Wall clock time and date at job start Tue Mar 31 2020 19:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46884 * 2 1 4 4 C 1.37097 * 119.99687 * 266.70793 * 3 2 1 5 5 H 1.07994 * 120.00217 * 132.18964 * 4 3 2 6 6 C 1.38955 * 119.99995 * 312.19194 * 4 3 2 7 7 N 1.31416 * 119.99647 * 3.02647 * 6 4 3 8 8 Si 1.86797 * 120.00108 * 183.02872 * 6 4 3 9 9 H 1.48500 * 109.47117 * 59.99518 * 8 6 4 10 10 H 1.48497 * 109.47054 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47123 * 299.99814 * 8 6 4 12 12 C 1.34771 * 120.00202 * 86.70700 * 3 2 1 13 13 O 1.21299 * 119.99774 * 182.93955 * 12 3 2 14 14 C 1.50699 * 119.99940 * 2.93403 * 12 3 2 15 15 H 1.08994 * 110.06121 * 354.71627 * 14 12 3 16 16 C 1.53884 * 110.02717 * 116.13407 * 14 12 3 17 17 C 1.54266 * 106.59655 * 119.28527 * 16 14 12 18 18 H 1.08996 * 110.48286 * 264.92618 * 17 16 14 19 19 C 1.53003 * 110.48461 * 142.28381 * 17 16 14 20 20 C 1.54890 * 104.19746 * 23.60771 * 17 16 14 21 21 C 1.54265 * 110.03340 * 233.29433 * 14 12 3 22 22 H 1.09007 * 110.48350 * 98.29911 * 21 14 12 23 23 C 1.50696 * 110.48902 * 335.78895 * 21 14 12 24 24 O 1.21279 * 120.00045 * 273.36562 * 23 21 14 25 25 N 1.34780 * 119.99933 * 93.36640 * 23 21 14 26 26 C 1.46496 * 120.00169 * 5.21014 * 25 23 21 27 27 C 1.53006 * 109.46659 * 94.87077 * 26 25 23 28 28 C 1.46500 * 119.99694 * 185.21808 * 25 23 21 29 29 C 1.47201 * 109.46902 * 269.99420 * 28 25 23 30 30 N 8.13036 * 69.95387 * 23.65063 * 2 1 3 31 31 H 1.09003 * 109.47034 * 302.41872 * 1 2 3 32 32 H 1.08994 * 109.47412 * 62.42503 * 1 2 3 33 33 H 1.09007 * 109.46509 * 182.42149 * 1 2 3 34 34 H 1.08990 * 109.47373 * 239.99758 * 2 1 3 35 35 H 1.09002 * 109.46981 * 119.99211 * 2 1 3 36 36 H 0.96995 * 119.99237 * 179.97438 * 7 6 4 37 37 H 1.09004 * 110.02531 * 238.56904 * 16 14 12 38 38 H 1.08994 * 110.03259 * 359.95186 * 16 14 12 39 39 H 1.09005 * 109.46707 * 61.45099 * 19 17 16 40 40 H 1.08997 * 109.47118 * 181.44815 * 19 17 16 41 41 H 1.08998 * 109.47573 * 301.45723 * 19 17 16 42 42 H 1.09004 * 110.75029 * 203.74092 * 20 17 16 43 43 H 1.09006 * 110.75452 * 80.37499 * 20 17 16 44 44 H 1.08993 * 109.47280 * 334.87624 * 26 25 23 45 45 H 1.09001 * 109.47416 * 214.86668 * 26 25 23 46 46 H 1.08998 * 109.47146 * 175.18883 * 27 26 25 47 47 H 1.08993 * 109.47101 * 55.18871 * 27 26 25 48 48 H 1.08995 * 109.46979 * 295.18444 * 27 26 25 49 49 H 1.08998 * 109.47431 * 29.99887 * 28 25 23 50 50 H 1.09004 * 109.47364 * 150.00229 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3111 2.0048 -1.1854 5 1 1.9384 2.9998 -1.3786 6 6 3.0872 1.3564 -2.1383 7 7 3.4909 0.1235 -1.9287 8 14 3.5569 2.2373 -3.7171 9 1 4.3363 3.4582 -3.3897 10 1 4.3816 1.3355 -4.5606 11 1 2.3264 2.6189 -4.4559 12 6 2.1797 2.0390 1.1652 13 8 2.5329 3.1994 1.1627 14 6 1.9213 1.3328 2.4711 15 1 1.5252 0.3347 2.2844 16 6 3.2232 1.2392 3.2863 17 6 2.9726 1.9986 4.6055 18 1 3.3266 3.0265 4.5271 19 6 3.6553 1.2832 5.7731 20 6 1.4334 1.9667 4.7757 21 6 0.9252 2.1457 3.3235 22 1 -0.0830 1.7450 3.2179 23 6 0.9574 3.5998 2.9290 24 8 1.7646 4.3484 3.4378 25 7 0.0892 4.0682 2.0107 26 6 -0.9590 3.1931 1.4802 27 6 -2.2489 3.4020 2.2763 28 6 0.1940 5.4526 1.5429 29 6 -0.6249 6.3239 2.4014 30 7 -1.2569 6.9963 3.0640 31 1 -0.3633 0.5509 0.8675 32 1 -0.3634 0.4757 -0.9109 33 1 -0.3632 -1.0269 0.0434 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 4.0323 -0.3292 -2.5941 37 1 3.4587 0.1956 3.4950 38 1 4.0419 1.7039 2.7369 39 1 4.7317 1.2567 5.6035 40 1 3.4465 1.8186 6.6993 41 1 3.2742 0.2648 5.8482 42 1 1.0975 2.7896 5.4068 43 1 1.1095 1.0089 5.1830 44 1 -0.6429 2.1536 1.5670 45 1 -1.1364 3.4328 0.4318 46 1 -3.0511 2.8153 1.8288 47 1 -2.5186 4.4579 2.2605 48 1 -2.0957 3.0815 3.3068 49 1 1.2348 5.7733 1.5870 50 1 -0.1626 5.5167 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360574838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:05 Heat of formation + Delta-G solvation = -52.371490 kcal Electronic energy + Delta-G solvation = -32262.799293 eV Core-core repulsion = 28289.907655 eV Total energy + Delta-G solvation = -3972.891638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00961 -39.90357 -38.50682 -37.49446 -36.61935 -36.58514 -33.92577 -32.62126 -31.88934 -30.97051 -30.27206 -28.84687 -27.10729 -25.91941 -24.50881 -23.64955 -23.14174 -21.43570 -20.43325 -19.47797 -18.98865 -18.80976 -18.16710 -17.57863 -17.00706 -16.65617 -16.50782 -15.89385 -15.54214 -15.30547 -15.08228 -14.90687 -14.76956 -14.68366 -14.39532 -14.21532 -13.96187 -13.77836 -13.70774 -13.52482 -13.46914 -13.18643 -12.97919 -12.87388 -12.81866 -12.66833 -12.49770 -12.48452 -12.32880 -12.26166 -12.14253 -12.02653 -11.86123 -11.70309 -11.48706 -11.41395 -11.27403 -10.70737 -10.48702 -10.01413 -9.78858 -9.14306 -8.14403 -6.03854 1.34521 1.42933 1.47137 1.52918 1.68087 1.76232 2.25533 2.35834 2.42581 3.04215 3.09364 3.22047 3.57768 3.64047 3.73608 3.94757 4.07694 4.27534 4.31618 4.35433 4.37952 4.43914 4.48345 4.54523 4.59832 4.63199 4.64331 4.71866 4.82634 4.84323 4.85852 4.89366 4.97654 5.02895 5.06729 5.13120 5.14388 5.23447 5.33245 5.39351 5.41118 5.50510 5.56632 5.59377 5.68404 5.85165 6.42542 6.43259 6.48382 6.77013 7.33569 7.41507 7.64031 8.25972 8.82190 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.005537 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.024701 B = 5055.409302 C = 6342.707305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 N -0.451 5.451 4 C -0.315 4.315 5 H 0.066 0.934 6 C 0.004 3.996 7 N -0.898 5.898 8 Si 0.969 3.031 9 H -0.287 1.287 10 H -0.281 1.281 11 H -0.262 1.262 12 C 0.467 3.533 13 O -0.593 6.593 14 C -0.097 4.097 15 H 0.117 0.883 16 C -0.098 4.098 17 C -0.092 4.092 18 H 0.050 0.950 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.101 4.101 22 H 0.122 0.878 23 C 0.545 3.455 24 O -0.565 6.565 25 N -0.606 5.606 26 C 0.096 3.904 27 C -0.162 4.162 28 C 0.216 3.784 29 C 0.223 3.777 30 N -0.472 5.472 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.267 0.733 37 H 0.090 0.910 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.042 0.958 48 H 0.056 0.944 49 H 0.109 0.891 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -5.005 7.602 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.037 4.037 3 N -0.170 5.170 4 C -0.444 4.444 5 H 0.084 0.916 6 C -0.197 4.197 7 N -0.537 5.537 8 Si 0.795 3.205 9 H -0.213 1.213 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.255 3.745 13 O -0.477 6.477 14 C -0.119 4.119 15 H 0.135 0.865 16 C -0.136 4.136 17 C -0.111 4.111 18 H 0.069 0.931 19 C -0.193 4.193 20 C -0.127 4.127 21 C -0.123 4.123 22 H 0.140 0.860 23 C 0.336 3.664 24 O -0.443 6.443 25 N -0.339 5.339 26 C -0.026 4.026 27 C -0.221 4.221 28 C 0.089 3.911 29 C -0.096 4.096 30 N -0.151 5.151 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.127 0.873 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.732 -3.232 8.692 13.443 hybrid contribution 1.086 0.485 -1.558 1.960 sum -8.646 -2.747 7.134 11.541 Atomic orbital electron populations 1.22178 0.95264 1.02274 1.01402 1.21823 0.94097 0.84314 1.03434 1.43571 1.57014 1.12599 1.03818 1.19200 1.30548 1.00856 0.93805 0.91624 1.26090 0.95010 0.96317 1.02304 1.69737 1.35871 1.11511 1.36614 0.85358 0.78691 0.77850 0.78603 1.21317 1.20640 1.18652 1.20920 0.80101 0.87588 0.85846 1.90550 1.51236 1.18872 1.87029 1.22036 0.97091 1.00411 0.92362 0.86465 1.22051 0.95023 1.01180 0.95329 1.21908 0.96090 0.98865 0.94216 0.93111 1.21756 0.99931 1.00844 0.96724 1.22456 0.94492 1.03148 0.92617 1.22230 1.01394 0.90870 0.97813 0.85977 1.20544 0.78412 0.90361 0.77122 1.90578 1.38321 1.59997 1.55393 1.47741 1.32850 1.10453 1.42897 1.21964 0.86691 0.94929 0.98970 1.22181 0.97281 1.01877 1.00726 1.18816 0.98338 0.78657 0.95242 1.30255 0.92623 0.93271 0.93442 1.81116 1.12345 1.11146 1.10538 0.92201 0.93792 0.90341 0.89061 0.92245 0.92306 0.89154 0.95549 0.93284 0.92074 0.90564 0.91912 0.87055 0.89207 0.89388 0.88756 0.93893 0.92464 0.87338 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 10.10 71.98 0.73 -3.48 16 2 C 0.09 3.21 5.28 86.38 0.46 3.66 16 3 N -0.45 -19.84 2.51 -635.53 -1.59 -21.44 16 4 C -0.32 -15.89 8.79 84.04 0.74 -15.15 16 5 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 6 C 0.00 0.20 5.36 84.93 0.45 0.65 16 7 N -0.90 -45.61 10.96 21.67 0.24 -45.37 16 8 Si 0.97 41.01 29.55 68.60 2.03 43.04 16 9 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 12 C 0.47 19.72 5.30 87.66 0.46 20.18 16 13 O -0.59 -29.56 13.52 14.49 0.20 -29.36 16 14 C -0.10 -3.10 2.81 -10.81 -0.03 -3.13 16 15 H 0.12 3.15 5.37 -2.39 -0.01 3.14 16 16 C -0.10 -3.15 5.99 31.32 0.19 -2.96 16 17 C -0.09 -2.67 3.05 -9.72 -0.03 -2.70 16 18 H 0.05 1.90 6.86 -2.39 -0.02 1.88 16 19 C -0.14 -2.93 9.11 71.98 0.66 -2.27 16 20 C -0.09 -2.18 5.54 31.88 0.18 -2.00 16 21 C -0.10 -2.81 2.39 -10.47 -0.03 -2.84 16 22 H 0.12 2.54 6.32 -2.38 -0.02 2.53 16 23 C 0.54 18.90 3.94 87.66 0.34 19.24 16 24 O -0.57 -24.13 13.91 14.55 0.20 -23.93 16 25 N -0.61 -18.12 1.82 -832.37 -1.52 -19.63 16 26 C 0.10 2.21 5.66 86.38 0.49 2.70 16 27 C -0.16 -2.97 10.13 71.98 0.73 -2.24 16 28 C 0.22 6.19 5.89 84.57 0.50 6.69 16 29 C 0.22 6.71 14.66 89.44 1.31 8.02 16 30 N -0.47 -15.90 18.54 20.01 0.37 -15.53 16 31 H 0.06 1.39 5.68 -2.39 -0.01 1.37 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.09 4.01 5.45 -2.39 -0.01 4.00 16 35 H 0.06 1.99 6.09 -2.39 -0.01 1.97 16 36 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 37 H 0.09 2.39 7.84 -2.39 -0.02 2.38 16 38 H 0.03 1.06 7.64 -2.39 -0.02 1.04 16 39 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 43 H 0.11 1.88 8.06 -2.38 -0.02 1.86 16 44 H 0.09 2.04 3.41 -2.39 -0.01 2.04 16 45 H 0.09 1.92 7.96 -2.39 -0.02 1.90 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.04 0.90 7.11 -2.39 -0.02 0.88 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.11 3.67 7.50 -2.39 -0.02 3.65 16 50 H 0.15 3.25 7.94 -2.39 -0.02 3.23 16 Total: -1.00 -70.53 390.41 8.02 -62.51 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.95 Total: 25.35 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.15 Total: 24.37 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -2.50 Total: -101.97 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: 0.40 Total: -53.29 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -70.53 8.02 -62.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360574838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds