Wall clock time and date at job start Tue Mar 31 2020 19:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46936 * 2 1 4 4 O 1.42894 * 109.47249 * 240.00128 * 2 1 3 5 5 C 1.35681 * 117.00007 * 89.99726 * 4 2 1 6 6 C 1.38918 * 119.68251 * 179.72755 * 5 4 2 7 7 C 1.38376 * 119.11108 * 179.75274 * 6 5 4 8 8 C 1.38832 * 118.48499 * 0.51155 * 7 6 5 9 9 C 1.38044 * 119.28809 * 359.73429 * 8 7 6 10 10 N 1.31971 * 120.83527 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47019 * 119.99619 * 2 1 3 12 12 O 1.21283 * 119.99696 * 103.93951 * 11 2 1 13 13 N 1.34769 * 120.00188 * 283.93837 * 11 2 1 14 14 C 1.46494 * 120.00290 * 5.09192 * 13 11 2 15 15 C 1.50701 * 109.47387 * 95.75403 * 14 13 11 16 16 H 1.07999 * 119.99450 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00309 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99877 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00156 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47296 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46991 * 119.99818 * 19 17 15 22 22 H 1.48500 * 109.47692 * 240.00057 * 19 17 15 23 23 C 1.46505 * 119.99717 * 185.08961 * 13 11 2 24 24 C 1.53006 * 109.47025 * 90.00337 * 23 13 11 25 25 C 1.52994 * 109.47159 * 179.97438 * 24 23 13 26 26 N 1.46901 * 109.47398 * 179.97438 * 25 24 23 27 27 C 1.46892 * 111.00122 * 169.99564 * 26 25 24 28 28 C 1.46899 * 111.00021 * 293.95601 * 26 25 24 29 29 H 1.09003 * 109.47545 * 306.71409 * 1 2 3 30 30 H 1.08997 * 109.47271 * 66.71853 * 1 2 3 31 31 H 1.09005 * 109.47094 * 186.71305 * 1 2 3 32 32 H 1.08001 * 120.44811 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.75843 * 180.23885 * 7 6 5 34 34 H 1.08000 * 120.35677 * 179.70474 * 8 7 6 35 35 H 1.08000 * 119.58397 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.47186 * 215.75822 * 14 13 11 37 37 H 1.08998 * 109.46895 * 335.75276 * 14 13 11 38 38 H 0.96997 * 120.00043 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46844 * 209.99649 * 23 13 11 40 40 H 1.09000 * 109.47374 * 330.00027 * 23 13 11 41 41 H 1.09003 * 109.46709 * 299.99856 * 24 23 13 42 42 H 1.09000 * 109.47298 * 59.99643 * 24 23 13 43 43 H 1.08998 * 109.47176 * 300.00068 * 25 24 23 44 44 H 1.09000 * 109.47267 * 59.99673 * 25 24 23 45 45 H 1.09004 * 109.46872 * 60.00334 * 27 26 25 46 46 H 1.09002 * 109.47313 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47800 * 300.00507 * 27 26 25 48 48 H 1.09003 * 109.47397 * 59.99586 * 28 26 25 49 49 H 1.08991 * 109.47088 * 179.97438 * 28 26 25 50 50 H 1.08999 * 109.46813 * 299.99269 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2116 0.0830 -2.2741 6 6 2.6796 -0.5138 -3.4380 7 6 2.8799 0.2681 -4.5620 8 6 2.6138 1.6281 -4.4784 9 6 2.1557 2.1547 -3.2875 10 7 1.9697 1.3825 -2.2335 11 6 2.0323 -0.7103 1.2305 12 8 2.4730 -1.8369 1.1429 13 7 1.9919 -0.0938 2.4282 14 6 1.3586 1.2212 2.5542 15 6 -0.0660 1.0507 3.0154 16 1 -0.4600 0.0616 3.1969 17 6 -0.8662 2.1572 3.2055 18 7 -0.3862 3.3616 2.9850 19 14 -2.6321 1.9458 3.7765 20 1 -2.9258 0.5008 3.9524 21 1 -2.8218 2.6500 5.0701 22 1 -3.5525 2.5184 2.7615 23 6 2.5812 -0.7387 3.6043 24 6 4.0497 -0.3275 3.7292 25 6 4.6650 -1.0005 4.9577 26 7 6.0750 -0.6063 5.0773 27 6 6.6345 -1.0367 6.3655 28 6 6.8659 -1.1334 3.9573 29 1 -0.3634 0.6144 0.8238 30 1 -0.3633 0.4062 -0.9439 31 1 -0.3633 -1.0207 0.1201 32 1 2.8802 -1.5747 -3.4666 33 1 3.2392 -0.1689 -5.4819 34 1 2.7641 2.2673 -5.3359 35 1 1.9468 3.2120 -3.2173 36 1 1.9067 1.8202 3.2814 37 1 1.3697 1.7239 1.5871 38 1 -0.9492 4.1401 3.1184 39 1 2.0399 -0.4287 4.4981 40 1 2.5149 -1.8213 3.4965 41 1 4.5910 -0.6375 2.8353 42 1 4.1160 0.7551 3.8370 43 1 4.1235 -0.6902 5.8514 44 1 4.5986 -2.0832 4.8504 45 1 6.5669 -2.1217 6.4466 46 1 7.6794 -0.7326 6.4277 47 1 6.0727 -0.5760 7.1779 48 1 6.4722 -0.7428 3.0189 49 1 7.9055 -0.8264 4.0704 50 1 6.8067 -2.2218 3.9512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449804936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:17 Heat of formation + Delta-G solvation = -47.603962 kcal Electronic energy + Delta-G solvation = -29700.335476 eV Core-core repulsion = 25727.650573 eV Total energy + Delta-G solvation = -3972.684902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83612 -40.86660 -38.96321 -38.49181 -36.96401 -34.84556 -33.73270 -33.38237 -32.30120 -30.87424 -29.29299 -28.52206 -27.51348 -25.68481 -24.96474 -24.53424 -24.10368 -23.02200 -21.80480 -20.26630 -19.57085 -18.56157 -18.16548 -17.66953 -17.08017 -16.88142 -16.76099 -16.54830 -16.36049 -16.20482 -15.80926 -15.46112 -15.43713 -15.02245 -14.78245 -14.51897 -14.38783 -14.00465 -13.95602 -13.61919 -13.42800 -13.28922 -13.23067 -12.95435 -12.84059 -12.78127 -12.68947 -12.62187 -12.54576 -12.44213 -12.36677 -12.14951 -11.94876 -11.66285 -11.54940 -10.90485 -10.78674 -10.56972 -10.44968 -9.56878 -9.46502 -9.34643 -8.19282 -6.31944 0.22225 0.36989 1.41620 1.44871 1.48641 1.54715 1.64176 2.39289 2.54601 2.85579 3.02079 3.11248 3.33832 3.50602 3.91439 3.99560 4.03163 4.06840 4.08921 4.14854 4.19869 4.25778 4.37259 4.40074 4.42218 4.47721 4.58550 4.64296 4.70807 4.71895 4.77969 4.79625 4.82947 4.88554 4.96034 5.00232 5.07577 5.09865 5.15650 5.24469 5.28412 5.34152 5.55898 5.65690 5.77669 6.01570 6.03829 6.09679 6.22812 6.45360 6.77682 6.93652 7.15303 7.38105 8.86962 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006470 B = 0.004455 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4326.723884 B = 6284.252485 C = 9622.089800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 H 0.101 0.899 4 O -0.305 6.305 5 C 0.288 3.712 6 C -0.202 4.202 7 C -0.033 4.033 8 C -0.201 4.201 9 C 0.121 3.879 10 N -0.570 5.570 11 C 0.516 3.484 12 O -0.580 6.580 13 N -0.588 5.588 14 C 0.248 3.752 15 C -0.538 4.538 16 H 0.056 0.944 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.121 3.879 24 C -0.115 4.115 25 C 0.067 3.933 26 N -0.564 5.564 27 C 0.025 3.975 28 C 0.023 3.977 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.148 0.852 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.024 0.976 37 H 0.030 0.970 38 H 0.268 0.732 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.037 0.963 45 H 0.029 0.971 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 -3.916 -7.964 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.119 0.881 4 O -0.212 6.212 5 C 0.110 3.890 6 C -0.223 4.223 7 C -0.059 4.059 8 C -0.220 4.220 9 C -0.034 4.034 10 N -0.294 5.294 11 C 0.303 3.697 12 O -0.462 6.462 13 N -0.318 5.318 14 C 0.127 3.873 15 C -0.577 4.577 16 H 0.075 0.925 17 C -0.173 4.173 18 N -0.553 5.553 19 Si 0.777 3.223 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.002 4.002 24 C -0.154 4.154 25 C -0.062 4.062 26 N -0.289 5.289 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.199 0.801 34 H 0.193 0.807 35 H 0.195 0.805 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.640 -3.712 -7.149 12.563 hybrid contribution -0.905 -0.862 -0.103 1.254 sum 8.735 -4.573 -7.252 12.240 Atomic orbital electron populations 1.22224 0.91690 1.03000 1.04679 1.21864 0.96517 0.96651 0.81785 0.88099 1.86276 1.80451 1.35972 1.18517 1.20349 0.93176 0.88012 0.87466 1.21364 1.06551 1.02977 0.91395 1.21886 0.92872 0.93358 0.97738 1.22405 1.03046 0.96616 0.99983 1.23012 0.92693 1.00110 0.87565 1.67283 1.22362 1.05125 1.34595 1.20362 0.78130 0.85889 0.85300 1.90576 1.49344 1.19561 1.86682 1.48091 1.55323 1.21253 1.07117 1.19257 0.92142 0.78371 0.97493 1.21536 0.96871 0.93037 1.46209 0.92532 1.25567 1.02051 0.94663 0.95018 1.70018 1.38038 0.98483 1.48733 0.85600 0.80235 0.78330 0.78126 1.19448 1.20384 1.20436 1.21365 0.93320 0.97592 0.87897 1.21767 0.94488 1.01053 0.98057 1.21956 0.88736 0.97296 0.98206 1.61947 1.02376 1.60647 1.03891 1.22428 1.01104 0.98446 0.90269 1.22421 0.98685 0.97409 0.93989 0.87950 0.91548 0.92796 0.83438 0.80148 0.80681 0.80497 0.95772 0.95183 0.92256 0.89527 0.91261 0.93436 0.92003 0.89571 0.94496 0.95241 0.90192 0.90782 0.92654 0.89893 0.95458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.64 9.30 71.98 0.67 -5.97 16 2 C 0.09 3.94 2.06 29.85 0.06 4.00 16 3 H 0.10 4.53 5.57 -2.38 -0.01 4.51 16 4 O -0.30 -12.65 9.35 -71.47 -0.67 -13.32 16 5 C 0.29 10.08 7.45 84.79 0.63 10.72 16 6 C -0.20 -5.33 10.04 22.47 0.23 -5.10 16 7 C -0.03 -0.60 10.17 22.44 0.23 -0.37 16 8 C -0.20 -3.51 10.11 22.37 0.23 -3.29 16 9 C 0.12 2.98 11.18 84.63 0.95 3.92 16 10 N -0.57 -19.43 8.65 -308.95 -2.67 -22.10 16 11 C 0.52 23.71 6.97 87.66 0.61 24.32 16 12 O -0.58 -28.77 16.13 15.49 0.25 -28.52 16 13 N -0.59 -25.90 2.46 -826.16 -2.03 -27.93 16 14 C 0.25 11.95 4.68 85.63 0.40 12.35 16 15 C -0.54 -27.35 7.10 25.60 0.18 -27.17 16 16 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 17 C 0.03 1.45 5.46 84.65 0.46 1.91 16 18 N -0.91 -49.50 13.29 21.45 0.28 -49.21 16 19 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 23 C 0.12 4.61 5.46 86.38 0.47 5.08 16 24 C -0.11 -3.87 5.46 30.59 0.17 -3.71 16 25 C 0.07 1.83 4.96 86.30 0.43 2.26 16 26 N -0.56 -14.51 5.02 -948.89 -4.76 -19.27 16 27 C 0.03 0.49 9.57 127.69 1.22 1.71 16 28 C 0.02 0.55 9.32 127.69 1.19 1.74 16 29 H 0.10 4.73 4.71 -2.39 -0.01 4.71 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.05 2.20 8.14 -2.38 -0.02 2.19 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.02 1.23 8.11 -2.39 -0.02 1.21 16 37 H 0.03 1.54 5.53 -2.39 -0.01 1.52 16 38 H 0.27 13.77 8.31 -92.71 -0.77 12.99 16 39 H 0.09 3.19 8.07 -2.39 -0.02 3.17 16 40 H 0.07 2.66 7.36 -2.39 -0.02 2.65 16 41 H 0.05 1.73 6.55 -2.39 -0.02 1.71 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.09 2.20 8.06 -2.39 -0.02 2.18 16 44 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 45 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.08 1.32 8.12 -2.39 -0.02 1.31 16 47 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 48 H 0.05 1.50 6.47 -2.39 -0.02 1.48 16 49 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 50 H 0.03 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -66.83 407.03 1.47 -65.36 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.91 Total: 29.35 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 8.12 Total: 22.43 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -9.18 Total: -118.51 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.42 Total: -41.84 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -66.83 1.47 -65.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449804936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.758 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds