Wall clock time and date at job start Tue Mar 31 2020 19:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46678 * 2 1 4 4 O 1.42895 * 109.46815 * 119.99556 * 2 1 3 5 5 C 1.35676 * 117.00343 * 270.00228 * 4 2 1 6 6 C 1.38923 * 119.68752 * 179.97438 * 5 4 2 7 7 C 1.38375 * 119.11168 * 179.74229 * 6 5 4 8 8 C 1.38835 * 118.48250 * 0.54138 * 7 6 5 9 9 C 1.38041 * 119.29115 * 359.46018 * 8 7 6 10 10 N 1.31962 * 120.83332 * 0.27314 * 9 8 7 11 11 C 1.50698 * 109.47179 * 239.99814 * 2 1 3 12 12 O 1.21283 * 119.99848 * 248.32459 * 11 2 1 13 13 N 1.34773 * 119.99875 * 68.33109 * 11 2 1 14 14 C 1.46497 * 120.00301 * 4.61883 * 13 11 2 15 15 C 1.50704 * 109.47091 * 87.47345 * 14 13 11 16 16 H 1.07998 * 119.99574 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99899 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99749 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00437 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47403 * 89.99848 * 19 17 15 21 21 H 1.48498 * 109.47073 * 210.00206 * 19 17 15 22 22 H 1.48507 * 109.46925 * 329.99891 * 19 17 15 23 23 C 1.46500 * 120.00022 * 184.62951 * 13 11 2 24 24 C 1.53001 * 109.47591 * 89.99150 * 23 13 11 25 25 C 1.52996 * 109.47154 * 180.02562 * 24 23 13 26 26 N 1.46905 * 109.47058 * 180.02562 * 25 24 23 27 27 C 1.46903 * 110.99966 * 170.00001 * 26 25 24 28 28 C 1.46904 * 111.00142 * 293.95310 * 26 25 24 29 29 H 1.09001 * 109.47473 * 307.74763 * 1 2 3 30 30 H 1.09005 * 109.46829 * 67.74403 * 1 2 3 31 31 H 1.08998 * 109.46841 * 187.74618 * 1 2 3 32 32 H 1.07998 * 120.44143 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.76227 * 180.29412 * 7 6 5 34 34 H 1.08003 * 120.34971 * 179.72742 * 8 7 6 35 35 H 1.08004 * 119.58438 * 180.25620 * 9 8 7 36 36 H 1.09004 * 109.47442 * 207.47246 * 14 13 11 37 37 H 1.08996 * 109.47389 * 327.47263 * 14 13 11 38 38 H 0.97004 * 119.99907 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47295 * 209.99826 * 23 13 11 40 40 H 1.09003 * 109.46686 * 329.99442 * 23 13 11 41 41 H 1.08995 * 109.47048 * 300.00312 * 24 23 13 42 42 H 1.08994 * 109.47037 * 60.00139 * 24 23 13 43 43 H 1.08995 * 109.47141 * 299.99940 * 25 24 23 44 44 H 1.09003 * 109.47162 * 60.00268 * 25 24 23 45 45 H 1.08996 * 109.46974 * 59.99985 * 27 26 25 46 46 H 1.09003 * 109.46939 * 180.02562 * 27 26 25 47 47 H 1.08998 * 109.46930 * 300.00166 * 27 26 25 48 48 H 1.09003 * 109.46663 * 59.99599 * 28 26 25 49 49 H 1.08994 * 109.47126 * 179.97438 * 28 26 25 50 50 H 1.08991 * 109.46922 * 300.00353 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2115 0.0830 2.2742 6 6 2.6735 -0.5148 3.4400 7 6 2.8839 0.2690 4.5608 8 6 2.6125 1.6281 4.4788 9 6 2.1552 2.1547 3.2875 10 7 1.9695 1.3825 2.2336 11 6 2.0324 -0.7104 -1.2304 12 8 2.6003 -1.7769 -1.1255 13 7 1.8507 -0.1606 -2.4474 14 6 1.2563 1.1730 -2.5674 15 6 2.3401 2.2161 -2.4760 16 1 3.3688 1.9157 -2.3424 17 6 2.0184 3.5539 -2.5640 18 7 2.9644 4.4642 -2.4848 19 14 0.2393 4.0736 -2.7958 20 1 -0.3982 4.2628 -1.4681 21 1 0.1910 5.3493 -3.5544 22 1 -0.4895 3.0217 -3.5494 23 6 2.2474 -0.8966 -3.6504 24 6 1.0719 -1.7447 -4.1403 25 6 1.4865 -2.5137 -5.3963 26 7 0.3578 -3.3276 -5.8670 27 6 0.6342 -3.8935 -7.1942 28 6 0.0323 -4.3854 -4.9010 29 1 -0.3634 0.6291 0.8126 30 1 -0.3633 0.3892 -0.9512 31 1 -0.3633 -1.0183 0.1385 32 1 2.8695 -1.5764 3.4700 33 1 3.2470 -0.1672 5.4796 34 1 2.7616 2.2671 5.3366 35 1 1.9465 3.2121 3.2172 36 1 0.7488 1.2596 -3.5282 37 1 0.5376 1.3243 -1.7620 38 1 2.7381 5.4055 -2.5463 39 1 2.5360 -0.1909 -4.4294 40 1 3.0914 -1.5457 -3.4173 41 1 0.7834 -2.4503 -3.3613 42 1 0.2279 -1.0956 -4.3734 43 1 1.7753 -1.8084 -6.1755 44 1 2.3305 -3.1629 -5.1628 45 1 1.5219 -4.5238 -7.1427 46 1 -0.2177 -4.4910 -7.5190 47 1 0.8032 -3.0853 -7.9058 48 1 -0.2361 -3.9347 -3.9455 49 1 -0.8068 -4.9724 -5.2740 50 1 0.8983 -5.0334 -4.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449804937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:20 Heat of formation + Delta-G solvation = -19.924843 kcal Electronic energy + Delta-G solvation = -29786.968348 eV Core-core repulsion = 25815.483703 eV Total energy + Delta-G solvation = -3971.484646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53871 -39.41950 -37.80456 -37.27909 -35.30694 -33.02599 -32.38544 -32.20366 -31.05059 -29.73924 -28.03664 -27.64473 -26.15016 -24.49835 -23.48827 -22.95357 -22.64670 -21.70051 -20.69936 -18.74324 -18.18070 -17.04000 -16.71364 -16.28929 -15.78452 -15.76616 -15.47946 -15.39641 -14.97663 -14.88090 -14.39875 -14.30825 -14.12697 -13.76774 -13.50110 -13.14091 -12.92178 -12.87477 -12.51093 -12.46472 -12.32120 -12.15596 -11.88127 -11.84123 -11.75795 -11.59233 -11.43614 -11.36403 -11.20137 -10.82256 -10.69236 -10.57480 -10.31512 -10.21089 -9.83400 -9.60423 -9.37233 -9.04294 -8.70123 -8.40476 -8.32146 -7.81641 -6.20577 -4.22544 1.28985 1.40298 2.96624 3.19052 3.22352 3.25865 3.28294 3.84066 3.94582 4.08871 4.27513 4.48733 4.90561 4.96139 5.07560 5.09672 5.12997 5.14391 5.22566 5.23824 5.30159 5.33093 5.40625 5.50629 5.58338 5.60931 5.64798 5.72441 5.74997 5.81784 5.84533 5.92933 5.94552 6.00914 6.10401 6.16447 6.25505 6.26188 6.38391 6.45825 6.54402 6.58430 6.70260 6.98047 7.00334 7.26220 7.43045 7.51375 8.03708 8.07239 8.38013 8.78866 8.87715 9.38099 10.92045 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.003878 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.017912 B = 7218.404486 C = 9556.694402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 H 0.133 0.867 4 O -0.281 6.281 5 C 0.329 3.671 6 C -0.196 4.196 7 C -0.044 4.044 8 C -0.222 4.222 9 C 0.145 3.855 10 N -0.530 5.530 11 C 0.525 3.475 12 O -0.553 6.553 13 N -0.584 5.584 14 C 0.196 3.804 15 C -0.543 4.543 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.888 5.888 19 Si 0.867 3.133 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.122 3.878 24 C -0.130 4.130 25 C 0.058 3.942 26 N -0.548 5.548 27 C 0.025 3.975 28 C 0.022 3.978 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -10.196 4.795 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.011 3.989 3 H 0.151 0.849 4 O -0.186 6.186 5 C 0.150 3.850 6 C -0.217 4.217 7 C -0.070 4.070 8 C -0.243 4.243 9 C -0.011 4.011 10 N -0.254 5.254 11 C 0.312 3.688 12 O -0.432 6.432 13 N -0.315 5.315 14 C 0.075 3.925 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.525 5.525 19 Si 0.693 3.307 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.001 4.001 24 C -0.169 4.169 25 C -0.070 4.070 26 N -0.272 5.272 27 C -0.123 4.123 28 C -0.127 4.127 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.677 -10.170 3.935 12.294 hybrid contribution 0.133 -0.066 0.590 0.608 sum -5.544 -10.237 4.525 12.490 Atomic orbital electron populations 1.22307 0.93208 1.02722 1.04252 1.22179 0.95255 0.99573 0.81880 0.84917 1.86312 1.79591 1.34804 1.17926 1.19973 0.90466 0.87438 0.87133 1.21042 1.06964 1.01987 0.91661 1.21337 0.94636 0.93489 0.97495 1.21936 1.06178 0.96161 0.99975 1.22484 0.92147 0.99346 0.87118 1.67389 1.21207 1.04602 1.32168 1.19982 0.79251 0.85067 0.84471 1.90620 1.43070 1.22949 1.86525 1.47721 1.61108 1.18503 1.04155 1.20138 0.94964 0.79273 0.98148 1.21339 0.95047 0.89829 1.51897 0.90439 1.24836 0.97084 0.96334 0.94106 1.69893 1.32520 1.01093 1.49044 0.86988 0.85654 0.78904 0.79157 1.19575 1.20857 1.18738 1.21259 0.96479 0.95217 0.87171 1.21971 0.99584 0.99002 0.96372 1.22077 0.91118 0.96197 0.97624 1.61982 1.39598 1.22804 1.02823 1.22369 0.99767 0.99282 0.90930 1.22428 0.99872 0.93468 0.96883 0.91149 0.89412 0.91916 0.84290 0.84511 0.84848 0.82415 0.94390 0.94308 0.92368 0.89916 0.90694 0.91818 0.90899 0.90487 0.94649 0.95827 0.91613 0.91329 0.90906 0.91746 0.95700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.10 37.16 0.34 -2.51 16 2 C 0.07 1.42 2.08 -27.88 -0.06 1.36 16 3 H 0.13 2.98 6.21 -51.93 -0.32 2.66 16 4 O -0.28 -5.57 9.31 -38.50 -0.36 -5.93 16 5 C 0.33 5.82 7.45 -17.12 -0.13 5.69 16 6 C -0.20 -2.77 10.04 -39.28 -0.39 -3.16 16 7 C -0.04 -0.50 10.17 -39.31 -0.40 -0.90 16 8 C -0.22 -2.53 10.11 -39.43 -0.40 -2.93 16 9 C 0.15 2.05 11.18 -17.57 -0.20 1.85 16 10 N -0.53 -9.42 8.65 -13.33 -0.12 -9.54 16 11 C 0.53 11.37 7.02 -10.99 -0.08 11.29 16 12 O -0.55 -13.04 16.08 -14.22 -0.23 -13.27 16 13 N -0.58 -12.03 2.46 -175.06 -0.43 -12.46 16 14 C 0.20 4.28 3.67 -5.19 -0.02 4.26 16 15 C -0.54 -14.32 9.54 -34.44 -0.33 -14.65 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 19 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 23 C 0.12 2.19 5.43 -4.04 -0.02 2.16 16 24 C -0.13 -1.99 5.46 -26.73 -0.15 -2.13 16 25 C 0.06 0.76 4.96 -3.82 -0.02 0.75 16 26 N -0.55 -6.83 5.02 -251.26 -1.26 -8.09 16 27 C 0.02 0.25 9.57 60.07 0.57 0.82 16 28 C 0.02 0.25 9.32 60.07 0.56 0.81 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.46 5.48 -51.93 -0.28 1.18 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.04 0.81 7.11 -51.93 -0.37 0.44 16 37 H 0.04 0.83 3.71 -51.93 -0.19 0.63 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 40 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 41 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 44 H 0.04 0.47 8.12 -51.93 -0.42 0.04 16 45 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 47 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 49 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 50 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -32.29 405.07 -9.14 -41.43 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.15 Total: 6.95 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.81 Total: 4.80 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.03 Total: -55.09 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.59 Total: -19.20 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.29 -9.14 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449804937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.506 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds