Wall clock time and date at job start Tue Mar 31 2020 19:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47381 * 2 1 4 4 C 1.46502 * 119.99938 * 270.00439 * 3 2 1 5 5 C 1.50698 * 109.47050 * 269.99408 * 4 3 2 6 6 H 1.08008 * 120.00077 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00490 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99230 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00551 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47064 * 59.99480 * 9 7 5 11 11 H 1.48502 * 109.47390 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47129 * 299.99797 * 9 7 5 13 13 C 1.34780 * 119.99838 * 89.99720 * 3 2 1 14 14 O 1.21582 * 119.99892 * 180.02562 * 13 3 2 15 15 N 1.34774 * 119.99933 * 0.02562 * 13 3 2 16 16 C 1.39939 * 119.99852 * 184.47286 * 15 13 3 17 17 C 1.38925 * 120.03679 * 143.47995 * 16 15 13 18 18 C 1.38129 * 120.03539 * 180.02562 * 17 16 15 19 19 C 1.38208 * 120.12551 * 359.72492 * 18 17 16 20 20 C 1.38756 * 120.08334 * 0.55228 * 19 18 17 21 21 O 1.35900 * 120.02167 * 179.72003 * 20 19 18 22 22 C 1.42898 * 117.00128 * 359.72728 * 21 20 19 23 23 C 1.53004 * 109.47258 * 179.97438 * 22 21 20 24 24 N 1.46900 * 109.46674 * 62.87317 * 23 22 21 25 25 C 1.46892 * 111.00245 * 75.92101 * 24 23 22 26 26 C 1.46905 * 110.99633 * 199.87562 * 24 23 22 27 27 C 1.38627 * 119.95971 * 359.44824 * 20 19 18 28 28 H 1.09000 * 109.47132 * 300.00138 * 1 2 3 29 29 H 1.09001 * 109.47112 * 59.99615 * 1 2 3 30 30 H 1.08994 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47424 * 240.00587 * 2 1 3 32 32 H 1.08993 * 109.47551 * 119.99929 * 2 1 3 33 33 H 1.08998 * 109.47488 * 29.99739 * 4 3 2 34 34 H 1.09004 * 109.46863 * 149.99825 * 4 3 2 35 35 H 0.97000 * 119.99644 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00046 * 4.48018 * 15 13 3 37 37 H 1.08000 * 119.98563 * 0.02562 * 17 16 15 38 38 H 1.08010 * 119.93422 * 180.02562 * 18 17 16 39 39 H 1.08012 * 119.95860 * 180.27570 * 19 18 17 40 40 H 1.09001 * 109.47134 * 300.00387 * 22 21 20 41 41 H 1.09001 * 109.46581 * 59.99987 * 22 21 20 42 42 H 1.09002 * 109.46632 * 182.86801 * 23 22 21 43 43 H 1.08994 * 109.47068 * 302.86810 * 23 22 21 44 44 H 1.09003 * 109.47378 * 59.99826 * 25 24 23 45 45 H 1.09005 * 109.47259 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47317 * 299.99361 * 25 24 23 47 47 H 1.09002 * 109.46971 * 64.46103 * 26 24 23 48 48 H 1.09003 * 109.47003 * 184.46117 * 26 24 23 49 49 H 1.08995 * 109.46981 * 304.45716 * 26 24 23 50 50 H 1.08001 * 120.06368 * 180.25110 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6175 9 14 5.9134 2.0965 -3.4171 10 1 6.1402 0.6398 -3.5954 11 1 6.1609 2.7966 -4.7031 12 1 6.8413 2.6188 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6479 3.1630 1.1673 15 7 2.0187 1.3811 2.3344 16 6 2.1618 2.0692 3.5445 17 6 1.3012 1.8025 4.6020 18 6 1.4421 2.4822 5.7963 19 6 2.4422 3.4245 5.9443 20 6 3.3009 3.6990 4.8895 21 8 4.2803 4.6299 5.0347 22 6 4.3642 5.2917 6.2984 23 6 5.5182 6.2960 6.2725 24 7 5.2472 7.3271 5.2618 25 6 4.2411 8.2836 5.7421 26 6 6.4835 8.0164 4.8685 27 6 3.1627 3.0190 3.6894 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 3.6753 3.5171 -4.4434 36 1 1.7583 0.4467 2.3356 37 1 0.5216 1.0635 4.4904 38 1 0.7724 2.2733 6.6175 39 1 2.5527 3.9511 6.8809 40 1 3.4296 5.8165 6.4965 41 1 4.5410 4.5558 7.0828 42 1 5.6145 6.7640 7.2522 43 1 6.4448 5.7785 6.0244 44 1 4.6045 8.7690 6.6479 45 1 4.0591 9.0357 4.9743 46 1 3.3128 7.7556 5.9601 47 1 7.1539 7.3095 4.3796 48 1 6.2444 8.8264 4.1794 49 1 6.9694 8.4247 5.7546 50 1 3.8328 3.2284 2.8687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429108274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:50 Heat of formation + Delta-G solvation = -19.724043 kcal Electronic energy + Delta-G solvation = -29128.137759 eV Core-core repulsion = 25156.661821 eV Total energy + Delta-G solvation = -3971.475938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.37923 -39.45183 -37.89399 -36.83698 -35.32290 -34.08715 -32.62941 -31.06445 -30.11728 -29.45348 -28.96479 -27.76659 -26.78896 -24.65142 -23.30684 -23.02326 -22.39915 -21.93266 -20.75670 -19.23101 -18.46639 -17.26459 -16.43965 -16.38254 -16.03666 -16.02368 -15.64103 -15.20637 -14.86774 -14.77828 -14.72851 -14.36584 -13.81974 -13.66430 -13.46183 -13.24641 -13.07443 -12.70606 -12.60080 -12.53448 -12.36263 -12.02725 -11.91345 -11.82876 -11.73792 -11.67589 -11.50746 -11.15882 -10.92158 -10.85359 -10.80565 -10.73332 -10.47893 -10.07967 -9.85624 -9.60141 -9.15145 -8.50823 -8.37727 -8.10457 -7.87844 -7.55044 -5.98782 -4.03230 1.53936 1.67203 3.10301 3.36302 3.40659 3.41708 3.46382 3.72062 3.78562 4.15529 4.42271 4.55673 4.69660 4.79260 4.96480 4.99643 5.11429 5.11915 5.13726 5.24273 5.28316 5.34530 5.35291 5.37550 5.42102 5.51961 5.58923 5.61390 5.67958 5.73446 5.77163 5.78005 5.96443 6.11884 6.22421 6.45678 6.46848 6.49492 6.61031 6.69324 6.79724 6.83358 6.93120 7.24495 7.41149 7.56970 7.68509 7.73291 7.99468 8.28886 8.64178 8.97403 9.31097 9.62086 11.09117 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.003310 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.681168 B = 8458.278920 C =10984.963489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.607 5.607 4 C 0.261 3.739 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.697 3.303 14 O -0.562 6.562 15 N -0.696 5.696 16 C 0.217 3.783 17 C -0.194 4.194 18 C -0.065 4.065 19 C -0.239 4.239 20 C 0.149 3.851 21 O -0.293 6.293 22 C 0.067 3.933 23 C 0.055 3.945 24 N -0.539 5.539 25 C 0.022 3.978 26 C 0.026 3.974 27 C -0.152 4.152 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.402 0.598 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.022 0.978 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 0.308 22.340 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.342 5.342 4 C 0.142 3.858 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.399 3.601 14 O -0.438 6.438 15 N -0.346 5.346 16 C 0.120 3.880 17 C -0.215 4.215 18 C -0.084 4.084 19 C -0.259 4.259 20 C 0.103 3.897 21 O -0.206 6.206 22 C -0.010 4.010 23 C -0.073 4.073 24 N -0.263 5.263 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.173 4.173 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.041 0.959 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.939 1.093 21.437 21.553 hybrid contribution 0.950 -0.230 0.527 1.110 sum -0.989 0.863 21.964 22.004 Atomic orbital electron populations 1.22246 0.96702 1.01400 1.02581 1.21362 0.93572 0.84394 1.02379 1.47622 1.67119 1.13250 1.06228 1.19218 0.96153 0.93532 0.76887 1.21428 0.97010 1.31899 1.06230 0.92532 1.24914 0.97780 0.94919 0.96393 1.69925 1.35694 1.33430 1.14370 0.86568 0.84945 0.78161 0.77800 1.20326 1.21214 1.20150 1.15959 0.79233 0.84853 0.80088 1.90929 1.50811 1.16635 1.85377 1.42995 1.73727 1.14236 1.03652 1.17184 0.92526 0.93345 0.84931 1.20733 1.01024 1.05501 0.94230 1.20557 0.96622 0.94673 0.96537 1.21068 1.00721 1.05025 0.99047 1.18801 0.88235 0.89094 0.93565 1.86216 1.49346 1.50241 1.34785 1.22765 0.99112 0.94142 0.84937 1.22198 0.98496 0.92777 0.93874 1.61852 1.10639 1.13886 1.39933 1.22464 0.95931 0.95539 0.98663 1.22399 0.91258 0.99055 0.99466 1.20581 1.00457 0.99393 0.96898 0.93040 0.91829 0.92145 0.89533 0.92502 0.94837 0.93718 0.92702 0.76071 0.86043 0.85987 0.86163 0.92181 0.91899 0.92628 0.89635 0.95871 0.91076 0.91363 0.90965 0.91180 0.95934 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.61 -13.08 2.46 -180.80 -0.44 -13.52 16 4 C 0.26 6.92 5.16 -5.19 -0.03 6.89 16 5 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.70 15.34 8.11 -86.92 -0.71 14.64 16 14 O -0.56 -14.95 13.45 5.29 0.07 -14.88 16 15 N -0.70 -11.83 5.21 -14.24 -0.07 -11.90 16 16 C 0.22 3.63 6.27 -83.71 -0.52 3.10 16 17 C -0.19 -2.57 9.97 -39.37 -0.39 -2.96 16 18 C -0.07 -0.77 10.03 -39.63 -0.40 -1.17 16 19 C -0.24 -3.06 9.04 -39.40 -0.36 -3.42 16 20 C 0.15 2.39 6.68 -39.25 -0.26 2.13 16 21 O -0.29 -4.59 10.05 -19.43 -0.20 -4.78 16 22 C 0.07 0.71 4.92 37.16 0.18 0.90 16 23 C 0.05 0.53 5.39 -3.82 -0.02 0.51 16 24 N -0.54 -6.22 4.86 -251.26 -1.22 -7.44 16 25 C 0.02 0.21 9.39 60.06 0.56 0.78 16 26 C 0.03 0.26 9.52 60.07 0.57 0.83 16 27 C -0.15 -2.84 8.62 -39.25 -0.34 -3.18 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 32 H 0.06 0.74 6.30 -51.93 -0.33 0.41 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.35 7.42 -51.93 -0.39 0.96 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.40 5.42 6.52 -40.82 -0.27 5.15 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.21 6.29 -52.48 -0.33 0.88 16 40 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 41 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 42 H 0.06 0.41 7.96 -51.93 -0.41 -0.01 16 43 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 44 H 0.02 0.18 8.09 -51.93 -0.42 -0.24 16 45 H 0.07 0.66 8.07 -51.93 -0.42 0.25 16 46 H 0.07 0.65 6.85 -51.93 -0.36 0.29 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 49 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 50 H 0.15 3.36 6.33 -52.49 -0.33 3.03 16 LS Contribution 407.20 15.07 6.14 6.14 Total: -1.00 -35.43 407.20 -9.93 -45.36 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.15 Total: 4.92 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.77 Total: 5.06 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -1.00 Total: -59.04 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.12 Total: -19.66 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.43 -9.93 -45.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429108274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.638 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds