Wall clock time and date at job start Tue Mar 31 2020 19:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47127 * 2 1 4 4 C 1.38478 * 119.99705 * 270.00112 * 3 2 1 5 5 C 1.39405 * 119.52859 * 192.37705 * 4 3 2 6 6 C 1.36845 * 119.38528 * 179.97438 * 5 4 3 7 7 C 1.40401 * 118.48815 * 0.02562 * 6 5 4 8 8 C 1.47435 * 120.48357 * 179.97438 * 7 6 5 9 9 O 1.21630 * 120.00141 * 146.52999 * 8 7 6 10 10 N 1.34781 * 119.99752 * 326.53045 * 8 7 6 11 11 C 1.36912 * 120.00225 * 4.50881 * 10 8 7 12 12 H 1.07995 * 119.99769 * 321.29895 * 11 10 8 13 13 C 1.39013 * 119.99966 * 141.29622 * 11 10 8 14 14 N 1.31382 * 120.00053 * 341.93428 * 13 11 10 15 15 Si 1.86803 * 119.99787 * 161.93057 * 13 11 10 16 16 H 1.48501 * 109.46671 * 60.00230 * 15 13 11 17 17 H 1.48497 * 109.47092 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47342 * 300.00539 * 15 13 11 19 19 C 1.46496 * 119.99555 * 184.50856 * 10 8 7 20 20 C 1.53003 * 109.47277 * 84.56253 * 19 10 8 21 21 O 1.42899 * 109.47293 * 64.99678 * 20 19 10 22 22 C 1.42900 * 114.00051 * 180.02562 * 21 20 19 23 23 C 1.39625 * 119.03641 * 359.97438 * 7 6 5 24 24 N 1.31677 * 120.51276 * 359.75443 * 23 7 6 25 25 C 1.46494 * 120.00347 * 89.99846 * 3 2 1 26 26 C 1.53001 * 109.47000 * 58.39499 * 25 3 2 27 27 C 1.53004 * 109.47056 * 298.40103 * 25 3 2 28 28 H 1.08994 * 109.47092 * 300.00150 * 1 2 3 29 29 H 1.08999 * 109.47343 * 60.00551 * 1 2 3 30 30 H 1.09008 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47205 * 240.00113 * 2 1 3 32 32 H 1.08995 * 109.47505 * 120.00176 * 2 1 3 33 33 H 1.08002 * 120.30901 * 359.95012 * 5 4 3 34 34 H 1.08004 * 120.75462 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99753 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47189 * 204.56113 * 19 10 8 37 37 H 1.09001 * 109.47507 * 324.55908 * 19 10 8 38 38 H 1.08998 * 109.47244 * 184.99822 * 20 19 10 39 39 H 1.09003 * 109.46924 * 304.99254 * 20 19 10 40 40 H 1.08996 * 109.46869 * 179.97438 * 22 21 20 41 41 H 1.08991 * 109.47032 * 300.00189 * 22 21 20 42 42 H 1.09006 * 109.46702 * 59.99763 * 22 21 20 43 43 H 1.08000 * 119.74708 * 179.97438 * 23 7 6 44 44 H 1.08993 * 109.47818 * 178.39534 * 25 3 2 45 45 H 1.09003 * 109.47561 * 294.08699 * 26 25 3 46 46 H 1.09000 * 109.47487 * 54.08546 * 26 25 3 47 47 H 1.08996 * 109.47450 * 174.08965 * 26 25 3 48 48 H 1.09002 * 109.46924 * 186.17361 * 27 25 3 49 49 H 1.08996 * 109.46603 * 306.16860 * 27 25 3 50 50 H 1.09001 * 109.47436 * 66.16778 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2491 2.0340 -1.1993 5 6 2.9507 3.2386 -1.2020 6 6 3.1776 3.8809 -2.3889 7 6 2.6905 3.2979 -3.5696 8 6 2.9093 3.9524 -4.8724 9 8 3.0681 3.2786 -5.8725 10 7 2.9335 5.2975 -4.9552 11 6 2.8473 6.0550 -3.8180 12 1 2.1890 5.7532 -3.0168 13 6 3.6072 7.2125 -3.6947 14 7 4.6481 7.4011 -4.4739 15 14 3.1483 8.4997 -2.4211 16 1 3.1949 7.8939 -1.0661 17 1 4.1086 9.6302 -2.4917 18 1 1.7764 8.9985 -2.6935 19 6 3.0519 5.9488 -6.2620 20 6 1.6659 6.0714 -6.8983 21 8 0.8562 6.9473 -6.1113 22 6 -0.4661 7.1311 -6.6209 23 6 1.9958 2.0892 -3.4920 24 7 1.8041 1.5016 -2.3293 25 6 2.2625 2.0719 1.2686 26 6 3.2875 1.2856 2.0883 27 6 0.9530 2.1751 2.0534 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3116 3.6612 -0.2759 34 1 3.7190 4.8150 -2.4167 35 1 5.1781 8.2091 -4.3881 36 1 3.4826 6.9421 -6.1353 37 1 3.6968 5.3529 -6.9080 38 1 1.7632 6.4744 -7.9064 39 1 1.1987 5.0876 -6.9439 40 1 -1.0164 7.8081 -5.9675 41 1 -0.4134 7.5558 -7.6233 42 1 -0.9773 6.1691 -6.6603 43 1 1.6157 1.6308 -4.3931 44 1 2.6467 3.0723 1.0697 45 1 2.8620 0.3244 2.3768 46 1 4.1831 1.1212 1.4891 47 1 3.5479 1.8508 2.9832 48 1 1.1104 2.7831 2.9443 49 1 0.1901 2.6382 1.4276 50 1 0.6259 1.1778 2.3471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457183049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:01 Heat of formation + Delta-G solvation = -35.959203 kcal Electronic energy + Delta-G solvation = -30347.666651 eV Core-core repulsion = 26375.486703 eV Total energy + Delta-G solvation = -3972.179948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56215 -40.29759 -38.73056 -38.23259 -36.65668 -34.14926 -33.50966 -32.96317 -32.68376 -30.84839 -29.33889 -28.06515 -27.32380 -26.69049 -25.10936 -24.83543 -23.40865 -22.91209 -21.32521 -20.70981 -19.47745 -18.54851 -18.02059 -17.41272 -17.13837 -16.77277 -16.41815 -16.08771 -16.00683 -15.76095 -15.67361 -15.48384 -15.02553 -14.90005 -14.56267 -14.47496 -14.04769 -13.95330 -13.68911 -13.53840 -13.42362 -13.28933 -13.10978 -12.92663 -12.85544 -12.78427 -12.57003 -12.51961 -12.43429 -12.13074 -12.09198 -11.81447 -11.68663 -11.57879 -10.99092 -10.83931 -10.61906 -10.54494 -10.51866 -10.14733 -9.41037 -8.45115 -8.22816 -5.94714 0.17885 0.55559 1.45591 1.52602 1.59191 1.97295 2.15195 2.36418 2.91037 3.00996 3.03499 3.32558 3.56260 3.90373 4.06170 4.17586 4.19380 4.21213 4.25629 4.29283 4.33921 4.45269 4.51490 4.52722 4.53799 4.60428 4.60885 4.63155 4.77129 4.77586 4.80607 4.85192 4.88584 4.92091 5.01875 5.02531 5.12032 5.24406 5.33096 5.37829 5.41311 5.46537 5.50236 5.55889 5.70142 6.01678 6.17303 6.39936 6.46227 6.48153 7.16812 7.19280 7.60776 8.02970 8.79588 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.003800 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.588340 B = 7365.822194 C = 8326.962766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 N -0.598 5.598 4 C 0.406 3.594 5 C -0.251 4.251 6 C 0.005 3.995 7 C -0.233 4.233 8 C 0.506 3.494 9 O -0.639 6.639 10 N -0.430 5.430 11 C -0.326 4.326 12 H 0.089 0.911 13 C 0.012 3.988 14 N -0.892 5.892 15 Si 0.970 3.030 16 H -0.256 1.256 17 H -0.283 1.283 18 H -0.276 1.276 19 C 0.114 3.886 20 C 0.063 3.937 21 O -0.397 6.397 22 C 0.025 3.975 23 C 0.181 3.819 24 N -0.554 5.554 25 C 0.132 3.868 26 C -0.156 4.156 27 C -0.157 4.157 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.272 0.728 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.153 0.847 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.042 0.958 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 -6.737 13.029 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.310 5.310 4 C 0.170 3.830 5 C -0.275 4.275 6 C -0.021 4.021 7 C -0.241 4.241 8 C 0.297 3.703 9 O -0.529 6.529 10 N -0.146 5.146 11 C -0.454 4.454 12 H 0.107 0.893 13 C -0.191 4.191 14 N -0.530 5.530 15 Si 0.794 3.206 16 H -0.180 1.180 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.009 4.009 20 C -0.014 4.014 21 O -0.316 6.316 22 C -0.071 4.071 23 C 0.023 3.977 24 N -0.272 5.272 25 C 0.029 3.971 26 C -0.214 4.214 27 C -0.215 4.215 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.170 0.830 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.062 0.938 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.080 -7.656 12.891 16.580 hybrid contribution 0.224 1.495 -0.582 1.619 sum -6.856 -6.161 12.309 15.378 Atomic orbital electron populations 1.22229 0.96061 1.02331 1.01638 1.21343 0.94435 0.81312 1.02549 1.46709 1.69298 1.13637 1.01405 1.18725 0.88579 0.88811 0.86893 1.21380 1.08044 0.98335 0.99709 1.21989 0.91966 0.97623 0.90532 1.20527 1.09508 0.99544 0.94526 1.18547 0.80529 0.82945 0.88258 1.90555 1.58143 1.65085 1.39125 1.43342 1.61518 1.03223 1.06496 1.19436 1.23219 1.06498 0.96268 0.89332 1.25969 0.93373 1.00035 0.99748 1.69960 1.14798 1.27523 1.40682 0.85342 0.77936 0.78101 0.79232 1.17991 1.20871 1.20166 1.21401 0.94293 1.00384 0.84865 1.22833 0.92172 0.92239 0.94170 1.88059 1.24686 1.66731 1.52095 1.22879 0.83621 1.00751 0.99840 1.22408 0.91163 0.89531 0.94632 1.67308 1.26221 1.36051 0.97652 1.21376 0.96776 0.96907 0.82005 1.22140 0.98009 1.01181 1.00077 1.22253 0.96085 1.03058 1.00126 0.91565 0.94725 0.90739 0.92123 0.88685 0.82859 0.83124 0.91877 0.88369 0.92431 0.91312 0.95214 0.88886 0.92818 0.94412 0.82995 0.89320 0.91199 0.93247 0.89592 0.89791 0.93848 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.98 71.98 0.72 -2.55 16 2 C 0.13 2.65 5.55 86.38 0.48 3.13 16 3 N -0.60 -14.70 2.50 -680.00 -1.70 -16.40 16 4 C 0.41 13.42 7.30 133.25 0.97 14.39 16 5 C -0.25 -8.58 9.21 22.22 0.20 -8.37 16 6 C 0.00 0.19 7.75 22.47 0.17 0.36 16 7 C -0.23 -10.70 5.51 -19.99 -0.11 -10.81 16 8 C 0.51 26.60 7.36 86.67 0.64 27.24 16 9 O -0.64 -36.04 16.44 -4.13 -0.07 -36.11 16 10 N -0.43 -22.45 2.48 -639.24 -1.58 -24.04 16 11 C -0.33 -16.57 6.06 84.09 0.51 -16.06 16 12 H 0.09 4.44 6.07 -2.91 -0.02 4.43 16 13 C 0.01 0.58 4.98 84.95 0.42 1.00 16 14 N -0.89 -46.96 11.42 21.67 0.25 -46.71 16 15 Si 0.97 39.60 29.59 68.60 2.03 41.63 16 16 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 17 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 C 0.11 5.67 5.31 86.38 0.46 6.13 16 20 C 0.06 2.69 6.24 71.98 0.45 3.14 16 21 O -0.40 -16.96 10.44 -148.98 -1.55 -18.52 16 22 C 0.03 0.79 11.01 113.37 1.25 2.04 16 23 C 0.18 7.51 10.78 85.05 0.92 8.43 16 24 N -0.55 -20.55 9.25 -192.25 -1.78 -22.32 16 25 C 0.13 2.43 3.15 44.99 0.14 2.57 16 26 C -0.16 -2.18 9.00 71.98 0.65 -1.53 16 27 C -0.16 -2.37 7.97 71.98 0.57 -1.79 16 28 H 0.07 1.16 5.51 -2.39 -0.01 1.15 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 32 H 0.10 1.46 6.47 -2.39 -0.02 1.44 16 33 H 0.15 4.29 5.88 -2.91 -0.02 4.27 16 34 H 0.15 6.80 5.59 -2.91 -0.02 6.78 16 35 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 36 H 0.10 5.17 5.55 -2.39 -0.01 5.15 16 37 H 0.06 2.93 7.53 -2.39 -0.02 2.91 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.15 6.18 7.98 -2.91 -0.02 6.15 16 44 H 0.09 1.75 5.37 -2.39 -0.01 1.74 16 45 H 0.07 0.82 6.88 -2.39 -0.02 0.80 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.04 0.82 8.06 -2.39 -0.02 0.80 16 50 H 0.07 0.92 6.66 -2.39 -0.02 0.90 16 Total: -1.00 -66.32 395.43 4.98 -61.35 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.94 Total: 33.81 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 8.45 Total: 27.32 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.81 Total: -109.48 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -1.62 Total: -54.63 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -66.32 4.98 -61.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.386 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds