Wall clock time and date at job start Tue Mar 31 2020 19:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47381 * 2 1 4 4 C 1.46502 * 119.99938 * 270.00439 * 3 2 1 5 5 C 1.50698 * 109.47050 * 269.99408 * 4 3 2 6 6 H 1.08008 * 120.00077 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00490 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99230 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00551 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47064 * 59.99480 * 9 7 5 11 11 H 1.48502 * 109.47390 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47129 * 299.99797 * 9 7 5 13 13 C 1.34780 * 119.99838 * 89.99720 * 3 2 1 14 14 O 1.21582 * 119.99892 * 180.02562 * 13 3 2 15 15 N 1.34774 * 119.99933 * 0.02562 * 13 3 2 16 16 C 1.39939 * 119.99852 * 184.47286 * 15 13 3 17 17 C 1.38925 * 120.03679 * 143.47995 * 16 15 13 18 18 C 1.38129 * 120.03539 * 180.02562 * 17 16 15 19 19 C 1.38208 * 120.12551 * 359.72492 * 18 17 16 20 20 C 1.38756 * 120.08334 * 0.55228 * 19 18 17 21 21 O 1.35900 * 120.02167 * 179.72003 * 20 19 18 22 22 C 1.42898 * 117.00128 * 359.72728 * 21 20 19 23 23 C 1.53004 * 109.47258 * 179.97438 * 22 21 20 24 24 N 1.46900 * 109.46674 * 62.87317 * 23 22 21 25 25 C 1.46892 * 111.00245 * 75.92101 * 24 23 22 26 26 C 1.46905 * 110.99633 * 199.87562 * 24 23 22 27 27 C 1.38627 * 119.95971 * 359.44824 * 20 19 18 28 28 H 1.09000 * 109.47132 * 300.00138 * 1 2 3 29 29 H 1.09001 * 109.47112 * 59.99615 * 1 2 3 30 30 H 1.08994 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47424 * 240.00587 * 2 1 3 32 32 H 1.08993 * 109.47551 * 119.99929 * 2 1 3 33 33 H 1.08998 * 109.47488 * 29.99739 * 4 3 2 34 34 H 1.09004 * 109.46863 * 149.99825 * 4 3 2 35 35 H 0.97000 * 119.99644 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00046 * 4.48018 * 15 13 3 37 37 H 1.08000 * 119.98563 * 0.02562 * 17 16 15 38 38 H 1.08010 * 119.93422 * 180.02562 * 18 17 16 39 39 H 1.08012 * 119.95860 * 180.27570 * 19 18 17 40 40 H 1.09001 * 109.47134 * 300.00387 * 22 21 20 41 41 H 1.09001 * 109.46581 * 59.99987 * 22 21 20 42 42 H 1.09002 * 109.46632 * 182.86801 * 23 22 21 43 43 H 1.08994 * 109.47068 * 302.86810 * 23 22 21 44 44 H 1.09003 * 109.47378 * 59.99826 * 25 24 23 45 45 H 1.09005 * 109.47259 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47317 * 299.99361 * 25 24 23 47 47 H 1.09002 * 109.46971 * 64.46103 * 26 24 23 48 48 H 1.09003 * 109.47003 * 184.46117 * 26 24 23 49 49 H 1.08995 * 109.46981 * 304.45716 * 26 24 23 50 50 H 1.08001 * 120.06368 * 180.25110 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6175 9 14 5.9134 2.0965 -3.4171 10 1 6.1402 0.6398 -3.5954 11 1 6.1609 2.7966 -4.7031 12 1 6.8413 2.6188 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6479 3.1630 1.1673 15 7 2.0187 1.3811 2.3344 16 6 2.1618 2.0692 3.5445 17 6 1.3012 1.8025 4.6020 18 6 1.4421 2.4822 5.7963 19 6 2.4422 3.4245 5.9443 20 6 3.3009 3.6990 4.8895 21 8 4.2803 4.6299 5.0347 22 6 4.3642 5.2917 6.2984 23 6 5.5182 6.2960 6.2725 24 7 5.2472 7.3271 5.2618 25 6 4.2411 8.2836 5.7421 26 6 6.4835 8.0164 4.8685 27 6 3.1627 3.0190 3.6894 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 3.6753 3.5171 -4.4434 36 1 1.7583 0.4467 2.3356 37 1 0.5216 1.0635 4.4904 38 1 0.7724 2.2733 6.6175 39 1 2.5527 3.9511 6.8809 40 1 3.4296 5.8165 6.4965 41 1 4.5410 4.5558 7.0828 42 1 5.6145 6.7640 7.2522 43 1 6.4448 5.7785 6.0244 44 1 4.6045 8.7690 6.6479 45 1 4.0591 9.0357 4.9743 46 1 3.3128 7.7556 5.9601 47 1 7.1539 7.3095 4.3796 48 1 6.2444 8.8264 4.1794 49 1 6.9694 8.4247 5.7546 50 1 3.8328 3.2284 2.8687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429108274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:49 Heat of formation + Delta-G solvation = -44.412600 kcal Electronic energy + Delta-G solvation = -29129.208335 eV Core-core repulsion = 25156.661821 eV Total energy + Delta-G solvation = -3972.546514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77070 -40.72909 -38.93959 -37.86519 -36.99272 -35.60801 -34.69128 -32.02105 -31.63565 -30.68264 -30.07952 -28.68618 -28.51527 -25.63023 -25.07176 -24.39652 -23.61911 -23.04881 -21.77522 -20.75490 -19.72364 -18.82927 -18.47970 -17.46358 -17.30431 -17.11679 -16.75418 -16.62302 -16.34727 -15.92901 -15.75822 -15.66702 -15.21289 -15.19843 -14.67362 -14.59399 -14.30863 -14.16895 -13.65144 -13.55945 -13.43769 -13.32439 -13.27677 -13.10365 -12.78137 -12.72205 -12.68271 -12.61913 -12.53371 -12.49011 -12.19401 -11.96792 -11.82082 -11.75736 -11.73557 -11.14156 -10.88434 -10.63691 -9.60528 -9.28116 -9.24051 -8.91033 -8.21421 -6.36379 0.37429 0.56374 1.35039 1.40286 1.47068 1.70797 2.17978 2.33136 2.41037 2.91677 2.98511 3.04137 3.09226 3.87203 4.00866 4.05706 4.08712 4.15427 4.26379 4.33968 4.35735 4.37217 4.41692 4.42832 4.49810 4.54831 4.59000 4.66977 4.70625 4.77581 4.80638 4.93238 4.96667 4.97656 4.99374 5.01973 5.19792 5.36333 5.39094 5.42285 5.45523 5.56572 5.57339 5.81881 5.97918 6.05028 6.06888 6.10180 6.11773 6.63773 6.71965 7.07053 7.30562 7.65252 8.84963 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.003310 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.681168 B = 8458.278920 C =10984.963489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.613 5.613 4 C 0.280 3.720 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.276 1.276 12 H -0.282 1.282 13 C 0.692 3.308 14 O -0.620 6.620 15 N -0.675 5.675 16 C 0.191 3.809 17 C -0.182 4.182 18 C -0.052 4.052 19 C -0.227 4.227 20 C 0.136 3.864 21 O -0.327 6.327 22 C 0.059 3.941 23 C 0.055 3.945 24 N -0.576 5.576 25 C 0.024 3.976 26 C 0.028 3.972 27 C -0.193 4.193 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.029 0.971 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.421 0.579 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -1.533 25.740 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.158 3.842 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.208 1.208 13 C 0.394 3.606 14 O -0.500 6.500 15 N -0.326 5.326 16 C 0.096 3.904 17 C -0.203 4.203 18 C -0.070 4.070 19 C -0.246 4.246 20 C 0.090 3.910 21 O -0.240 6.240 22 C -0.016 4.016 23 C -0.073 4.073 24 N -0.301 5.301 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.215 4.215 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.174 0.826 38 H 0.188 0.812 39 H 0.173 0.827 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.904 -0.819 24.886 25.068 hybrid contribution 1.218 0.389 -0.408 1.342 sum -1.686 -0.431 24.478 24.540 Atomic orbital electron populations 1.22163 0.94259 1.03697 1.01753 1.21728 0.95542 0.81216 1.03802 1.47498 1.67389 1.15237 1.04606 1.18624 0.95263 0.91222 0.79042 1.21698 0.97998 1.32130 1.06526 0.93145 1.25825 1.02314 0.94430 0.96390 1.70043 1.37747 1.34078 1.14794 0.85500 0.79057 0.79136 0.77298 1.18227 1.20058 1.20823 1.16165 0.78800 0.84333 0.81306 1.90896 1.53214 1.19463 1.86428 1.42590 1.72853 1.14831 1.02333 1.17481 0.93520 0.93891 0.85551 1.21097 1.00316 1.05703 0.93196 1.21150 0.96104 0.92722 0.97029 1.21461 0.99428 1.04712 0.99000 1.18917 0.89249 0.89204 0.93626 1.86185 1.49597 1.50549 1.37711 1.23112 1.00007 0.94755 0.83698 1.22266 0.97797 0.92270 0.94931 1.61822 1.11651 1.15118 1.41534 1.22444 0.95476 0.95121 0.99316 1.22357 0.90824 0.98579 1.00224 1.20388 1.01700 1.02425 0.96979 0.92494 0.94055 0.88141 0.90189 0.88993 0.95265 0.98709 0.92368 0.73892 0.82617 0.81187 0.82736 0.91273 0.89267 0.89476 0.90403 0.93733 0.91712 0.91591 0.92236 0.91438 0.93856 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.10 3.11 5.93 86.38 0.51 3.62 16 3 N -0.61 -27.60 2.46 -844.20 -2.07 -29.67 16 4 C 0.28 15.81 5.16 85.63 0.44 16.25 16 5 C -0.54 -32.79 9.39 25.60 0.24 -32.55 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 9 Si 0.97 46.69 29.54 68.60 2.03 48.72 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 13 C 0.69 32.22 8.11 179.05 1.45 33.67 16 14 O -0.62 -36.04 13.45 -3.97 -0.05 -36.09 16 15 N -0.67 -23.15 5.21 -317.23 -1.65 -24.80 16 16 C 0.19 6.41 6.27 38.13 0.24 6.65 16 17 C -0.18 -4.24 9.97 22.41 0.22 -4.01 16 18 C -0.05 -0.99 10.03 22.24 0.22 -0.77 16 19 C -0.23 -5.13 9.04 22.39 0.20 -4.92 16 20 C 0.14 4.43 6.68 22.49 0.15 4.58 16 21 O -0.33 -10.59 10.05 -92.43 -0.93 -11.52 16 22 C 0.06 1.19 4.92 71.98 0.35 1.55 16 23 C 0.06 1.02 5.39 86.30 0.47 1.48 16 24 N -0.58 -13.36 4.86 -948.84 -4.61 -17.97 16 25 C 0.02 0.44 9.39 127.69 1.20 1.64 16 26 C 0.03 0.56 9.52 127.69 1.22 1.77 16 27 C -0.19 -7.72 8.62 22.48 0.19 -7.53 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 32 H 0.09 2.21 6.30 -2.39 -0.02 2.19 16 33 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 34 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.42 10.66 6.52 -92.71 -0.60 10.05 16 37 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.16 2.39 6.29 -2.90 -0.02 2.37 16 40 H 0.07 1.24 6.38 -2.39 -0.02 1.23 16 41 H 0.09 1.29 7.65 -2.39 -0.02 1.27 16 42 H 0.09 1.05 7.96 -2.39 -0.02 1.03 16 43 H 0.08 1.52 7.93 -2.39 -0.02 1.50 16 44 H 0.04 0.61 8.09 -2.39 -0.02 0.59 16 45 H 0.06 1.23 8.07 -2.38 -0.02 1.21 16 46 H 0.07 1.20 6.85 -2.39 -0.02 1.19 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 49 H 0.04 0.66 8.13 -2.39 -0.02 0.64 16 50 H 0.09 4.80 6.33 -2.91 -0.02 4.78 16 Total: -1.00 -86.51 407.20 1.63 -84.89 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.33 Total: 24.74 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 8.31 Total: 19.18 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -8.06 Total: -129.91 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.98 Total: -47.61 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -86.51 1.63 -84.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429108274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.475 kcal (2) G-P(sol) polarization free energy of solvation -86.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds