Wall clock time and date at job start Tue Mar 31 2020 19:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.47135 * 300.00342 * 15 13 12 17 17 C 1.53005 * 109.46725 * 60.00029 * 15 13 12 18 18 C 1.52997 * 109.47037 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46947 * 299.99799 * 18 17 15 20 20 H 1.08996 * 109.46925 * 300.00039 * 19 18 17 21 21 C 1.50701 * 109.46955 * 179.97438 * 19 18 17 22 22 O 1.21283 * 120.00044 * 239.99791 * 21 19 18 23 23 N 1.34777 * 120.00131 * 60.00037 * 21 19 18 24 24 C 1.46500 * 120.00270 * 179.97438 * 23 21 19 25 25 H 1.09004 * 109.46983 * 35.00279 * 24 23 21 26 26 C 1.52998 * 109.47286 * 275.00406 * 24 23 21 27 27 C 1.52994 * 109.47255 * 154.99932 * 24 23 21 28 28 C 1.47199 * 109.47432 * 295.00485 * 27 24 23 29 29 N 9.51362 * 107.13069 * 70.17157 * 5 1 2 30 30 C 1.52999 * 109.46803 * 60.00147 * 19 18 17 31 31 C 1.52997 * 109.47273 * 179.97438 * 15 13 12 32 32 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 35 35 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 36 36 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 37 37 H 1.08997 * 109.46918 * 300.00281 * 17 15 13 38 38 H 1.08996 * 109.47059 * 60.00266 * 17 15 13 39 39 H 1.09006 * 109.47443 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47340 * 59.99584 * 18 17 15 41 41 H 0.97005 * 119.99528 * 0.02562 * 23 21 19 42 42 H 1.09003 * 109.47514 * 59.99758 * 26 24 23 43 43 H 1.08996 * 109.47045 * 179.97438 * 26 24 23 44 44 H 1.09004 * 109.47006 * 299.99859 * 26 24 23 45 45 H 1.09007 * 109.47141 * 55.00266 * 27 24 23 46 46 H 1.09004 * 109.47280 * 175.00059 * 27 24 23 47 47 H 1.09006 * 109.46801 * 179.97438 * 30 19 18 48 48 H 1.08996 * 109.47469 * 60.00225 * 30 19 18 49 49 H 1.08996 * 109.47573 * 300.00384 * 31 15 13 50 50 H 1.08998 * 109.47067 * 60.00308 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 1.9762 -1.5508 3.8325 17 6 4.0515 -1.2798 3.3221 18 6 4.5608 -2.0017 4.5711 19 6 4.6123 -1.0190 5.7428 20 1 5.2852 -0.1972 5.4983 21 6 5.1134 -1.7303 6.9733 22 8 4.4174 -1.7902 7.9647 23 7 6.3350 -2.2997 6.9720 24 6 6.8223 -2.9907 8.1684 25 1 5.9887 -3.4846 8.6676 26 6 7.4578 -1.9755 9.1204 27 6 7.8659 -4.0343 7.7651 28 6 7.2261 -5.0771 6.9465 29 7 6.7376 -5.8783 6.3132 30 6 3.2098 -0.4682 6.0083 31 6 2.7011 0.2543 4.7587 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 0.7093 1.1619 -3.4844 36 1 2.2491 -1.6318 1.1525 37 1 4.0147 -1.9801 2.4876 38 1 4.7243 -0.4580 3.0773 39 1 5.5598 -2.3946 4.3818 40 1 3.8879 -2.8236 4.8156 41 1 6.8917 -2.2514 6.1791 42 1 6.7143 -1.2319 9.4078 43 1 7.8199 -2.4895 10.0107 44 1 8.2914 -1.4815 8.6211 45 1 8.6563 -3.5537 7.1884 46 1 8.2928 -4.4861 8.6605 47 1 3.2464 0.2316 6.8433 48 1 2.5369 -1.2900 6.2528 49 1 3.3741 1.0759 4.5137 50 1 1.7022 0.6471 4.9480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000477647809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:17 Heat of formation + Delta-G solvation = -109.561249 kcal Electronic energy + Delta-G solvation = -28919.049070 eV Core-core repulsion = 24943.677498 eV Total energy + Delta-G solvation = -3975.371572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51463 -40.67748 -38.61868 -37.89603 -36.66830 -36.44611 -34.35272 -33.28318 -32.14220 -31.45857 -30.42398 -28.98722 -27.35212 -25.82747 -23.74272 -23.28793 -22.47373 -21.59785 -20.97960 -20.64607 -18.93246 -18.86425 -17.90453 -17.44084 -17.30642 -17.13383 -16.61008 -16.14857 -15.66744 -15.40947 -15.17140 -15.04292 -15.00204 -14.67934 -14.53276 -14.44167 -14.28380 -13.89316 -13.71236 -13.41268 -13.27872 -13.21896 -13.06082 -12.99824 -12.84545 -12.71081 -12.60430 -12.52680 -12.42043 -12.29551 -12.22773 -12.13742 -12.07763 -11.82407 -11.46234 -11.15721 -11.07620 -10.76267 -10.60844 -10.43729 -10.07593 -9.72261 -8.17335 -6.35041 1.44442 1.46474 1.54329 1.67722 1.85226 1.85483 1.92109 2.23528 2.35835 2.65837 3.10898 3.12759 3.60847 3.63247 3.72063 3.86081 4.06841 4.13471 4.16323 4.28162 4.35342 4.41100 4.42311 4.51787 4.52404 4.73186 4.75525 4.81176 4.86447 4.89037 4.91865 4.94675 5.04804 5.09268 5.09808 5.15813 5.17979 5.23879 5.33379 5.43903 5.45361 5.47593 5.60209 5.62145 5.69348 5.91056 6.10036 6.56714 6.70092 6.72968 6.99767 7.31187 7.32799 7.59234 8.88775 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.002277 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.977021 B =12291.332017 C =13587.675816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.705 5.705 13 C 0.500 3.500 14 O -0.602 6.602 15 C -0.099 4.099 16 H 0.106 0.894 17 C -0.103 4.103 18 C -0.096 4.096 19 C -0.105 4.105 20 H 0.119 0.881 21 C 0.523 3.477 22 O -0.578 6.578 23 N -0.720 5.720 24 C 0.143 3.857 25 H 0.070 0.930 26 C -0.156 4.156 27 C -0.027 4.027 28 C 0.226 3.774 29 N -0.502 5.502 30 C -0.088 4.088 31 C -0.091 4.091 32 H 0.010 0.990 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.415 0.585 42 H 0.037 0.963 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.363 -9.143 23.225 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.354 5.354 13 C 0.288 3.712 14 O -0.484 6.484 15 C -0.120 4.120 16 H 0.124 0.876 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.126 4.126 20 H 0.137 0.863 21 C 0.311 3.689 22 O -0.457 6.457 23 N -0.374 5.374 24 C 0.037 3.963 25 H 0.088 0.912 26 C -0.215 4.215 27 C -0.066 4.066 28 C -0.091 4.091 29 N -0.179 5.179 30 C -0.126 4.126 31 C -0.129 4.129 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.239 0.761 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.252 0.748 42 H 0.056 0.944 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.170 0.830 46 H 0.179 0.821 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.865 -9.470 22.862 30.521 hybrid contribution -0.089 0.019 -1.257 1.260 sum 17.776 -9.451 21.606 29.531 Atomic orbital electron populations 1.21910 0.98632 0.99320 0.99472 1.18311 0.90902 0.91927 0.82208 0.98476 1.21507 1.32565 1.13524 0.90752 0.90819 1.25820 0.94905 0.95599 1.02384 1.70048 1.37001 1.23950 1.24642 0.85395 0.78744 0.78619 0.77560 1.19007 1.21255 1.19366 1.46307 1.65097 1.14138 1.09812 1.21397 0.77116 0.87024 0.85690 1.90621 1.53243 1.18576 1.85980 1.21388 0.99722 0.99236 0.91655 0.87589 1.21492 0.93353 1.00581 0.98694 1.21446 1.02978 0.96796 0.92114 1.21395 0.98747 0.99546 0.92882 0.86320 1.20782 0.81200 0.77926 0.89026 1.90693 1.57654 1.60607 1.36729 1.46136 1.17410 1.56306 1.17505 1.20980 0.96425 0.92556 0.86329 0.91165 1.22116 1.00979 0.98672 0.99694 1.20030 0.97097 0.88959 1.00536 1.29756 0.92625 0.93756 0.92918 1.81166 1.10798 1.13537 1.12424 1.21247 0.94992 0.99931 0.96426 1.21262 1.01581 0.97108 0.92951 0.97104 0.94235 0.91505 0.92573 0.76148 0.90298 0.91086 0.88735 0.91791 0.74751 0.94369 0.88983 0.89846 0.82956 0.82080 0.91294 0.92069 0.91874 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.18 2.56 44.25 0.11 14.29 16 3 H 0.00 -0.17 7.58 -2.39 -0.02 -0.18 16 4 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 N -0.71 -29.30 4.96 -446.10 -2.21 -31.51 16 13 C 0.50 19.88 7.12 87.66 0.62 20.50 16 14 O -0.60 -29.79 15.64 -3.02 -0.05 -29.84 16 15 C -0.10 -2.69 2.53 -11.54 -0.03 -2.72 16 16 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 17 C -0.10 -2.14 5.10 30.59 0.16 -1.99 16 18 C -0.10 -1.45 5.10 30.60 0.16 -1.30 16 19 C -0.10 -1.68 2.53 -11.54 -0.03 -1.71 16 20 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 21 C 0.52 8.85 7.12 87.66 0.62 9.47 16 22 O -0.58 -14.70 15.64 -3.04 -0.05 -14.75 16 23 N -0.72 -6.19 4.67 -442.54 -2.07 -8.25 16 24 C 0.14 0.78 2.55 44.99 0.11 0.90 16 25 H 0.07 0.81 7.58 -2.39 -0.02 0.79 16 26 C -0.16 -0.52 9.48 71.98 0.68 0.17 16 27 C -0.03 0.03 5.25 28.79 0.15 0.18 16 28 C 0.23 2.39 15.13 89.49 1.35 3.75 16 29 N -0.50 -10.15 18.51 19.96 0.37 -9.78 16 30 C -0.09 -1.89 4.49 30.61 0.14 -1.75 16 31 C -0.09 -2.40 4.49 30.61 0.14 -2.27 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 3.78 6.07 -2.38 -0.01 3.77 16 35 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.40 14.09 7.96 -92.71 -0.74 13.35 16 37 H 0.08 1.60 7.56 -2.39 -0.02 1.58 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 0.96 7.57 -2.38 -0.02 0.95 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.42 1.31 8.02 -92.70 -0.74 0.57 16 42 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.08 -0.03 8.14 -2.39 -0.02 -0.04 16 45 H 0.15 -1.15 8.14 -2.38 -0.02 -1.17 16 46 H 0.16 -1.18 8.14 -2.38 -0.02 -1.20 16 47 H 0.07 1.52 8.10 -2.38 -0.02 1.51 16 48 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 49 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 50 H 0.05 1.62 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -83.55 408.69 3.26 -80.29 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.53 Total: 18.99 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.53 Total: 3.68 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.67 Total: -102.37 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.09 Total: -44.58 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -83.55 3.26 -80.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000477647809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.274 kcal (2) G-P(sol) polarization free energy of solvation -83.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds