1.8186 6.6993 41 1 3.2742 0.2648 5.8482 42 1 1.0975 2.7896 5.4068 43 1 1.1095 1.0089 5.1830 44 1 -0.6429 2.1536 1.5670 45 1 -1.1364 3.4328 0.4318 46 1 -3.0511 2.8153 1.8288 47 1 -2.5186 4.4579 2.2605 48 1 -2.0957 3.0815 3.3068 49 1 1.2348 5.7733 1.5870 50 1 -0.1626 5.5167 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360574838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:06 Heat of formation + Delta-G solvation = -36.978715 kcal Electronic energy + Delta-G solvation = -32262.131812 eV Core-core repulsion = 28289.907655 eV Total energy + Delta-G solvation = -3972.224157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67090 -38.42579 -37.18932 -36.18304 -35.32869 -34.91734 -32.21107 -31.39499 -30.81617 -29.46943 -28.99356 -27.69080 -25.55767 -24.57601 -23.39414 -22.25047 -21.83861 -20.08917 -19.13262 -18.10719 -17.73458 -17.37232 -16.59925 -16.09911 -15.65482 -15.24539 -14.99515 -14.50093 -14.23573 -13.94991 -13.71269 -13.64508 -13.52167 -13.41112 -13.03776 -12.91062 -12.83164 -12.54388 -12.46397 -12.32467 -12.03900 -11.83271 -11.75424 -11.64021 -11.47874 -11.35398 -11.18088 -11.09677 -11.00634 -10.95284 -10.70773 -10.53570 -10.47668 -10.35027 -10.27999 -10.12527 -9.93446 -9.15393 -8.88323 -8.56944 -8.32538 -7.38426 -6.29281 -4.13337 2.55879 2.92390 3.07979 3.18305 3.23433 3.27128 3.59253 3.86364 4.11620 4.26461 4.63423 4.76939 4.84778 4.94473 4.99200 5.05426 5.20226 5.25977 5.43880 5.45622 5.53522 5.59307 5.63669 5.70708 5.72298 5.76912 5.82862 5.83424 5.90033 5.93523 5.99289 6.06290 6.09229 6.14781 6.18108 6.23180 6.29176 6.34086 6.42683 6.50698 6.66405 6.72103 6.85633 6.87585 7.31274 7.57250 7.65919 7.69642 8.31017 8.52063 8.69414 9.16482 9.35035 9.98545 10.70902 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.005537 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.024701 B = 5055.409302 C = 6342.707305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 N -0.439 5.439 4 C -0.301 4.301 5 H 0.083 0.917 6 C 0.042 3.958 7 N -0.881 5.881 8 Si 0.919 3.081 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.470 3.530 13 O -0.554 6.554 14 C -0.104 4.104 15 H 0.093 0.907 16 C -0.098 4.098 17 C -0.094 4.094 18 H 0.092 0.908 19 C -0.142 4.142 20 C -0.097 4.097 21 C -0.102 4.102 22 H 0.089 0.911 23 C 0.556 3.444 24 O -0.522 6.522 25 N -0.604 5.604 26 C 0.100 3.900 27 C -0.172 4.172 28 C 0.217 3.783 29 C 0.202 3.798 30 N -0.443 5.443 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.268 0.732 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.131 0.869 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 -2.875 6.783 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.159 5.159 4 C -0.429 4.429 5 H 0.101 0.899 6 C -0.162 4.162 7 N -0.520 5.520 8 Si 0.745 3.255 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.257 3.743 13 O -0.436 6.436 14 C -0.126 4.126 15 H 0.111 0.889 16 C -0.136 4.136 17 C -0.112 4.112 18 H 0.110 0.890 19 C -0.199 4.199 20 C -0.135 4.135 21 C -0.124 4.124 22 H 0.107 0.893 23 C 0.345 3.655 24 O -0.397 6.397 25 N -0.338 5.338 26 C -0.023 4.023 27 C -0.231 4.231 28 C 0.090 3.910 29 C -0.118 4.118 30 N -0.122 5.122 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.149 0.851 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.593 -1.071 7.891 11.003 hybrid contribution 0.371 -0.216 -1.278 1.348 sum -7.222 -1.286 6.612 9.876 Atomic orbital electron populations 1.22306 0.98661 1.00190 1.01129 1.21785 0.91313 0.86204 1.04210 1.43373 1.56624 1.11626 1.04269 1.19198 1.30168 1.01200 0.92372 0.89928 1.25523 0.94923 0.95733 0.99977 1.69616 1.35452 1.10914 1.35972 0.86138 0.78804 0.79423 0.81088 1.19789 1.21088 1.19991 1.20275 0.81307 0.88005 0.84716 1.90562 1.49838 1.16964 1.86216 1.22048 0.96234 0.99648 0.94694 0.88892 1.22030 0.96621 0.99919 0.95045 1.22010 0.94374 1.01038 0.93809 0.88964 1.21800 1.00407 0.99844 0.97836 1.22418 0.96143 1.01338 0.93627 1.22116 1.00157 0.92826 0.97348 0.89317 1.19968 0.78833 0.89387 0.77270 1.90595 1.36595 1.58724 1.53750 1.47578 1.32636 1.10013 1.43604 1.21772 0.86667 0.95539 0.98287 1.22262 0.97845 1.02163 1.00827 1.18733 0.99539 0.78856 0.93887 1.30241 0.93372 0.93951 0.94193 1.81105 1.11175 1.10241 1.09642 0.94262 0.92424 0.93232 0.86120 0.93674 0.92173 0.91792 0.91069 0.92838 0.93061 0.92967 0.91376 0.90948 0.89249 0.89971 0.91340 0.92712 0.92600 0.85134 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.10 37.16 0.38 -2.14 16 2 C 0.09 1.71 5.28 -4.04 -0.02 1.69 16 3 N -0.44 -9.71 2.51 -114.81 -0.29 -10.00 16 4 C -0.30 -7.47 8.79 -14.93 -0.13 -7.60 16 5 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 6 C 0.04 1.03 5.36 -17.46 -0.09 0.94 16 7 N -0.88 -22.19 10.96 55.50 0.61 -21.58 16 8 Si 0.92 19.77 29.55 -169.99 -5.02 14.74 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 12 C 0.47 9.92 5.30 -10.99 -0.06 9.86 16 13 O -0.55 -13.36 13.52 -12.84 -0.17 -13.54 16 14 C -0.10 -1.75 2.81 -90.65 -0.25 -2.01 16 15 H 0.09 1.42 5.37 -51.93 -0.28 1.15 16 16 C -0.10 -1.62 5.99 -25.61 -0.15 -1.77 16 17 C -0.09 -1.40 3.05 -88.96 -0.27 -1.67 16 18 H 0.09 1.65 6.86 -51.93 -0.36 1.30 16 19 C -0.14 -1.69 9.11 37.16 0.34 -1.35 16 20 C -0.10 -1.32 5.54 -24.74 -0.14 -1.46 16 21 C -0.10 -1.54 2.39 -90.12 -0.22 -1.75 16 22 H 0.09 1.12 6.32 -51.93 -0.33 0.79 16 23 C 0.56 9.71 3.94 -10.99 -0.04 9.67 16 24 O -0.52 -10.76 13.91 -12.83 -0.18 -10.94 16 25 N -0.60 -9.22 1.82 -177.03 -0.32 -9.54 16 26 C 0.10 1.26 5.66 -4.04 -0.02 1.24 16 27 C -0.17 -1.84 10.13 37.16 0.38 -1.46 16 28 C 0.22 3.07 5.89 -6.83 -0.04 3.03 16 29 C 0.20 3.04 14.66 -20.76 -0.30 2.73 16 30 N -0.44 -7.48 18.54 42.15 0.78 -6.69 16 31 H 0.04 0.53 5.68 -51.93 -0.30 0.24 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.12 2.68 5.45 -51.93 -0.28 2.40 16 35 H 0.04 0.81 6.09 -51.93 -0.32 0.49 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 38 H 0.07 1.40 7.64 -51.93 -0.40 1.00 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 43 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 44 H 0.09 1.16 3.41 -51.93 -0.18 0.99 16 45 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.63 7.11 -51.93 -0.37 0.27 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.13 2.08 7.50 -51.93 -0.39 1.69 16 50 H 0.12 1.32 7.94 -51.93 -0.41 0.91 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -30.63 390.41 -7.13 -37.76 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.76 Total: 5.96 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.66 Total: 7.95 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.78 Total: -47.82 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.35 Total: -24.48 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.63 -7.13 -37.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360574838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.783 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds