Wall clock time and date at job start Tue Mar 31 2020 18:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99937 * 2 1 4 4 C 1.53004 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47069 * 185.00292 * 4 3 2 6 6 C 1.53006 * 109.47141 * 305.00296 * 4 3 2 7 7 N 1.46492 * 109.47114 * 65.00080 * 4 3 2 8 8 C 1.39901 * 120.00005 * 154.99771 * 7 4 3 9 9 C 1.38716 * 120.09878 * 0.02562 * 8 7 4 10 10 C 1.38215 * 119.99178 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.19875 * 359.97438 * 10 9 8 12 12 C 1.38231 * 120.19541 * 0.02562 * 11 10 9 13 13 C 1.38669 * 120.00437 * 359.74552 * 12 11 10 14 14 N 1.40149 * 120.09599 * 180.25462 * 13 12 11 15 15 C 1.34781 * 120.00122 * 325.32007 * 14 13 12 16 16 O 1.21296 * 119.99850 * 4.48469 * 15 14 13 17 17 C 1.50702 * 119.99987 * 184.47952 * 15 14 13 18 18 H 1.08999 * 109.47321 * 320.00098 * 17 15 14 19 19 N 1.46898 * 109.47213 * 200.00109 * 17 15 14 20 20 C 1.52997 * 109.46738 * 80.00288 * 17 15 14 21 21 C 1.53005 * 109.47225 * 185.00235 * 20 17 15 22 22 C 1.50694 * 109.47416 * 180.02562 * 21 20 17 23 23 H 1.08001 * 120.00084 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99954 * 179.97438 * 22 21 20 25 25 N 1.31508 * 120.00243 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99766 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47268 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46902 * 120.00227 * 26 24 22 29 29 H 1.48497 * 109.46873 * 239.99684 * 26 24 22 30 30 H 1.08998 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47097 * 299.99735 * 1 2 3 32 32 H 1.08994 * 109.47392 * 59.99563 * 1 2 3 33 33 H 1.08993 * 109.47359 * 300.00349 * 3 2 1 34 34 H 1.09004 * 109.46930 * 60.00322 * 3 2 1 35 35 H 1.09009 * 109.46855 * 299.99984 * 6 4 3 36 36 H 1.08991 * 109.46835 * 59.99591 * 6 4 3 37 37 H 1.08999 * 109.46882 * 180.02562 * 6 4 3 38 38 H 0.97001 * 120.00260 * 335.00474 * 7 4 3 39 39 H 1.07999 * 119.99967 * 359.94685 * 9 8 7 40 40 H 1.08004 * 119.90171 * 179.97438 * 10 9 8 41 41 H 1.07998 * 119.90058 * 179.97438 * 11 10 9 42 42 H 1.07999 * 119.99526 * 180.02562 * 12 11 10 43 43 H 0.96996 * 120.00046 * 145.31917 * 14 13 12 44 44 H 1.00897 * 110.99652 * 300.00260 * 19 17 15 45 45 H 1.00903 * 110.99813 * 63.95333 * 19 17 15 46 46 H 1.09007 * 109.47481 * 304.99500 * 20 17 15 47 47 H 1.08997 * 109.47812 * 65.00104 * 20 17 15 48 48 H 1.09007 * 109.46291 * 299.99993 * 21 20 17 49 49 H 1.08997 * 109.46832 * 59.99270 * 21 20 17 50 50 H 0.97000 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 0.0890 6 6 3.9790 0.3192 1.1806 7 7 3.9756 0.5644 -1.2527 8 6 5.2667 0.8034 -1.7356 9 6 6.1320 1.6268 -1.0302 10 6 7.4072 1.8609 -1.5090 11 6 7.8249 1.2760 -2.6904 12 6 6.9693 0.4541 -3.3998 13 6 5.6897 0.2098 -2.9246 14 7 4.8224 -0.6275 -3.6395 15 6 4.8588 -0.6428 -4.9867 16 8 5.6958 0.0059 -5.5782 17 6 3.8595 -1.4659 -5.7581 18 1 3.7047 -2.4184 -5.2512 19 7 4.3690 -1.7101 -7.1141 20 6 2.5317 -0.7103 -5.8406 21 6 1.4816 -1.5963 -6.5139 22 6 0.1740 -0.8518 -6.5957 23 1 0.0991 0.1526 -6.2060 24 6 -0.9269 -1.4531 -7.1681 25 7 -0.8357 -2.6760 -7.6431 26 14 -2.5481 -0.5304 -7.2689 27 1 -2.3882 0.8184 -6.6686 28 1 -2.9524 -0.3940 -8.6912 29 1 -3.5923 -1.2822 -6.5274 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 -0.8899 34 1 1.6886 1.8463 0.8901 35 1 3.6515 0.7807 2.1123 36 1 3.5359 -0.6725 1.0910 37 1 5.0656 0.2336 1.1804 38 1 3.3719 -0.0118 -1.7470 39 1 5.8090 2.0852 -0.1072 40 1 8.0795 2.5026 -0.9588 41 1 8.8222 1.4626 -3.0603 42 1 7.2990 -0.0013 -4.3219 43 1 4.1961 -1.1959 -3.1647 44 1 4.5207 -0.8419 -7.6051 45 1 5.2122 -2.2637 -7.0893 46 1 2.1980 -0.4512 -4.8357 47 1 2.6673 0.2001 -6.4244 48 1 1.8154 -1.8554 -7.5188 49 1 1.3461 -2.5067 -5.9301 50 1 -1.6103 -3.0991 -8.0454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424177116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:44 Heat of formation + Delta-G solvation = -60.505460 kcal Electronic energy + Delta-G solvation = -29474.009087 eV Core-core repulsion = 25500.764734 eV Total energy + Delta-G solvation = -3973.244353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67031 -39.17975 -38.24692 -35.97641 -35.28893 -34.69359 -32.83012 -31.80809 -30.16190 -29.90684 -28.21165 -27.57015 -26.36281 -25.83847 -24.11037 -23.04475 -21.84151 -20.82261 -20.44039 -19.83247 -18.32137 -17.16608 -17.00188 -16.54397 -16.35011 -16.12225 -15.71184 -15.52961 -15.11172 -14.78624 -14.54292 -14.37637 -14.33690 -13.97825 -13.70804 -13.62513 -13.52008 -13.02820 -12.67689 -12.39484 -12.34313 -12.10902 -12.04604 -11.76220 -11.58296 -11.51061 -11.31133 -11.22825 -10.94384 -10.68431 -10.56898 -10.34787 -10.11715 -9.99761 -9.93393 -9.82043 -9.40236 -9.01657 -8.39834 -8.36923 -8.24630 -7.27310 -5.96432 -3.98510 1.36699 1.59158 2.71647 3.05570 3.30766 3.32199 3.38732 3.42021 3.52863 3.91216 4.47000 4.47519 4.74539 4.79508 4.84015 4.99080 5.01494 5.04654 5.09719 5.17371 5.21164 5.29223 5.38349 5.39166 5.47933 5.48501 5.52386 5.57533 5.60210 5.66544 5.78024 5.89909 6.06818 6.14279 6.29946 6.38676 6.55982 6.61966 6.67243 6.81864 6.90923 7.04821 7.23427 7.35033 7.51553 7.61068 7.73447 7.76524 7.93515 8.10328 8.24587 8.45754 9.09513 9.64643 11.14494 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.003671 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.649207 B = 7625.503127 C =10330.390780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.050 3.950 4 C 0.156 3.844 5 H 0.089 0.911 6 C -0.165 4.165 7 N -0.740 5.740 8 C 0.198 3.802 9 C -0.189 4.189 10 C -0.090 4.090 11 C -0.164 4.164 12 C -0.076 4.076 13 C 0.074 3.926 14 N -0.669 5.669 15 C 0.483 3.517 16 O -0.536 6.536 17 C 0.081 3.919 18 H 0.099 0.901 19 N -0.806 5.806 20 C -0.094 4.094 21 C 0.031 3.969 22 C -0.521 4.521 23 H 0.052 0.948 24 C 0.058 3.942 25 N -0.892 5.892 26 Si 0.887 3.113 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.285 1.285 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.403 0.597 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.406 0.594 44 H 0.349 0.651 45 H 0.335 0.665 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.035 0.965 49 H 0.013 0.987 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.034 6.756 19.083 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.051 3.949 5 H 0.107 0.893 6 C -0.223 4.223 7 N -0.371 5.371 8 C 0.094 3.906 9 C -0.212 4.212 10 C -0.109 4.109 11 C -0.185 4.185 12 C -0.097 4.097 13 C -0.024 4.024 14 N -0.315 5.315 15 C 0.270 3.730 16 O -0.412 6.412 17 C -0.035 4.035 18 H 0.117 0.883 19 N -0.333 5.333 20 C -0.132 4.132 21 C -0.006 4.006 22 C -0.560 4.560 23 H 0.070 0.930 24 C -0.143 4.143 25 N -0.531 5.531 26 Si 0.716 3.284 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.211 1.211 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.238 0.762 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.154 0.846 43 H 0.242 0.758 44 H 0.163 0.837 45 H 0.147 0.853 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.032 0.968 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.842 6.607 18.540 22.970 hybrid contribution -0.930 0.814 0.382 1.293 sum 10.912 7.421 18.921 23.069 Atomic orbital electron populations 1.22790 0.80390 1.03290 1.00120 1.87870 1.20159 1.27022 1.95428 1.22845 0.92947 0.85765 1.01184 1.20941 0.92033 0.97227 0.84729 0.89317 1.22194 1.01631 1.01529 0.96976 1.44607 1.12130 1.55143 1.25262 1.17654 0.85682 0.94418 0.92833 1.20435 0.94627 1.04066 1.02051 1.20836 0.95267 0.98893 0.95897 1.20801 0.99976 1.01252 0.96435 1.21072 0.90763 0.98034 0.99790 1.17351 0.91301 0.99866 0.93834 1.43597 1.38668 1.42386 1.06875 1.22960 0.85883 0.82303 0.81847 1.90634 1.38190 1.43486 1.68854 1.21855 0.94166 0.98472 0.89055 0.88292 1.58994 1.36785 1.24040 1.13514 1.21657 0.91612 0.99162 1.00811 1.19019 0.90954 0.93738 0.96850 1.21293 0.95432 1.00620 1.38616 0.93017 1.24982 0.98792 0.94905 0.95596 1.69977 1.30042 1.13000 1.40066 0.86614 0.84128 0.79938 0.77755 1.19921 1.21017 1.21105 0.89241 0.94248 0.93496 0.92371 0.92027 0.92166 0.91236 0.92276 0.76169 0.85999 0.86409 0.86389 0.84616 0.75798 0.83725 0.85345 0.92958 0.92803 0.94620 0.96838 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.03 9.55 -35.23 -0.34 -4.36 16 3 C 0.05 0.43 5.68 37.16 0.21 0.64 16 4 C 0.16 1.35 2.67 -67.93 -0.18 1.17 16 5 H 0.09 0.68 6.49 -51.93 -0.34 0.34 16 6 C -0.16 -1.33 9.23 37.16 0.34 -0.99 16 7 N -0.74 -7.93 5.21 -52.01 -0.27 -8.20 16 8 C 0.20 2.40 6.66 -83.54 -0.56 1.85 16 9 C -0.19 -2.03 8.85 -39.41 -0.35 -2.38 16 10 C -0.09 -0.95 10.04 -39.57 -0.40 -1.34 16 11 C -0.16 -1.95 10.04 -39.57 -0.40 -2.35 16 12 C -0.08 -1.07 8.70 -39.42 -0.34 -1.41 16 13 C 0.07 1.02 6.33 -83.44 -0.53 0.49 16 14 N -0.67 -9.05 5.02 -9.71 -0.05 -9.10 16 15 C 0.48 7.64 6.91 -10.98 -0.08 7.56 16 16 O -0.54 -9.67 13.67 5.54 0.08 -9.60 16 17 C 0.08 1.33 3.15 -68.87 -0.22 1.11 16 18 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 19 N -0.81 -13.35 8.44 -5.66 -0.05 -13.40 16 20 C -0.09 -1.88 4.78 -26.73 -0.13 -2.01 16 21 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 22 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 23 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 26 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 37 H 0.06 0.49 7.72 -51.93 -0.40 0.09 16 38 H 0.40 4.59 7.00 -40.82 -0.29 4.30 16 39 H 0.12 1.06 6.12 -52.49 -0.32 0.74 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.14 2.08 6.20 -52.49 -0.33 1.75 16 43 H 0.41 4.74 7.72 -40.82 -0.32 4.42 16 44 H 0.35 5.88 8.58 -39.29 -0.34 5.55 16 45 H 0.33 4.79 9.06 -39.29 -0.36 4.43 16 46 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.04 0.98 7.75 -51.92 -0.40 0.58 16 49 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -32.56 407.31 -8.92 -41.48 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -8.09 Total: 15.38 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.05 Total: -8.92 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.37 Total: -56.61 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.26 Total: -13.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.56 -8.92 -41.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424177116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.027 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds