Wall clock time and date at job start Tue Mar 31 2020 19:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.47135 * 300.00342 * 15 13 12 17 17 C 1.53005 * 109.46725 * 60.00029 * 15 13 12 18 18 C 1.52997 * 109.47037 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46947 * 299.99799 * 18 17 15 20 20 H 1.08996 * 109.46925 * 300.00039 * 19 18 17 21 21 C 1.50701 * 109.46955 * 179.97438 * 19 18 17 22 22 O 1.21283 * 120.00044 * 239.99791 * 21 19 18 23 23 N 1.34777 * 120.00131 * 60.00037 * 21 19 18 24 24 C 1.46500 * 120.00270 * 179.97438 * 23 21 19 25 25 H 1.09004 * 109.46983 * 35.00279 * 24 23 21 26 26 C 1.52998 * 109.47286 * 275.00406 * 24 23 21 27 27 C 1.52994 * 109.47255 * 154.99932 * 24 23 21 28 28 C 1.47199 * 109.47432 * 295.00485 * 27 24 23 29 29 N 9.51362 * 107.13069 * 70.17157 * 5 1 2 30 30 C 1.52999 * 109.46803 * 60.00147 * 19 18 17 31 31 C 1.52997 * 109.47273 * 179.97438 * 15 13 12 32 32 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 35 35 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 36 36 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 37 37 H 1.08997 * 109.46918 * 300.00281 * 17 15 13 38 38 H 1.08996 * 109.47059 * 60.00266 * 17 15 13 39 39 H 1.09006 * 109.47443 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47340 * 59.99584 * 18 17 15 41 41 H 0.97005 * 119.99528 * 0.02562 * 23 21 19 42 42 H 1.09003 * 109.47514 * 59.99758 * 26 24 23 43 43 H 1.08996 * 109.47045 * 179.97438 * 26 24 23 44 44 H 1.09004 * 109.47006 * 299.99859 * 26 24 23 45 45 H 1.09007 * 109.47141 * 55.00266 * 27 24 23 46 46 H 1.09004 * 109.47280 * 175.00059 * 27 24 23 47 47 H 1.09006 * 109.46801 * 179.97438 * 30 19 18 48 48 H 1.08996 * 109.47469 * 60.00225 * 30 19 18 49 49 H 1.08996 * 109.47573 * 300.00384 * 31 15 13 50 50 H 1.08998 * 109.47067 * 60.00308 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 1.9762 -1.5508 3.8325 17 6 4.0515 -1.2798 3.3221 18 6 4.5608 -2.0017 4.5711 19 6 4.6123 -1.0190 5.7428 20 1 5.2852 -0.1972 5.4983 21 6 5.1134 -1.7303 6.9733 22 8 4.4174 -1.7902 7.9647 23 7 6.3350 -2.2997 6.9720 24 6 6.8223 -2.9907 8.1684 25 1 5.9887 -3.4846 8.6676 26 6 7.4578 -1.9755 9.1204 27 6 7.8659 -4.0343 7.7651 28 6 7.2261 -5.0771 6.9465 29 7 6.7376 -5.8783 6.3132 30 6 3.2098 -0.4682 6.0083 31 6 2.7011 0.2543 4.7587 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 0.7093 1.1619 -3.4844 36 1 2.2491 -1.6318 1.1525 37 1 4.0147 -1.9801 2.4876 38 1 4.7243 -0.4580 3.0773 39 1 5.5598 -2.3946 4.3818 40 1 3.8879 -2.8236 4.8156 41 1 6.8917 -2.2514 6.1791 42 1 6.7143 -1.2319 9.4078 43 1 7.8199 -2.4895 10.0107 44 1 8.2914 -1.4815 8.6211 45 1 8.6563 -3.5537 7.1884 46 1 8.2928 -4.4861 8.6605 47 1 3.2464 0.2316 6.8433 48 1 2.5369 -1.2900 6.2528 49 1 3.3741 1.0759 4.5137 50 1 1.7022 0.6471 4.9480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000477647809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:18 Heat of formation + Delta-G solvation = -84.696150 kcal Electronic energy + Delta-G solvation = -28917.970839 eV Core-core repulsion = 24943.677498 eV Total energy + Delta-G solvation = -3974.293340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67610 -39.36493 -37.85084 -36.96879 -35.86441 -34.75530 -32.63403 -32.36549 -31.05469 -30.61117 -28.77875 -28.60183 -25.26551 -24.79124 -22.77389 -22.36310 -21.35533 -20.58720 -19.83654 -19.22649 -18.41141 -17.35226 -17.13180 -16.84433 -15.76908 -15.60066 -15.24638 -14.93887 -14.67854 -14.50890 -14.43214 -14.10765 -14.09959 -13.80297 -13.51304 -13.24581 -12.90412 -12.84830 -12.73834 -12.47065 -12.29709 -12.27930 -12.22080 -12.13170 -11.70284 -11.54785 -11.42110 -11.26495 -11.14216 -11.03199 -10.93873 -10.70649 -10.49315 -10.30984 -10.23208 -10.15507 -9.91618 -9.54750 -9.04256 -8.86502 -8.53393 -7.86772 -6.11424 -4.20786 2.31523 2.34015 2.39689 2.75496 3.25249 3.30604 3.31579 3.42599 3.43945 4.07903 4.12281 4.34568 4.45766 4.46933 4.54980 4.57781 4.67865 4.84846 4.94882 5.06495 5.09721 5.12821 5.18026 5.20613 5.31496 5.37102 5.45795 5.46249 5.52235 5.70410 5.75685 5.87400 5.92982 5.98442 6.05721 6.10645 6.21921 6.35804 6.49304 6.84741 6.99076 7.07043 7.14088 7.17552 7.49670 7.58566 7.71222 7.91986 7.93392 8.16826 8.70768 8.79962 9.17903 9.47070 10.94451 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.002277 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.977021 B =12291.332017 C =13587.675816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.709 5.709 13 C 0.504 3.496 14 O -0.556 6.556 15 C -0.110 4.110 16 H 0.090 0.910 17 C -0.108 4.108 18 C -0.106 4.106 19 C -0.108 4.108 20 H 0.100 0.900 21 C 0.523 3.477 22 O -0.535 6.535 23 N -0.734 5.734 24 C 0.145 3.855 25 H 0.096 0.904 26 C -0.163 4.163 27 C -0.035 4.035 28 C 0.197 3.803 29 N -0.422 5.422 30 C -0.097 4.097 31 C -0.097 4.097 32 H 0.014 0.986 33 H 0.025 0.975 34 H 0.089 0.911 35 H 0.265 0.735 36 H 0.387 0.613 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.402 0.598 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.115 0.885 46 H 0.125 0.875 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.115 -7.209 22.501 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.289 3.711 14 O -0.435 6.435 15 C -0.132 4.132 16 H 0.108 0.892 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.129 4.129 20 H 0.118 0.882 21 C 0.310 3.690 22 O -0.410 6.410 23 N -0.387 5.387 24 C 0.039 3.961 25 H 0.114 0.886 26 C -0.221 4.221 27 C -0.075 4.075 28 C -0.121 4.121 29 N -0.098 5.098 30 C -0.135 4.135 31 C -0.135 4.135 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.143 0.857 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.562 -7.489 22.126 27.526 hybrid contribution 0.918 -0.668 -1.111 1.588 sum 15.480 -8.157 21.015 27.346 Atomic orbital electron populations 1.22076 0.98583 0.99049 1.00857 1.18713 0.90962 0.93945 0.80148 0.93472 1.21181 1.32438 1.13165 0.90384 0.92210 1.24890 0.94842 0.94965 0.99039 1.69891 1.35832 1.22415 1.23952 0.86520 0.79131 0.79612 0.81888 1.20183 1.21132 1.20210 1.46542 1.65023 1.13476 1.10644 1.20408 0.78511 0.87462 0.84735 1.90643 1.51478 1.16207 1.85175 1.21392 0.97744 0.99339 0.94709 0.89161 1.21498 0.95452 1.00422 0.97198 1.21516 1.01667 0.97490 0.93706 1.21437 0.99802 0.98916 0.92732 0.88156 1.20835 0.80432 0.77949 0.89748 1.90701 1.56203 1.58802 1.35342 1.46186 1.18500 1.57675 1.16354 1.20885 0.96450 0.91909 0.86875 0.88563 1.22173 1.01444 0.99548 0.98967 1.19680 0.97727 0.90887 0.99233 1.28885 0.94392 0.94488 0.94352 1.81135 1.08321 1.10849 1.09503 1.21389 0.93654 1.00511 0.97947 1.21335 1.02652 0.97271 0.92214 0.96679 0.95546 0.89208 0.92537 0.78042 0.90729 0.90975 0.91562 0.91252 0.76363 0.91263 0.91082 0.91806 0.86708 0.85695 0.91071 0.91266 0.91099 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.00 11.32 55.43 0.63 -24.38 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.71 -14.67 4.96 -54.93 -0.27 -14.94 16 13 C 0.50 9.86 7.12 -10.99 -0.08 9.78 16 14 O -0.56 -13.19 15.64 5.56 0.09 -13.11 16 15 C -0.11 -1.53 2.53 -91.77 -0.23 -1.77 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.11 -1.22 5.10 -26.73 -0.14 -1.36 16 18 C -0.11 -0.94 5.10 -26.73 -0.14 -1.08 16 19 C -0.11 -0.96 2.53 -91.77 -0.23 -1.20 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 C 0.52 4.84 7.12 -10.98 -0.08 4.77 16 22 O -0.53 -6.90 15.64 5.56 0.09 -6.81 16 23 N -0.73 -4.18 4.67 -53.81 -0.25 -4.43 16 24 C 0.14 0.60 2.55 -67.93 -0.17 0.43 16 25 H 0.10 0.62 7.58 -51.93 -0.39 0.23 16 26 C -0.16 -0.52 9.48 37.16 0.35 -0.17 16 27 C -0.03 -0.06 5.25 -29.52 -0.16 -0.21 16 28 C 0.20 1.29 15.13 -20.89 -0.32 0.97 16 29 N -0.42 -4.49 18.51 42.00 0.78 -3.71 16 30 C -0.10 -1.07 4.49 -26.71 -0.12 -1.19 16 31 C -0.10 -1.27 4.49 -26.71 -0.12 -1.39 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.39 6.96 7.96 -40.82 -0.32 6.64 16 37 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.47 7.57 -51.93 -0.39 0.08 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 1.44 8.02 -40.82 -0.33 1.11 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.11 -0.08 8.14 -51.92 -0.42 -0.51 16 46 H 0.13 -0.12 8.14 -51.93 -0.42 -0.54 16 47 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 48 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 49 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 50 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 408.69 15.07 6.16 6.16 Total: -1.00 -35.77 408.69 -7.87 -43.64 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.41 Total: 3.87 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.65 Total: -1.95 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.88 Total: -47.45 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.17 Total: -19.92 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.77 -7.87 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000477647809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.053 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds