Wall clock time and date at job start Tue Mar 31 2020 19:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46936 * 2 1 4 4 O 1.42894 * 109.47249 * 240.00128 * 2 1 3 5 5 C 1.35681 * 117.00007 * 89.99726 * 4 2 1 6 6 C 1.38918 * 119.68251 * 179.72755 * 5 4 2 7 7 C 1.38376 * 119.11108 * 179.75274 * 6 5 4 8 8 C 1.38832 * 118.48499 * 0.51155 * 7 6 5 9 9 C 1.38044 * 119.28809 * 359.73429 * 8 7 6 10 10 N 1.31971 * 120.83527 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47019 * 119.99619 * 2 1 3 12 12 O 1.21283 * 119.99696 * 103.93951 * 11 2 1 13 13 N 1.34769 * 120.00188 * 283.93837 * 11 2 1 14 14 C 1.46494 * 120.00290 * 5.09192 * 13 11 2 15 15 C 1.50701 * 109.47387 * 95.75403 * 14 13 11 16 16 H 1.07999 * 119.99450 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00309 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99877 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00156 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47296 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46991 * 119.99818 * 19 17 15 22 22 H 1.48500 * 109.47692 * 240.00057 * 19 17 15 23 23 C 1.46505 * 119.99717 * 185.08961 * 13 11 2 24 24 C 1.53006 * 109.47025 * 90.00337 * 23 13 11 25 25 C 1.52994 * 109.47159 * 179.97438 * 24 23 13 26 26 N 1.46901 * 109.47398 * 179.97438 * 25 24 23 27 27 C 1.46892 * 111.00122 * 169.99564 * 26 25 24 28 28 C 1.46899 * 111.00021 * 293.95601 * 26 25 24 29 29 H 1.09003 * 109.47545 * 306.71409 * 1 2 3 30 30 H 1.08997 * 109.47271 * 66.71853 * 1 2 3 31 31 H 1.09005 * 109.47094 * 186.71305 * 1 2 3 32 32 H 1.08001 * 120.44811 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.75843 * 180.23885 * 7 6 5 34 34 H 1.08000 * 120.35677 * 179.70474 * 8 7 6 35 35 H 1.08000 * 119.58397 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.47186 * 215.75822 * 14 13 11 37 37 H 1.08998 * 109.46895 * 335.75276 * 14 13 11 38 38 H 0.96997 * 120.00043 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46844 * 209.99649 * 23 13 11 40 40 H 1.09000 * 109.47374 * 330.00027 * 23 13 11 41 41 H 1.09003 * 109.46709 * 299.99856 * 24 23 13 42 42 H 1.09000 * 109.47298 * 59.99643 * 24 23 13 43 43 H 1.08998 * 109.47176 * 300.00068 * 25 24 23 44 44 H 1.09000 * 109.47267 * 59.99673 * 25 24 23 45 45 H 1.09004 * 109.46872 * 60.00334 * 27 26 25 46 46 H 1.09002 * 109.47313 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47800 * 300.00507 * 27 26 25 48 48 H 1.09003 * 109.47397 * 59.99586 * 28 26 25 49 49 H 1.08991 * 109.47088 * 179.97438 * 28 26 25 50 50 H 1.08999 * 109.46813 * 299.99269 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2116 0.0830 -2.2741 6 6 2.6796 -0.5138 -3.4380 7 6 2.8799 0.2681 -4.5620 8 6 2.6138 1.6281 -4.4784 9 6 2.1557 2.1547 -3.2875 10 7 1.9697 1.3825 -2.2335 11 6 2.0323 -0.7103 1.2305 12 8 2.4730 -1.8369 1.1429 13 7 1.9919 -0.0938 2.4282 14 6 1.3586 1.2212 2.5542 15 6 -0.0660 1.0507 3.0154 16 1 -0.4600 0.0616 3.1969 17 6 -0.8662 2.1572 3.2055 18 7 -0.3862 3.3616 2.9850 19 14 -2.6321 1.9458 3.7765 20 1 -2.9258 0.5008 3.9524 21 1 -2.8218 2.6500 5.0701 22 1 -3.5525 2.5184 2.7615 23 6 2.5812 -0.7387 3.6043 24 6 4.0497 -0.3275 3.7292 25 6 4.6650 -1.0005 4.9577 26 7 6.0750 -0.6063 5.0773 27 6 6.6345 -1.0367 6.3655 28 6 6.8659 -1.1334 3.9573 29 1 -0.3634 0.6144 0.8238 30 1 -0.3633 0.4062 -0.9439 31 1 -0.3633 -1.0207 0.1201 32 1 2.8802 -1.5747 -3.4666 33 1 3.2392 -0.1689 -5.4819 34 1 2.7641 2.2673 -5.3359 35 1 1.9468 3.2120 -3.2173 36 1 1.9067 1.8202 3.2814 37 1 1.3697 1.7239 1.5871 38 1 -0.9492 4.1401 3.1184 39 1 2.0399 -0.4287 4.4981 40 1 2.5149 -1.8213 3.4965 41 1 4.5910 -0.6375 2.8353 42 1 4.1160 0.7551 3.8370 43 1 4.1235 -0.6902 5.8514 44 1 4.5986 -2.0832 4.8504 45 1 6.5669 -2.1217 6.4466 46 1 7.6794 -0.7326 6.4277 47 1 6.0727 -0.5760 7.1779 48 1 6.4722 -0.7428 3.0189 49 1 7.9055 -0.8264 4.0704 50 1 6.8067 -2.2218 3.9512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449804936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:18 Heat of formation + Delta-G solvation = -29.010577 kcal Electronic energy + Delta-G solvation = -29699.529206 eV Core-core repulsion = 25727.650573 eV Total energy + Delta-G solvation = -3971.878633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55061 -39.33828 -37.75831 -37.24524 -35.19876 -33.08793 -32.41845 -32.04102 -30.94938 -29.66609 -27.60315 -27.41593 -26.10284 -24.28918 -23.50468 -23.02731 -22.94652 -21.73056 -20.59795 -18.68324 -18.19970 -16.82934 -16.41470 -16.27764 -15.78442 -15.72314 -15.41623 -15.36413 -15.02159 -14.65457 -14.51634 -14.36363 -13.98967 -13.76899 -13.32381 -13.16768 -12.91580 -12.68212 -12.40492 -12.33197 -12.12649 -11.92971 -11.82753 -11.76703 -11.55728 -11.44342 -11.31184 -11.17868 -10.96513 -10.88916 -10.75967 -10.56877 -10.24837 -10.09158 -9.89017 -9.74016 -9.42331 -9.00282 -8.57164 -8.34512 -8.33371 -7.76947 -6.21669 -4.28482 1.23446 1.35081 2.99773 3.20131 3.27337 3.30181 3.35920 3.87859 3.91581 4.15996 4.31272 4.45076 4.86108 5.05598 5.08677 5.11110 5.14801 5.18595 5.24469 5.29182 5.31411 5.38384 5.56222 5.63912 5.66193 5.68841 5.71942 5.77112 5.79728 5.80602 5.91490 5.99074 6.01630 6.17823 6.20704 6.33608 6.34983 6.47851 6.57799 6.62306 6.75362 7.00402 7.04539 7.07588 7.17733 7.42436 7.57481 7.72574 8.00119 8.00780 8.26296 8.74523 8.93641 9.37851 10.84592 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006470 B = 0.004455 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4326.723884 B = 6284.252485 C = 9622.089800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 H 0.113 0.887 4 O -0.284 6.284 5 C 0.331 3.669 6 C -0.197 4.197 7 C -0.043 4.043 8 C -0.224 4.224 9 C 0.143 3.857 10 N -0.535 5.535 11 C 0.520 3.480 12 O -0.558 6.558 13 N -0.588 5.588 14 C 0.231 3.769 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.893 3.107 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.124 3.876 24 C -0.130 4.130 25 C 0.059 3.941 26 N -0.548 5.548 27 C 0.025 3.975 28 C 0.022 3.978 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.266 0.734 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.022 0.978 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 -3.919 -6.706 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.130 0.870 4 O -0.190 6.190 5 C 0.152 3.848 6 C -0.217 4.217 7 C -0.069 4.069 8 C -0.244 4.244 9 C -0.013 4.013 10 N -0.258 5.258 11 C 0.307 3.693 12 O -0.438 6.438 13 N -0.319 5.319 14 C 0.111 3.889 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.000 4.000 24 C -0.169 4.169 25 C -0.069 4.069 26 N -0.272 5.272 27 C -0.123 4.123 28 C -0.126 4.126 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.119 -3.723 -5.890 11.476 hybrid contribution -0.833 -0.919 -0.342 1.286 sum 8.286 -4.641 -6.232 11.360 Atomic orbital electron populations 1.22411 0.91695 1.03631 1.05211 1.22175 0.96685 0.97483 0.81522 0.86962 1.86328 1.79448 1.35106 1.18078 1.19989 0.90148 0.87374 0.87323 1.21068 1.06959 1.02062 0.91640 1.21346 0.94615 0.93489 0.97441 1.21927 1.06350 0.96153 0.99971 1.22478 0.92176 0.99340 0.87285 1.67398 1.21241 1.04786 1.32419 1.20036 0.78498 0.86072 0.84697 1.90609 1.48209 1.18645 1.86303 1.48061 1.55586 1.21895 1.06344 1.19600 0.92731 0.77786 0.98786 1.21463 0.96239 0.93395 1.46491 0.91782 1.24932 0.98732 0.94989 0.94971 1.69932 1.36693 0.97841 1.47768 0.86507 0.84398 0.78495 0.78543 1.19578 1.20816 1.20752 1.21210 0.92079 0.97938 0.88797 1.21953 0.95963 1.01785 0.97154 1.22072 0.87906 0.97515 0.99406 1.61962 1.02767 1.59987 1.02453 1.22365 1.00342 0.97950 0.91655 1.22425 0.97913 0.97323 0.94958 0.85854 0.92408 0.92690 0.84255 0.84513 0.84866 0.82438 0.94396 0.93917 0.92459 0.89959 0.91064 0.92051 0.90732 0.90509 0.94816 0.95915 0.91636 0.91325 0.90904 0.91757 0.95767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 9.30 37.16 0.35 -3.12 16 2 C 0.08 1.65 2.06 -27.88 -0.06 1.59 16 3 H 0.11 2.36 5.57 -51.93 -0.29 2.07 16 4 O -0.28 -5.64 9.35 -38.12 -0.36 -5.99 16 5 C 0.33 5.68 7.45 -17.12 -0.13 5.55 16 6 C -0.20 -2.69 10.04 -39.28 -0.39 -3.08 16 7 C -0.04 -0.46 10.17 -39.31 -0.40 -0.86 16 8 C -0.22 -2.35 10.11 -39.43 -0.40 -2.75 16 9 C 0.14 1.85 11.18 -17.56 -0.20 1.66 16 10 N -0.53 -8.96 8.65 -13.33 -0.12 -9.08 16 11 C 0.52 11.45 6.97 -10.99 -0.08 11.37 16 12 O -0.56 -13.35 16.13 -13.82 -0.22 -13.57 16 13 N -0.59 -12.42 2.46 -175.06 -0.43 -12.86 16 14 C 0.23 5.34 4.68 -5.20 -0.02 5.32 16 15 C -0.54 -13.36 7.10 -34.44 -0.24 -13.60 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -23.62 13.29 55.43 0.74 -22.89 16 19 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.12 2.28 5.46 -4.04 -0.02 2.26 16 24 C -0.13 -2.12 5.46 -26.73 -0.15 -2.27 16 25 C 0.06 0.83 4.96 -3.83 -0.02 0.81 16 26 N -0.55 -7.27 5.02 -251.27 -1.26 -8.53 16 27 C 0.03 0.27 9.57 60.06 0.57 0.84 16 28 C 0.02 0.27 9.32 60.06 0.56 0.83 16 29 H 0.12 2.74 4.71 -51.93 -0.24 2.49 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.04 1.03 5.53 -51.93 -0.29 0.75 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.08 1.48 8.07 -51.93 -0.42 1.07 16 40 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 41 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 44 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 45 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 47 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 48 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 49 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 50 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 407.03 15.07 6.13 6.13 Total: -1.00 -30.01 407.03 -9.44 -39.45 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.18 Total: 6.17 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.72 Total: 6.16 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -1.07 Total: -53.35 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.58 Total: -19.56 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.01 -9.44 -39.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449804936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.436 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds