Wall clock time and date at job start Tue Mar 31 2020 18:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99937 * 2 1 4 4 C 1.53004 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47069 * 185.00292 * 4 3 2 6 6 C 1.53006 * 109.47141 * 305.00296 * 4 3 2 7 7 N 1.46492 * 109.47114 * 65.00080 * 4 3 2 8 8 C 1.39901 * 120.00005 * 154.99771 * 7 4 3 9 9 C 1.38716 * 120.09878 * 0.02562 * 8 7 4 10 10 C 1.38215 * 119.99178 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.19875 * 359.97438 * 10 9 8 12 12 C 1.38231 * 120.19541 * 0.02562 * 11 10 9 13 13 C 1.38669 * 120.00437 * 359.74552 * 12 11 10 14 14 N 1.40149 * 120.09599 * 180.25462 * 13 12 11 15 15 C 1.34781 * 120.00122 * 325.32007 * 14 13 12 16 16 O 1.21296 * 119.99850 * 4.48469 * 15 14 13 17 17 C 1.50702 * 119.99987 * 184.47952 * 15 14 13 18 18 H 1.08999 * 109.47321 * 320.00098 * 17 15 14 19 19 N 1.46898 * 109.47213 * 200.00109 * 17 15 14 20 20 C 1.52997 * 109.46738 * 80.00288 * 17 15 14 21 21 C 1.53005 * 109.47225 * 185.00235 * 20 17 15 22 22 C 1.50694 * 109.47416 * 180.02562 * 21 20 17 23 23 H 1.08001 * 120.00084 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99954 * 179.97438 * 22 21 20 25 25 N 1.31508 * 120.00243 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99766 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47268 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46902 * 120.00227 * 26 24 22 29 29 H 1.48497 * 109.46873 * 239.99684 * 26 24 22 30 30 H 1.08998 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47097 * 299.99735 * 1 2 3 32 32 H 1.08994 * 109.47392 * 59.99563 * 1 2 3 33 33 H 1.08993 * 109.47359 * 300.00349 * 3 2 1 34 34 H 1.09004 * 109.46930 * 60.00322 * 3 2 1 35 35 H 1.09009 * 109.46855 * 299.99984 * 6 4 3 36 36 H 1.08991 * 109.46835 * 59.99591 * 6 4 3 37 37 H 1.08999 * 109.46882 * 180.02562 * 6 4 3 38 38 H 0.97001 * 120.00260 * 335.00474 * 7 4 3 39 39 H 1.07999 * 119.99967 * 359.94685 * 9 8 7 40 40 H 1.08004 * 119.90171 * 179.97438 * 10 9 8 41 41 H 1.07998 * 119.90058 * 179.97438 * 11 10 9 42 42 H 1.07999 * 119.99526 * 180.02562 * 12 11 10 43 43 H 0.96996 * 120.00046 * 145.31917 * 14 13 12 44 44 H 1.00897 * 110.99652 * 300.00260 * 19 17 15 45 45 H 1.00903 * 110.99813 * 63.95333 * 19 17 15 46 46 H 1.09007 * 109.47481 * 304.99500 * 20 17 15 47 47 H 1.08997 * 109.47812 * 65.00104 * 20 17 15 48 48 H 1.09007 * 109.46291 * 299.99993 * 21 20 17 49 49 H 1.08997 * 109.46832 * 59.99270 * 21 20 17 50 50 H 0.97000 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 0.0890 6 6 3.9790 0.3192 1.1806 7 7 3.9756 0.5644 -1.2527 8 6 5.2667 0.8034 -1.7356 9 6 6.1320 1.6268 -1.0302 10 6 7.4072 1.8609 -1.5090 11 6 7.8249 1.2760 -2.6904 12 6 6.9693 0.4541 -3.3998 13 6 5.6897 0.2098 -2.9246 14 7 4.8224 -0.6275 -3.6395 15 6 4.8588 -0.6428 -4.9867 16 8 5.6958 0.0059 -5.5782 17 6 3.8595 -1.4659 -5.7581 18 1 3.7047 -2.4184 -5.2512 19 7 4.3690 -1.7101 -7.1141 20 6 2.5317 -0.7103 -5.8406 21 6 1.4816 -1.5963 -6.5139 22 6 0.1740 -0.8518 -6.5957 23 1 0.0991 0.1526 -6.2060 24 6 -0.9269 -1.4531 -7.1681 25 7 -0.8357 -2.6760 -7.6431 26 14 -2.5481 -0.5304 -7.2689 27 1 -2.3882 0.8184 -6.6686 28 1 -2.9524 -0.3940 -8.6912 29 1 -3.5923 -1.2822 -6.5274 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 -0.8899 34 1 1.6886 1.8463 0.8901 35 1 3.6515 0.7807 2.1123 36 1 3.5359 -0.6725 1.0910 37 1 5.0656 0.2336 1.1804 38 1 3.3719 -0.0118 -1.7470 39 1 5.8090 2.0852 -0.1072 40 1 8.0795 2.5026 -0.9588 41 1 8.8222 1.4626 -3.0603 42 1 7.2990 -0.0013 -4.3219 43 1 4.1961 -1.1959 -3.1647 44 1 4.5207 -0.8419 -7.6051 45 1 5.2122 -2.2637 -7.0893 46 1 2.1980 -0.4512 -4.8357 47 1 2.6673 0.2001 -6.4244 48 1 1.8154 -1.8554 -7.5188 49 1 1.3461 -2.5067 -5.9301 50 1 -1.6103 -3.0991 -8.0454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424177116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:43 Heat of formation + Delta-G solvation = -83.524010 kcal Electronic energy + Delta-G solvation = -29475.007247 eV Core-core repulsion = 25500.764734 eV Total energy + Delta-G solvation = -3974.242512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77674 -40.17279 -39.05844 -36.96846 -36.64242 -35.82544 -34.83393 -32.60597 -31.95522 -30.91865 -29.12333 -28.25452 -28.00514 -26.53583 -25.70776 -24.10373 -22.95665 -22.16713 -21.47930 -21.11294 -19.34585 -18.54030 -18.13601 -17.84605 -17.30772 -17.08895 -16.99111 -16.56607 -16.42448 -16.14305 -15.75952 -15.47377 -15.21205 -15.14988 -14.90116 -14.61666 -14.51960 -14.28999 -13.92410 -13.76112 -13.46277 -13.41357 -13.07239 -12.84121 -12.77573 -12.65483 -12.51212 -12.30711 -12.28753 -12.09267 -11.90592 -11.77776 -11.60264 -11.33767 -11.18244 -10.99658 -10.94176 -10.64258 -10.50361 -9.68284 -9.33620 -8.17170 -8.14627 -6.24760 0.40650 0.67750 1.39658 1.41228 1.47834 1.53421 2.01254 2.42376 2.44415 2.84135 2.99508 3.18544 3.50030 3.73801 3.80212 3.97019 4.05591 4.10305 4.23851 4.26218 4.36333 4.39133 4.48157 4.52772 4.56432 4.59435 4.65952 4.70680 4.73677 4.84405 4.89719 4.90072 4.97353 5.04572 5.20540 5.25116 5.37273 5.44911 5.55976 5.61381 5.75126 5.82823 5.96734 5.97240 6.04604 6.17105 6.29305 6.32128 6.45260 6.49262 6.69967 6.93471 7.05671 7.43267 8.96779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.003671 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.649207 B = 7625.503127 C =10330.390780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.048 3.952 4 C 0.154 3.846 5 H 0.106 0.894 6 C -0.157 4.157 7 N -0.741 5.741 8 C 0.197 3.803 9 C -0.188 4.188 10 C -0.081 4.081 11 C -0.174 4.174 12 C -0.095 4.095 13 C 0.045 3.955 14 N -0.656 5.656 15 C 0.488 3.512 16 O -0.559 6.559 17 C 0.090 3.910 18 H 0.111 0.889 19 N -0.816 5.816 20 C -0.079 4.079 21 C 0.041 3.959 22 C -0.541 4.541 23 H 0.054 0.946 24 C 0.003 3.997 25 N -0.929 5.929 26 Si 0.958 3.042 27 H -0.265 1.265 28 H -0.281 1.281 29 H -0.276 1.276 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.397 0.603 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.133 0.867 42 H 0.115 0.885 43 H 0.414 0.586 44 H 0.346 0.654 45 H 0.348 0.652 46 H 0.063 0.937 47 H 0.041 0.959 48 H 0.006 0.994 49 H -0.005 1.005 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 8.539 21.528 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.029 4.029 4 C 0.049 3.951 5 H 0.123 0.877 6 C -0.216 4.216 7 N -0.371 5.371 8 C 0.092 3.908 9 C -0.211 4.211 10 C -0.100 4.100 11 C -0.194 4.194 12 C -0.116 4.116 13 C -0.053 4.053 14 N -0.302 5.302 15 C 0.275 3.725 16 O -0.438 6.438 17 C -0.026 4.026 18 H 0.129 0.871 19 N -0.345 5.345 20 C -0.117 4.117 21 C 0.003 3.997 22 C -0.580 4.580 23 H 0.072 0.928 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.783 3.217 27 H -0.189 1.189 28 H -0.207 1.207 29 H -0.202 1.202 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.231 0.769 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.133 0.867 43 H 0.251 0.749 44 H 0.160 0.840 45 H 0.161 0.839 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.013 0.987 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.821 8.391 21.033 25.545 hybrid contribution -0.885 0.263 -0.314 0.975 sum 10.937 8.655 20.719 24.976 Atomic orbital electron populations 1.22854 0.79911 1.03511 1.00596 1.87847 1.20832 1.28170 1.95555 1.22942 0.92868 0.85215 1.01833 1.21144 0.92140 0.97919 0.83899 0.87668 1.22117 1.01364 1.00569 0.97507 1.44754 1.11558 1.54931 1.25849 1.17787 0.86417 0.94320 0.92305 1.20784 0.94432 1.03295 1.02614 1.21216 0.95594 0.98100 0.95128 1.21036 1.00423 1.00972 0.96977 1.21061 0.91630 0.99210 0.99677 1.17527 0.91491 1.01256 0.94991 1.43390 1.38506 1.42176 1.06097 1.22584 0.85467 0.81901 0.82540 1.90628 1.39136 1.44475 1.69529 1.21626 0.92809 0.98664 0.89545 0.87080 1.58977 1.37719 1.24177 1.13609 1.21366 0.92072 0.97818 1.00484 1.18818 0.91739 0.93709 0.95396 1.21713 0.96754 1.00922 1.38564 0.92813 1.25873 1.02709 0.95753 0.95120 1.70105 1.31292 1.14625 1.40868 0.85509 0.79415 0.78942 0.77823 1.18884 1.20726 1.20166 0.89260 0.92322 0.94430 0.93376 0.89654 0.90308 0.93030 0.92361 0.76861 0.83475 0.83215 0.84921 0.86698 0.74879 0.84018 0.83885 0.91792 0.94016 0.97508 0.98658 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -7.97 9.55 -148.98 -1.42 -9.39 16 3 C 0.05 0.74 5.68 71.98 0.41 1.15 16 4 C 0.15 2.29 2.67 45.00 0.12 2.41 16 5 H 0.11 1.24 6.49 -2.39 -0.02 1.23 16 6 C -0.16 -2.16 9.23 71.98 0.66 -1.49 16 7 N -0.74 -14.85 5.21 -318.46 -1.66 -16.51 16 8 C 0.20 4.48 6.66 38.26 0.25 4.73 16 9 C -0.19 -3.51 8.85 22.38 0.20 -3.32 16 10 C -0.08 -1.48 10.04 22.28 0.22 -1.26 16 11 C -0.17 -3.89 10.04 22.28 0.22 -3.67 16 12 C -0.10 -2.67 8.70 22.37 0.19 -2.48 16 13 C 0.04 1.22 6.33 38.21 0.24 1.46 16 14 N -0.66 -17.80 5.02 -303.02 -1.52 -19.32 16 15 C 0.49 15.65 6.91 87.66 0.61 16.26 16 16 O -0.56 -20.67 13.67 -3.08 -0.04 -20.71 16 17 C 0.09 3.00 3.15 44.17 0.14 3.14 16 18 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 19 N -0.82 -27.72 8.44 -171.81 -1.45 -29.17 16 20 C -0.08 -3.21 4.78 30.60 0.15 -3.06 16 21 C 0.04 2.10 4.86 29.85 0.15 2.25 16 22 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 23 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 24 C 0.00 0.19 5.46 84.66 0.46 0.65 16 25 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 26 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.05 0.91 7.56 -2.39 -0.02 0.89 16 37 H 0.06 0.81 7.72 -2.39 -0.02 0.80 16 38 H 0.40 8.79 7.00 -92.71 -0.65 8.14 16 39 H 0.15 1.96 6.12 -2.91 -0.02 1.94 16 40 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.12 3.66 6.20 -2.91 -0.02 3.64 16 43 H 0.41 9.64 7.72 -92.71 -0.72 8.92 16 44 H 0.35 12.05 8.58 -89.70 -0.77 11.28 16 45 H 0.35 10.12 9.06 -89.69 -0.81 9.31 16 46 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 47 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.01 0.37 7.75 -2.38 -0.02 0.35 16 49 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 50 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -70.92 407.31 -0.24 -71.16 By element: Atomic # 1 Polarization: 47.72 SS G_CDS: -1.97 Total: 45.75 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.51 Total: -11.91 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -4.35 Total: -121.08 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.47 Total: -30.10 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.92 -0.24 -71.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424177116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.362 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds