Wall clock time and date at job start Tue Mar 31 2020 19:49:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46505 * 109.47381 * 2 1
4 4 C 1.46502 * 119.99938 * 270.00439 * 3 2 1
5 5 C 1.50698 * 109.47050 * 269.99408 * 4 3 2
6 6 H 1.08008 * 120.00077 * 0.02562 * 5 4 3
7 7 C 1.37874 * 120.00490 * 180.02562 * 5 4 3
8 8 N 1.31517 * 119.99230 * 359.97438 * 7 5 4
9 9 Si 1.86793 * 120.00551 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47064 * 59.99480 * 9 7 5
11 11 H 1.48502 * 109.47390 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47129 * 299.99797 * 9 7 5
13 13 C 1.34780 * 119.99838 * 89.99720 * 3 2 1
14 14 O 1.21582 * 119.99892 * 180.02562 * 13 3 2
15 15 N 1.34774 * 119.99933 * 0.02562 * 13 3 2
16 16 C 1.39939 * 119.99852 * 184.47286 * 15 13 3
17 17 C 1.38925 * 120.03679 * 143.47995 * 16 15 13
18 18 C 1.38129 * 120.03539 * 180.02562 * 17 16 15
19 19 C 1.38208 * 120.12551 * 359.72492 * 18 17 16
20 20 C 1.38756 * 120.08334 * 0.55228 * 19 18 17
21 21 O 1.35900 * 120.02167 * 179.72003 * 20 19 18
22 22 C 1.42898 * 117.00128 * 359.72728 * 21 20 19
23 23 C 1.53004 * 109.47258 * 179.97438 * 22 21 20
24 24 N 1.46900 * 109.46674 * 62.87317 * 23 22 21
25 25 C 1.46892 * 111.00245 * 75.92101 * 24 23 22
26 26 C 1.46905 * 110.99633 * 199.87562 * 24 23 22
27 27 C 1.38627 * 119.95971 * 359.44824 * 20 19 18
28 28 H 1.09000 * 109.47132 * 300.00138 * 1 2 3
29 29 H 1.09001 * 109.47112 * 59.99615 * 1 2 3
30 30 H 1.08994 * 109.46935 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47424 * 240.00587 * 2 1 3
32 32 H 1.08993 * 109.47551 * 119.99929 * 2 1 3
33 33 H 1.08998 * 109.47488 * 29.99739 * 4 3 2
34 34 H 1.09004 * 109.46863 * 149.99825 * 4 3 2
35 35 H 0.97000 * 119.99644 * 180.02562 * 8 7 5
36 36 H 0.96999 * 120.00046 * 4.48018 * 15 13 3
37 37 H 1.08000 * 119.98563 * 0.02562 * 17 16 15
38 38 H 1.08010 * 119.93422 * 180.02562 * 18 17 16
39 39 H 1.08012 * 119.95860 * 180.27570 * 19 18 17
40 40 H 1.09001 * 109.47134 * 300.00387 * 22 21 20
41 41 H 1.09001 * 109.46581 * 59.99987 * 22 21 20
42 42 H 1.09002 * 109.46632 * 182.86801 * 23 22 21
43 43 H 1.08994 * 109.47068 * 302.86810 * 23 22 21
44 44 H 1.09003 * 109.47378 * 59.99826 * 25 24 23
45 45 H 1.09005 * 109.47259 * 180.02562 * 25 24 23
46 46 H 1.08997 * 109.47317 * 299.99361 * 25 24 23
47 47 H 1.09002 * 109.46971 * 64.46103 * 26 24 23
48 48 H 1.09003 * 109.47003 * 184.46117 * 26 24 23
49 49 H 1.08995 * 109.46981 * 304.45716 * 26 24 23
50 50 H 1.08001 * 120.06368 * 180.25110 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0719 -1.2688
5 6 3.6857 1.8351 -1.7038
6 1 4.3427 1.2303 -1.0962
7 6 4.1494 2.3905 -2.8774
8 7 3.3493 3.1266 -3.6175
9 14 5.9134 2.0965 -3.4171
10 1 6.1402 0.6398 -3.5954
11 1 6.1609 2.7966 -4.7031
12 1 6.8413 2.6188 -2.3820
13 6 2.2430 2.0166 1.1672
14 8 2.6479 3.1630 1.1673
15 7 2.0187 1.3811 2.3344
16 6 2.1618 2.0692 3.5445
17 6 1.3012 1.8025 4.6020
18 6 1.4421 2.4822 5.7963
19 6 2.4422 3.4245 5.9443
20 6 3.3009 3.6990 4.8895
21 8 4.2803 4.6299 5.0347
22 6 4.3642 5.2917 6.2984
23 6 5.5182 6.2960 6.2725
24 7 5.2472 7.3271 5.2618
25 6 4.2411 8.2836 5.7421
26 6 6.4835 8.0164 4.8685
27 6 3.1627 3.0190 3.6894
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8934 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.5817 1.6878 -2.0284
34 1 2.0955 3.1411 -1.1383
35 1 3.6753 3.5171 -4.4434
36 1 1.7583 0.4467 2.3356
37 1 0.5216 1.0635 4.4904
38 1 0.7724 2.2733 6.6175
39 1 2.5527 3.9511 6.8809
40 1 3.4296 5.8165 6.4965
41 1 4.5410 4.5558 7.0828
42 1 5.6145 6.7640 7.2522
43 1 6.4448 5.7785 6.0244
44 1 4.6045 8.7690 6.6479
45 1 4.0591 9.0357 4.9743
46 1 3.3128 7.7556 5.9601
47 1 7.1539 7.3095 4.3796
48 1 6.2444 8.8264 4.1794
49 1 6.9694 8.4247 5.7546
50 1 3.8328 3.2284 2.8687
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000429108274.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:49:50
Heat of formation + Delta-G solvation = -19.724043 kcal
Electronic energy + Delta-G solvation = -29128.137759 eV
Core-core repulsion = 25156.661821 eV
Total energy + Delta-G solvation = -3971.475938 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.37923 -39.45183 -37.89399 -36.83698 -35.32290 -34.08715 -32.62941 -31.06445
-30.11728 -29.45348 -28.96479 -27.76659 -26.78896 -24.65142 -23.30684 -23.02326
-22.39915 -21.93266 -20.75670 -19.23101 -18.46639 -17.26459 -16.43965 -16.38254
-16.03666 -16.02368 -15.64103 -15.20637 -14.86774 -14.77828 -14.72851 -14.36584
-13.81974 -13.66430 -13.46183 -13.24641 -13.07443 -12.70606 -12.60080 -12.53448
-12.36263 -12.02725 -11.91345 -11.82876 -11.73792 -11.67589 -11.50746 -11.15882
-10.92158 -10.85359 -10.80565 -10.73332 -10.47893 -10.07967 -9.85624 -9.60141
-9.15145 -8.50823 -8.37727 -8.10457 -7.87844 -7.55044 -5.98782 -4.03230
1.53936 1.67203 3.10301 3.36302 3.40659 3.41708 3.46382 3.72062
3.78562 4.15529 4.42271 4.55673 4.69660 4.79260 4.96480 4.99643
5.11429 5.11915 5.13726 5.24273 5.28316 5.34530 5.35291 5.37550
5.42102 5.51961 5.58923 5.61390 5.67958 5.73446 5.77163 5.78005
5.96443 6.11884 6.22421 6.45678 6.46848 6.49492 6.61031 6.69324
6.79724 6.83358 6.93120 7.24495 7.41149 7.56970 7.68509 7.73291
7.99468 8.28886 8.64178 8.97403 9.31097 9.62086 11.09117
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.008837 B = 0.003310 C = 0.002548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3167.681168 B = 8458.278920 C =10984.963489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.107 3.893
3 N -0.607 5.607
4 C 0.261 3.739
5 C -0.527 4.527
6 H 0.056 0.944
7 C 0.062 3.938
8 N -0.895 5.895
9 Si 0.898 3.102
10 H -0.278 1.278
11 H -0.287 1.287
12 H -0.276 1.276
13 C 0.697 3.303
14 O -0.562 6.562
15 N -0.696 5.696
16 C 0.217 3.783
17 C -0.194 4.194
18 C -0.065 4.065
19 C -0.239 4.239
20 C 0.149 3.851
21 O -0.293 6.293
22 C 0.067 3.933
23 C 0.055 3.945
24 N -0.539 5.539
25 C 0.022 3.978
26 C 0.026 3.974
27 C -0.152 4.152
28 H 0.050 0.950
29 H 0.063 0.937
30 H 0.060 0.940
31 H 0.086 0.914
32 H 0.057 0.943
33 H 0.034 0.966
34 H 0.045 0.955
35 H 0.263 0.737
36 H 0.402 0.598
37 H 0.122 0.878
38 H 0.122 0.878
39 H 0.120 0.880
40 H 0.060 0.940
41 H 0.063 0.937
42 H 0.056 0.944
43 H 0.085 0.915
44 H 0.023 0.977
45 H 0.070 0.930
46 H 0.068 0.932
47 H 0.072 0.928
48 H 0.069 0.931
49 H 0.022 0.978
50 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.184 0.308 22.340 22.449
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.017 4.017
3 N -0.342 5.342
4 C 0.142 3.858
5 C -0.566 4.566
6 H 0.075 0.925
7 C -0.140 4.140
8 N -0.534 5.534
9 Si 0.725 3.275
10 H -0.203 1.203
11 H -0.212 1.212
12 H -0.202 1.202
13 C 0.399 3.601
14 O -0.438 6.438
15 N -0.346 5.346
16 C 0.120 3.880
17 C -0.215 4.215
18 C -0.084 4.084
19 C -0.259 4.259
20 C 0.103 3.897
21 O -0.206 6.206
22 C -0.010 4.010
23 C -0.073 4.073
24 N -0.263 5.263
25 C -0.126 4.126
26 C -0.122 4.122
27 C -0.173 4.173
28 H 0.070 0.930
29 H 0.082 0.918
30 H 0.079 0.921
31 H 0.105 0.895
32 H 0.075 0.925
33 H 0.052 0.948
34 H 0.063 0.937
35 H 0.073 0.927
36 H 0.239 0.761
37 H 0.140 0.860
38 H 0.140 0.860
39 H 0.138 0.862
40 H 0.078 0.922
41 H 0.081 0.919
42 H 0.074 0.926
43 H 0.104 0.896
44 H 0.041 0.959
45 H 0.089 0.911
46 H 0.086 0.914
47 H 0.090 0.910
48 H 0.088 0.912
49 H 0.041 0.959
50 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -1.939 1.093 21.437 21.553
hybrid contribution 0.950 -0.230 0.527 1.110
sum -0.989 0.863 21.964 22.004
Atomic orbital electron populations
1.22246 0.96702 1.01400 1.02581 1.21362 0.93572 0.84394 1.02379
1.47622 1.67119 1.13250 1.06228 1.19218 0.96153 0.93532 0.76887
1.21428 0.97010 1.31899 1.06230 0.92532 1.24914 0.97780 0.94919
0.96393 1.69925 1.35694 1.33430 1.14370 0.86568 0.84945 0.78161
0.77800 1.20326 1.21214 1.20150 1.15959 0.79233 0.84853 0.80088
1.90929 1.50811 1.16635 1.85377 1.42995 1.73727 1.14236 1.03652
1.17184 0.92526 0.93345 0.84931 1.20733 1.01024 1.05501 0.94230
1.20557 0.96622 0.94673 0.96537 1.21068 1.00721 1.05025 0.99047
1.18801 0.88235 0.89094 0.93565 1.86216 1.49346 1.50241 1.34785
1.22765 0.99112 0.94142 0.84937 1.22198 0.98496 0.92777 0.93874
1.61852 1.10639 1.13886 1.39933 1.22464 0.95931 0.95539 0.98663
1.22399 0.91258 0.99055 0.99466 1.20581 1.00457 0.99393 0.96898
0.93040 0.91829 0.92145 0.89533 0.92502 0.94837 0.93718 0.92702
0.76071 0.86043 0.85987 0.86163 0.92181 0.91899 0.92628 0.89635
0.95871 0.91076 0.91363 0.90965 0.91180 0.95934 0.83153
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16
2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16
3 N -0.61 -13.08 2.46 -180.80 -0.44 -13.52 16
4 C 0.26 6.92 5.16 -5.19 -0.03 6.89 16
5 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16
6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16
7 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16
8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16
9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
13 C 0.70 15.34 8.11 -86.92 -0.71 14.64 16
14 O -0.56 -14.95 13.45 5.29 0.07 -14.88 16
15 N -0.70 -11.83 5.21 -14.24 -0.07 -11.90 16
16 C 0.22 3.63 6.27 -83.71 -0.52 3.10 16
17 C -0.19 -2.57 9.97 -39.37 -0.39 -2.96 16
18 C -0.07 -0.77 10.03 -39.63 -0.40 -1.17 16
19 C -0.24 -3.06 9.04 -39.40 -0.36 -3.42 16
20 C 0.15 2.39 6.68 -39.25 -0.26 2.13 16
21 O -0.29 -4.59 10.05 -19.43 -0.20 -4.78 16
22 C 0.07 0.71 4.92 37.16 0.18 0.90 16
23 C 0.05 0.53 5.39 -3.82 -0.02 0.51 16
24 N -0.54 -6.22 4.86 -251.26 -1.22 -7.44 16
25 C 0.02 0.21 9.39 60.06 0.56 0.78 16
26 C 0.03 0.26 9.52 60.07 0.57 0.83 16
27 C -0.15 -2.84 8.62 -39.25 -0.34 -3.18 16
28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16
32 H 0.06 0.74 6.30 -51.93 -0.33 0.41 16
33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16
34 H 0.04 1.35 7.42 -51.93 -0.39 0.96 16
35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
36 H 0.40 5.42 6.52 -40.82 -0.27 5.15 16
37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
38 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16
39 H 0.12 1.21 6.29 -52.48 -0.33 0.88 16
40 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16
41 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16
42 H 0.06 0.41 7.96 -51.93 -0.41 -0.01 16
43 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16
44 H 0.02 0.18 8.09 -51.93 -0.42 -0.24 16
45 H 0.07 0.66 8.07 -51.93 -0.42 0.25 16
46 H 0.07 0.65 6.85 -51.93 -0.36 0.29 16
47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
48 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16
49 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16
50 H 0.15 3.36 6.33 -52.49 -0.33 3.03 16
LS Contribution 407.20 15.07 6.14 6.14
Total: -1.00 -35.43 407.20 -9.93 -45.36
By element:
Atomic # 1 Polarization: 13.07 SS G_CDS: -8.15 Total: 4.92 kcal
Atomic # 6 Polarization: 6.83 SS G_CDS: -1.77 Total: 5.06 kcal
Atomic # 7 Polarization: -58.03 SS G_CDS: -1.00 Total: -59.04 kcal
Atomic # 8 Polarization: -19.54 SS G_CDS: -0.12 Total: -19.66 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -35.43 -9.93 -45.36 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000429108274.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.638 kcal
(2) G-P(sol) polarization free energy of solvation -35.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.724 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds