Wall clock time and date at job start Tue Mar 31 2020 18:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99892 * 2 1 4 4 C 1.53004 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46828 * 174.99839 * 4 3 2 6 6 C 1.52994 * 109.47067 * 55.00157 * 4 3 2 7 7 N 1.46504 * 109.47297 * 294.99681 * 4 3 2 8 8 C 1.39890 * 120.00010 * 205.00434 * 7 4 3 9 9 C 1.38718 * 120.09923 * 0.02562 * 8 7 4 10 10 C 1.38218 * 119.99229 * 179.97438 * 9 8 7 11 11 C 1.38291 * 120.19806 * 0.02562 * 10 9 8 12 12 C 1.38230 * 120.19355 * 359.68134 * 11 10 9 13 13 C 1.38672 * 120.00453 * 0.59334 * 12 11 10 14 14 N 1.40152 * 120.09839 * 179.70154 * 13 12 11 15 15 C 1.34781 * 119.99729 * 34.68566 * 14 13 12 16 16 O 1.21290 * 120.00101 * 355.51331 * 15 14 13 17 17 C 1.50700 * 119.99783 * 175.51647 * 15 14 13 18 18 H 1.09008 * 109.47145 * 39.99859 * 17 15 14 19 19 N 1.46894 * 109.47237 * 159.99734 * 17 15 14 20 20 C 1.52997 * 109.47315 * 279.99887 * 17 15 14 21 21 C 1.53006 * 109.47257 * 174.99794 * 20 17 15 22 22 C 1.50700 * 109.46986 * 180.02562 * 21 20 17 23 23 H 1.08002 * 120.00131 * 0.02562 * 22 21 20 24 24 C 1.37872 * 119.99892 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99968 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47370 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47224 * 119.99948 * 26 24 22 29 29 H 1.48498 * 109.47350 * 239.99667 * 26 24 22 30 30 H 1.09003 * 109.47349 * 60.00077 * 1 2 3 31 31 H 1.08998 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47253 * 299.99899 * 1 2 3 33 33 H 1.09002 * 109.47217 * 59.99977 * 3 2 1 34 34 H 1.08998 * 109.47128 * 299.99772 * 3 2 1 35 35 H 1.08995 * 109.47193 * 299.99321 * 6 4 3 36 36 H 1.08999 * 109.47376 * 60.00380 * 6 4 3 37 37 H 1.09010 * 109.46976 * 179.97438 * 6 4 3 38 38 H 0.96996 * 119.99726 * 25.00133 * 7 4 3 39 39 H 1.07994 * 120.00538 * 0.02562 * 9 8 7 40 40 H 1.08006 * 119.89936 * 180.02562 * 10 9 8 41 41 H 1.07995 * 119.90287 * 179.97438 * 11 10 9 42 42 H 1.08004 * 120.00028 * 180.32360 * 12 11 10 43 43 H 0.97002 * 120.00024 * 214.68535 * 14 13 12 44 44 H 1.00903 * 110.99874 * 60.00191 * 19 17 15 45 45 H 1.00899 * 111.00664 * 183.95365 * 19 17 15 46 46 H 1.09000 * 109.47388 * 295.00048 * 20 17 15 47 47 H 1.09008 * 109.47009 * 55.00219 * 20 17 15 48 48 H 1.09000 * 109.47129 * 300.00412 * 21 20 17 49 49 H 1.08996 * 109.46724 * 59.99940 * 21 20 17 50 50 H 0.97004 * 120.00121 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 -0.0890 6 6 3.9789 0.3193 -1.1806 7 7 3.9757 0.5644 1.2528 8 6 5.2667 0.8033 1.7356 9 6 6.1315 1.6276 1.0307 10 6 7.4065 1.8626 1.5101 11 6 7.8242 1.2777 2.6916 12 6 6.9668 0.4598 3.4035 13 6 5.6879 0.2138 2.9272 14 7 4.8192 -0.6201 3.6443 15 6 4.8533 -0.6295 4.9916 16 8 5.6895 0.0214 5.5817 17 6 3.8525 -1.4490 5.7649 18 1 3.6982 -2.4036 5.2617 19 7 4.3596 -1.6875 7.1227 20 6 2.5247 -0.6927 5.8419 21 6 1.4733 -1.5755 6.5174 22 6 0.1654 -0.8307 6.5926 23 1 0.0913 0.1718 6.1978 24 6 -0.9367 -1.4291 7.1655 25 7 -0.8466 -2.6501 7.6459 26 14 -2.5581 -0.5063 7.2582 27 1 -2.3974 0.8391 6.6505 28 1 -3.6007 -1.2617 6.5182 29 1 -2.9656 -0.3628 8.6789 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.5359 -0.6725 -1.0910 36 1 3.6515 0.7808 -2.1122 37 1 5.0656 0.2336 -1.1804 38 1 3.3719 -0.0119 1.7470 39 1 5.8085 2.0863 0.1080 40 1 8.0785 2.5049 0.9602 41 1 8.8215 1.4642 3.0615 42 1 7.2945 0.0088 4.3285 43 1 4.1934 -1.1904 3.1709 44 1 4.5108 -0.8172 7.6103 45 1 3.7367 -2.2888 7.6410 46 1 2.6597 0.2202 6.4220 47 1 2.1928 -0.4379 4.8353 48 1 1.3384 -2.4884 5.9373 49 1 1.8052 -1.8303 7.5238 50 1 -1.6221 -3.0713 8.0486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424177124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:52 Heat of formation + Delta-G solvation = -61.371318 kcal Electronic energy + Delta-G solvation = -29479.477352 eV Core-core repulsion = 25506.195452 eV Total energy + Delta-G solvation = -3973.281900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57705 -39.09469 -38.20979 -35.97217 -35.52295 -34.58501 -32.88912 -31.77097 -29.95963 -29.87512 -28.19294 -27.56441 -26.44600 -25.83305 -24.20488 -23.07281 -21.84815 -20.82132 -20.48185 -19.80072 -18.26327 -17.30655 -16.98269 -16.54142 -16.34450 -16.15751 -15.68314 -15.10065 -14.97277 -14.66089 -14.48106 -14.38517 -14.26738 -13.98600 -13.78348 -13.57713 -13.19206 -13.12320 -12.90558 -12.59752 -12.36120 -12.20964 -12.06182 -11.75090 -11.70580 -11.49172 -11.28165 -11.20809 -11.09982 -10.96283 -10.69765 -10.26787 -10.07352 -10.01277 -9.93731 -9.85668 -9.30220 -9.21554 -8.47916 -8.32789 -8.21458 -7.22738 -6.12122 -4.15183 1.42946 1.64510 2.87179 3.07353 3.22408 3.30720 3.33340 3.34551 3.53763 3.96670 4.35786 4.49021 4.76444 4.86404 4.92334 5.01293 5.07986 5.12297 5.14323 5.17988 5.21174 5.24186 5.32453 5.39675 5.52188 5.52501 5.57309 5.58202 5.63272 5.68874 5.72468 5.96007 6.08975 6.20189 6.23605 6.35529 6.48357 6.62168 6.73659 6.82801 6.83514 6.95621 7.29163 7.39741 7.48111 7.56732 7.61304 7.66239 7.84790 7.87263 8.27322 8.39019 8.90814 9.49784 10.98806 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008661 B = 0.003669 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.078919 B = 7629.425090 C =10327.745958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.050 3.950 4 C 0.157 3.843 5 H 0.089 0.911 6 C -0.165 4.165 7 N -0.740 5.740 8 C 0.197 3.803 9 C -0.189 4.189 10 C -0.091 4.091 11 C -0.163 4.163 12 C -0.076 4.076 13 C 0.078 3.922 14 N -0.673 5.673 15 C 0.526 3.474 16 O -0.520 6.520 17 C 0.077 3.923 18 H 0.098 0.902 19 N -0.830 5.830 20 C -0.136 4.136 21 C 0.025 3.975 22 C -0.523 4.523 23 H 0.054 0.946 24 C 0.059 3.941 25 N -0.892 5.892 26 Si 0.891 3.109 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.402 0.598 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.405 0.595 44 H 0.346 0.654 45 H 0.355 0.645 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.019 0.981 49 H 0.018 0.982 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.117 6.743 -18.389 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.051 3.949 5 H 0.107 0.893 6 C -0.223 4.223 7 N -0.372 5.372 8 C 0.093 3.907 9 C -0.212 4.212 10 C -0.110 4.110 11 C -0.184 4.184 12 C -0.096 4.096 13 C -0.019 4.019 14 N -0.319 5.319 15 C 0.314 3.686 16 O -0.394 6.394 17 C -0.039 4.039 18 H 0.116 0.884 19 N -0.362 5.362 20 C -0.176 4.176 21 C -0.013 4.013 22 C -0.561 4.561 23 H 0.073 0.927 24 C -0.143 4.143 25 N -0.531 5.531 26 Si 0.719 3.281 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.241 0.759 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.265 6.640 -18.338 22.523 hybrid contribution -2.782 0.690 0.288 2.881 sum 8.483 7.330 -18.050 21.249 Atomic orbital electron populations 1.22785 0.80449 1.03253 1.00098 1.87872 1.20106 1.27060 1.95423 1.22850 0.93011 0.85724 1.01149 1.20934 0.91957 0.97243 0.84775 0.89312 1.22192 1.01673 1.01509 0.96960 1.44591 1.12157 1.55206 1.25256 1.17641 0.85665 0.94507 0.92886 1.20420 0.94666 1.04069 1.02046 1.20833 0.95261 0.98955 0.95947 1.20809 0.99971 1.01233 0.96364 1.21133 0.90688 0.97889 0.99931 1.17290 0.91217 0.99789 0.93618 1.43408 1.39034 1.42866 1.06623 1.21036 0.84810 0.81510 0.81288 1.90621 1.37346 1.42624 1.68771 1.21460 0.91904 0.98708 0.91800 0.88442 1.58738 1.53150 1.21492 1.02826 1.22379 0.93747 0.99760 1.01709 1.19106 0.92145 0.94529 0.95478 1.21195 0.95016 1.00944 1.38932 0.92745 1.25003 0.99026 0.94921 0.95319 1.69958 1.30338 1.13137 1.39672 0.86546 0.83736 0.79936 0.77849 1.19822 1.20946 1.20900 0.94241 0.89274 0.93550 0.92403 0.92044 0.91258 0.92205 0.92239 0.76215 0.86056 0.86455 0.86363 0.84325 0.75939 0.84066 0.82911 0.92634 0.92659 0.96284 0.96345 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.04 9.55 -35.23 -0.34 -4.38 16 3 C 0.05 0.44 5.68 37.16 0.21 0.65 16 4 C 0.16 1.37 2.67 -67.93 -0.18 1.19 16 5 H 0.09 0.69 6.49 -51.92 -0.34 0.35 16 6 C -0.16 -1.35 9.24 37.15 0.34 -1.01 16 7 N -0.74 -8.05 5.21 -52.01 -0.27 -8.32 16 8 C 0.20 2.43 6.66 -83.55 -0.56 1.88 16 9 C -0.19 -2.07 8.86 -39.41 -0.35 -2.42 16 10 C -0.09 -0.98 10.04 -39.57 -0.40 -1.37 16 11 C -0.16 -1.99 10.04 -39.56 -0.40 -2.39 16 12 C -0.08 -1.10 8.70 -39.42 -0.34 -1.44 16 13 C 0.08 1.11 6.33 -83.44 -0.53 0.58 16 14 N -0.67 -9.45 5.02 -9.71 -0.05 -9.50 16 15 C 0.53 8.79 6.93 -10.98 -0.08 8.71 16 16 O -0.52 -10.00 13.67 5.55 0.08 -9.93 16 17 C 0.08 1.29 3.21 -68.87 -0.22 1.07 16 18 H 0.10 1.54 8.14 -51.92 -0.42 1.11 16 19 N -0.83 -14.12 8.94 -5.66 -0.05 -14.17 16 20 C -0.14 -2.64 4.78 -26.73 -0.13 -2.77 16 21 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 22 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 23 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 24 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 25 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 26 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.50 7.72 -51.92 -0.40 0.10 16 38 H 0.40 4.63 7.00 -40.82 -0.29 4.35 16 39 H 0.12 1.08 6.13 -52.49 -0.32 0.76 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.14 2.23 6.20 -52.48 -0.33 1.91 16 43 H 0.41 4.88 7.72 -40.82 -0.32 4.57 16 44 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 45 H 0.36 6.05 7.55 -39.29 -0.30 5.76 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 50 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 405.37 15.07 6.11 6.11 Total: -1.00 -31.32 405.37 -8.84 -40.17 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -7.98 Total: 17.42 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.05 Total: -8.42 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.37 Total: -56.96 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.26 Total: -14.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.32 -8.84 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424177124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.204 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds