Wall clock time and date at job start Tue Mar 31 2020 18:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99892 * 2 1 4 4 C 1.53004 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46828 * 174.99839 * 4 3 2 6 6 C 1.52994 * 109.47067 * 55.00157 * 4 3 2 7 7 N 1.46504 * 109.47297 * 294.99681 * 4 3 2 8 8 C 1.39890 * 120.00010 * 205.00434 * 7 4 3 9 9 C 1.38718 * 120.09923 * 0.02562 * 8 7 4 10 10 C 1.38218 * 119.99229 * 179.97438 * 9 8 7 11 11 C 1.38291 * 120.19806 * 0.02562 * 10 9 8 12 12 C 1.38230 * 120.19355 * 359.68134 * 11 10 9 13 13 C 1.38672 * 120.00453 * 0.59334 * 12 11 10 14 14 N 1.40152 * 120.09839 * 179.70154 * 13 12 11 15 15 C 1.34781 * 119.99729 * 34.68566 * 14 13 12 16 16 O 1.21290 * 120.00101 * 355.51331 * 15 14 13 17 17 C 1.50700 * 119.99783 * 175.51647 * 15 14 13 18 18 H 1.09008 * 109.47145 * 39.99859 * 17 15 14 19 19 N 1.46894 * 109.47237 * 159.99734 * 17 15 14 20 20 C 1.52997 * 109.47315 * 279.99887 * 17 15 14 21 21 C 1.53006 * 109.47257 * 174.99794 * 20 17 15 22 22 C 1.50700 * 109.46986 * 180.02562 * 21 20 17 23 23 H 1.08002 * 120.00131 * 0.02562 * 22 21 20 24 24 C 1.37872 * 119.99892 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99968 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47370 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47224 * 119.99948 * 26 24 22 29 29 H 1.48498 * 109.47350 * 239.99667 * 26 24 22 30 30 H 1.09003 * 109.47349 * 60.00077 * 1 2 3 31 31 H 1.08998 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47253 * 299.99899 * 1 2 3 33 33 H 1.09002 * 109.47217 * 59.99977 * 3 2 1 34 34 H 1.08998 * 109.47128 * 299.99772 * 3 2 1 35 35 H 1.08995 * 109.47193 * 299.99321 * 6 4 3 36 36 H 1.08999 * 109.47376 * 60.00380 * 6 4 3 37 37 H 1.09010 * 109.46976 * 179.97438 * 6 4 3 38 38 H 0.96996 * 119.99726 * 25.00133 * 7 4 3 39 39 H 1.07994 * 120.00538 * 0.02562 * 9 8 7 40 40 H 1.08006 * 119.89936 * 180.02562 * 10 9 8 41 41 H 1.07995 * 119.90287 * 179.97438 * 11 10 9 42 42 H 1.08004 * 120.00028 * 180.32360 * 12 11 10 43 43 H 0.97002 * 120.00024 * 214.68535 * 14 13 12 44 44 H 1.00903 * 110.99874 * 60.00191 * 19 17 15 45 45 H 1.00899 * 111.00664 * 183.95365 * 19 17 15 46 46 H 1.09000 * 109.47388 * 295.00048 * 20 17 15 47 47 H 1.09008 * 109.47009 * 55.00219 * 20 17 15 48 48 H 1.09000 * 109.47129 * 300.00412 * 21 20 17 49 49 H 1.08996 * 109.46724 * 59.99940 * 21 20 17 50 50 H 0.97004 * 120.00121 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 -0.0890 6 6 3.9789 0.3193 -1.1806 7 7 3.9757 0.5644 1.2528 8 6 5.2667 0.8033 1.7356 9 6 6.1315 1.6276 1.0307 10 6 7.4065 1.8626 1.5101 11 6 7.8242 1.2777 2.6916 12 6 6.9668 0.4598 3.4035 13 6 5.6879 0.2138 2.9272 14 7 4.8192 -0.6201 3.6443 15 6 4.8533 -0.6295 4.9916 16 8 5.6895 0.0214 5.5817 17 6 3.8525 -1.4490 5.7649 18 1 3.6982 -2.4036 5.2617 19 7 4.3596 -1.6875 7.1227 20 6 2.5247 -0.6927 5.8419 21 6 1.4733 -1.5755 6.5174 22 6 0.1654 -0.8307 6.5926 23 1 0.0913 0.1718 6.1978 24 6 -0.9367 -1.4291 7.1655 25 7 -0.8466 -2.6501 7.6459 26 14 -2.5581 -0.5063 7.2582 27 1 -2.3974 0.8391 6.6505 28 1 -3.6007 -1.2617 6.5182 29 1 -2.9656 -0.3628 8.6789 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.5359 -0.6725 -1.0910 36 1 3.6515 0.7808 -2.1122 37 1 5.0656 0.2336 -1.1804 38 1 3.3719 -0.0119 1.7470 39 1 5.8085 2.0863 0.1080 40 1 8.0785 2.5049 0.9602 41 1 8.8215 1.4642 3.0615 42 1 7.2945 0.0088 4.3285 43 1 4.1934 -1.1904 3.1709 44 1 4.5108 -0.8172 7.6103 45 1 3.7367 -2.2888 7.6410 46 1 2.6597 0.2202 6.4220 47 1 2.1928 -0.4379 4.8353 48 1 1.3384 -2.4884 5.9373 49 1 1.8052 -1.8303 7.5238 50 1 -1.6221 -3.0713 8.0486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424177124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:51 Heat of formation + Delta-G solvation = -83.107729 kcal Electronic energy + Delta-G solvation = -29480.419913 eV Core-core repulsion = 25506.195452 eV Total energy + Delta-G solvation = -3974.224461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71297 -40.12031 -39.04841 -37.19234 -36.67176 -35.76014 -34.86224 -32.58801 -31.71787 -30.92709 -29.13229 -28.25451 -28.00735 -26.53518 -25.86305 -24.12248 -22.96704 -22.20511 -21.47379 -21.08181 -19.33779 -18.73043 -18.15537 -17.82630 -17.33297 -17.07746 -16.62921 -16.45265 -16.21120 -16.06368 -15.84474 -15.44830 -15.27249 -15.07255 -14.88292 -14.71512 -14.53366 -14.41147 -14.06194 -13.74705 -13.50161 -13.40473 -13.06934 -12.97232 -12.77454 -12.73527 -12.60300 -12.50729 -12.28192 -12.07530 -11.89497 -11.85451 -11.68681 -11.32552 -11.26256 -10.96274 -10.67946 -10.63903 -10.57925 -9.69599 -9.30530 -8.22931 -8.15070 -6.33177 0.44061 0.70348 1.36728 1.38593 1.49890 1.57657 1.97378 2.38110 2.44255 2.84453 3.01882 3.10901 3.65395 3.70466 3.81032 3.99124 4.06752 4.11113 4.18644 4.26477 4.36987 4.40598 4.48988 4.52623 4.56734 4.60754 4.62800 4.68116 4.71799 4.79524 4.86038 4.89540 4.98579 5.04268 5.06814 5.27164 5.39717 5.44288 5.46634 5.62528 5.65090 5.78096 5.78717 5.99113 6.02267 6.17361 6.19367 6.37478 6.44663 6.47602 6.71920 6.81858 7.13746 7.35919 8.88057 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008661 B = 0.003669 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.078919 B = 7629.425090 C =10327.745958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.049 3.951 4 C 0.154 3.846 5 H 0.106 0.894 6 C -0.157 4.157 7 N -0.741 5.741 8 C 0.197 3.803 9 C -0.188 4.188 10 C -0.081 4.081 11 C -0.173 4.173 12 C -0.096 4.096 13 C 0.048 3.952 14 N -0.659 5.659 15 C 0.526 3.474 16 O -0.548 6.548 17 C 0.085 3.915 18 H 0.110 0.890 19 N -0.828 5.828 20 C -0.118 4.118 21 C 0.031 3.969 22 C -0.543 4.543 23 H 0.053 0.947 24 C 0.007 3.993 25 N -0.926 5.926 26 Si 0.958 3.042 27 H -0.266 1.266 28 H -0.276 1.276 29 H -0.280 1.280 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.396 0.604 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.414 0.586 44 H 0.345 0.655 45 H 0.354 0.646 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.003 0.997 49 H 0.003 0.997 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 8.437 -20.819 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.028 4.028 4 C 0.049 3.951 5 H 0.124 0.876 6 C -0.216 4.216 7 N -0.371 5.371 8 C 0.092 3.908 9 C -0.211 4.211 10 C -0.100 4.100 11 C -0.193 4.193 12 C -0.117 4.117 13 C -0.049 4.049 14 N -0.305 5.305 15 C 0.314 3.686 16 O -0.425 6.425 17 C -0.031 4.031 18 H 0.128 0.872 19 N -0.360 5.360 20 C -0.158 4.158 21 C -0.006 4.006 22 C -0.581 4.581 23 H 0.071 0.929 24 C -0.192 4.192 25 N -0.566 5.566 26 Si 0.783 3.217 27 H -0.191 1.191 28 H -0.202 1.202 29 H -0.206 1.206 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.231 0.769 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.251 0.749 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.021 0.979 49 H 0.022 0.978 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.139 8.337 -20.817 25.038 hybrid contribution -2.710 0.176 0.970 2.884 sum 8.429 8.513 -19.846 23.182 Atomic orbital electron populations 1.22851 0.79943 1.03492 1.00579 1.87849 1.20806 1.28197 1.95552 1.22944 0.92894 0.85188 1.01817 1.21145 0.92108 0.97941 0.83901 0.87629 1.22117 1.01396 1.00555 0.97505 1.44743 1.11546 1.54976 1.25860 1.17763 0.86432 0.94342 0.92261 1.20778 0.94434 1.03243 1.02617 1.21216 0.95606 0.98101 0.95099 1.21034 1.00379 1.00952 0.96942 1.21089 0.91668 0.99175 0.99722 1.17470 0.91365 1.01247 0.94823 1.43201 1.38878 1.42666 1.05749 1.20872 0.84449 0.81154 0.82108 1.90611 1.38477 1.43851 1.69553 1.21367 0.90715 0.98958 0.92043 0.87188 1.58747 1.52929 1.21360 1.02942 1.22110 0.93921 0.98492 1.01253 1.18961 0.92494 0.94335 0.94805 1.21600 0.96498 1.01145 1.38824 0.92892 1.25838 1.02645 0.95741 0.94942 1.70066 1.31463 1.14572 1.40453 0.85509 0.79406 0.78900 0.77904 1.19060 1.20158 1.20584 0.92314 0.89271 0.94472 0.93397 0.89646 0.93054 0.90310 0.92340 0.76894 0.83421 0.83168 0.84922 0.86784 0.74945 0.84236 0.83039 0.93807 0.91885 0.97872 0.97823 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -7.99 9.55 -148.98 -1.42 -9.41 16 3 C 0.05 0.75 5.68 71.98 0.41 1.16 16 4 C 0.15 2.32 2.67 44.99 0.12 2.44 16 5 H 0.11 1.26 6.49 -2.38 -0.02 1.24 16 6 C -0.16 -2.19 9.24 71.98 0.66 -1.52 16 7 N -0.74 -15.08 5.21 -318.45 -1.66 -16.74 16 8 C 0.20 4.57 6.66 38.26 0.25 4.83 16 9 C -0.19 -3.57 8.86 22.38 0.20 -3.37 16 10 C -0.08 -1.51 10.04 22.28 0.22 -1.29 16 11 C -0.17 -4.01 10.04 22.28 0.22 -3.78 16 12 C -0.10 -2.81 8.70 22.37 0.19 -2.62 16 13 C 0.05 1.35 6.33 38.21 0.24 1.60 16 14 N -0.66 -18.70 5.02 -303.02 -1.52 -20.22 16 15 C 0.53 17.92 6.93 87.66 0.61 18.53 16 16 O -0.55 -21.73 13.67 -3.06 -0.04 -21.77 16 17 C 0.08 2.89 3.21 44.17 0.14 3.03 16 18 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 19 N -0.83 -28.83 8.94 -171.81 -1.54 -30.36 16 20 C -0.12 -4.63 4.78 30.59 0.15 -4.49 16 21 C 0.03 1.52 4.74 29.85 0.14 1.67 16 22 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 23 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 24 C 0.01 0.38 5.46 84.65 0.46 0.84 16 25 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 26 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 29 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.91 7.56 -2.39 -0.02 0.90 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.83 7.72 -2.38 -0.02 0.81 16 38 H 0.40 8.89 7.00 -92.71 -0.65 8.24 16 39 H 0.15 1.99 6.13 -2.91 -0.02 1.98 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.11 3.87 6.20 -2.91 -0.02 3.85 16 43 H 0.41 10.00 7.72 -92.71 -0.72 9.28 16 44 H 0.34 12.24 8.58 -89.69 -0.77 11.47 16 45 H 0.35 12.41 7.55 -89.69 -0.68 11.74 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 49 H 0.00 0.18 6.87 -2.39 -0.02 0.16 16 50 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -67.80 405.37 -0.19 -67.98 By element: Atomic # 1 Polarization: 51.60 SS G_CDS: -1.83 Total: 49.77 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.51 Total: -10.67 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -4.43 Total: -120.92 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.47 Total: -31.18 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -67.80 -0.19 -67.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424177124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.123 kcal (2) G-P(sol) polarization free energy of solvation -67.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds