Wall clock time and date at job start Tue Mar 31 2020 19:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46824 * 2 1 4 4 C 1.46905 * 111.00293 * 300.94433 * 3 2 1 5 5 C 1.53003 * 109.46475 * 288.94452 * 4 3 2 6 6 C 1.46907 * 110.99962 * 64.89284 * 3 2 1 7 7 C 1.53001 * 109.46912 * 66.04293 * 6 3 2 8 8 O 1.42899 * 109.46845 * 65.00168 * 7 6 3 9 9 C 1.35986 * 117.00041 * 180.02562 * 8 7 6 10 10 C 1.38708 * 119.98482 * 0.27337 * 9 8 7 11 11 C 1.38094 * 120.01696 * 180.23599 * 10 9 8 12 12 C 1.38840 * 119.98303 * 359.47115 * 11 10 9 13 13 N 1.40149 * 120.01410 * 180.29899 * 12 11 10 14 14 C 1.34785 * 119.99717 * 144.89638 * 13 12 11 15 15 O 1.21588 * 119.99784 * 4.58050 * 14 13 12 16 16 N 1.34771 * 119.99836 * 184.58112 * 14 13 12 17 17 C 1.46500 * 120.00170 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47122 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00682 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99684 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99774 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47392 * 119.99955 * 22 20 18 25 25 H 1.48500 * 109.47220 * 239.99555 * 22 20 18 26 26 C 1.38840 * 119.96908 * 0.27559 * 12 11 10 27 27 C 1.38100 * 119.98545 * 0.02562 * 26 12 11 28 28 H 1.08996 * 109.47641 * 305.06796 * 1 2 3 29 29 H 1.09006 * 109.47488 * 65.07357 * 1 2 3 30 30 H 1.08999 * 109.47115 * 185.06903 * 1 2 3 31 31 H 1.08997 * 109.47090 * 240.00399 * 2 1 3 32 32 H 1.08994 * 109.47107 * 119.99697 * 2 1 3 33 33 H 1.08998 * 109.47243 * 48.93691 * 4 3 2 34 34 H 1.08994 * 109.47139 * 168.94450 * 4 3 2 35 35 H 1.08989 * 109.47728 * 65.03715 * 5 4 3 36 36 H 1.09001 * 109.47002 * 185.04456 * 5 4 3 37 37 H 1.09004 * 109.46765 * 305.03475 * 5 4 3 38 38 H 1.08999 * 109.47159 * 306.04822 * 6 3 2 39 39 H 1.08999 * 109.47112 * 186.04495 * 6 3 2 40 40 H 1.09000 * 109.47188 * 305.00664 * 7 6 3 41 41 H 1.08999 * 109.47232 * 184.99542 * 7 6 3 42 42 H 1.08003 * 119.99333 * 0.02562 * 10 9 8 43 43 H 1.08002 * 120.01382 * 179.74232 * 11 10 9 44 44 H 0.96995 * 120.00067 * 324.89910 * 13 12 11 45 45 H 0.97003 * 119.99987 * 0.02562 * 16 14 13 46 46 H 1.09007 * 109.46769 * 300.00281 * 17 16 14 47 47 H 1.08997 * 109.47057 * 59.99705 * 17 16 14 48 48 H 0.97001 * 119.99953 * 180.02562 * 21 20 18 49 49 H 1.08000 * 120.00303 * 180.02562 * 26 12 11 50 50 H 1.08001 * 119.98917 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5302 2.1165 -1.1762 5 6 2.2366 1.5969 -2.4300 6 6 1.6464 2.0754 1.2419 7 6 2.3760 1.4313 2.4224 8 8 3.7831 1.6383 2.2830 9 6 4.5821 1.1242 3.2558 10 6 4.0220 0.4305 4.3183 11 6 4.8324 -0.0877 5.3092 12 6 6.2091 0.0765 5.2359 13 7 7.0327 -0.4545 6.2379 14 6 8.2481 -0.9440 5.9220 15 8 8.6643 -0.8497 4.7835 16 7 9.0020 -1.5380 6.8681 17 6 10.3234 -2.0696 6.5250 18 6 10.9540 -2.6779 7.7510 19 1 10.4239 -2.6690 8.6919 20 6 12.2084 -3.2448 7.6718 21 7 12.8542 -3.2552 6.5262 22 14 12.9905 -3.9981 9.1917 23 1 12.0657 -3.8584 10.3452 24 1 13.2631 -5.4372 8.9467 25 1 14.2648 -3.2972 9.4918 26 6 6.7696 0.7664 4.1694 27 6 5.9574 1.2894 3.1825 28 1 -0.3634 0.5904 0.8411 29 1 -0.3634 0.4331 -0.9320 30 1 -0.3633 -1.0236 0.0908 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4553 1.9662 -1.2763 34 1 1.7388 3.1795 -1.0558 35 1 1.9565 0.5575 -2.6005 36 1 1.9407 2.1986 -3.2895 37 1 3.3159 1.6647 -2.2934 38 1 0.5698 1.9952 1.3928 39 1 1.9262 3.1265 1.1715 40 1 2.1661 0.3618 2.4396 41 1 2.0327 1.8840 3.3526 42 1 2.9514 0.2984 4.3725 43 1 4.3959 -0.6242 6.1386 44 1 6.7280 -0.4698 7.1586 45 1 8.6698 -1.6136 7.7763 46 1 10.2188 -2.8329 5.7538 47 1 10.9546 -1.2623 6.1537 48 1 13.7365 -3.6544 6.4704 49 1 7.8405 0.8941 4.1117 50 1 6.3933 1.8265 2.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488251058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:12 Heat of formation + Delta-G solvation = -33.654665 kcal Electronic energy + Delta-G solvation = -27874.966683 eV Core-core repulsion = 23902.886668 eV Total energy + Delta-G solvation = -3972.080015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39757 -39.57299 -38.63998 -37.10673 -34.30149 -33.92078 -32.34893 -32.08774 -31.31384 -30.81348 -28.73392 -27.80281 -26.73657 -24.80065 -23.55560 -22.96002 -22.16116 -21.55981 -20.27964 -19.90086 -18.30848 -18.09389 -17.27294 -16.97125 -16.40325 -16.02684 -15.60868 -15.23636 -14.92412 -14.85290 -14.57000 -14.39025 -14.09121 -13.97400 -13.48105 -13.35913 -13.19445 -13.08653 -12.87582 -12.74691 -12.51230 -12.36163 -12.21399 -11.99707 -11.92174 -11.77281 -11.71217 -11.33884 -11.09791 -10.97959 -10.93965 -10.90384 -10.63067 -10.31042 -9.63593 -9.38127 -9.37470 -8.81849 -8.75433 -8.61485 -7.96937 -7.40811 -6.16771 -4.23570 1.47096 1.56973 3.12834 3.23714 3.26018 3.31844 3.35539 3.49380 3.69626 4.07376 4.31874 4.46921 4.52438 4.63217 4.78751 4.84336 4.87842 4.90642 4.94826 4.96980 4.99219 5.03696 5.13277 5.17204 5.19568 5.26086 5.41003 5.47656 5.51079 5.58101 5.62249 5.65504 5.75636 5.80342 5.97363 6.11211 6.11459 6.39903 6.53136 6.68613 6.71775 6.74715 7.08281 7.16117 7.43136 7.51516 7.53683 7.54241 7.84881 8.00007 8.70987 8.85863 9.23281 9.43961 10.93441 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.001653 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.035252 B =16939.937433 C =17286.631242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.528 5.528 4 C 0.046 3.954 5 C -0.148 4.148 6 C 0.052 3.948 7 C 0.064 3.936 8 O -0.299 6.299 9 C 0.105 3.895 10 C -0.194 4.194 11 C -0.116 4.116 12 C 0.141 3.859 13 N -0.696 5.696 14 C 0.690 3.310 15 O -0.584 6.584 16 N -0.723 5.723 17 C 0.265 3.735 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.080 4.080 27 C -0.131 4.131 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.401 0.599 45 H 0.388 0.612 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.266 0.734 49 H 0.150 0.850 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.941 10.891 -9.673 31.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.082 4.082 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.012 4.012 8 O -0.213 6.213 9 C 0.059 3.941 10 C -0.213 4.213 11 C -0.137 4.137 12 C 0.046 3.954 13 N -0.344 5.344 14 C 0.391 3.609 15 O -0.462 6.462 16 N -0.375 5.375 17 C 0.144 3.856 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.101 4.101 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.236 0.764 45 H 0.220 0.780 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.167 0.833 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.681 10.940 -10.973 30.854 hybrid contribution -0.914 -0.722 1.915 2.242 sum -27.595 10.218 -9.057 30.789 Atomic orbital electron populations 1.22445 0.98435 1.02540 1.01922 1.22260 0.92547 0.90410 1.03367 1.62227 1.59335 1.02068 1.01515 1.22146 0.97237 0.98179 0.90619 1.21761 1.01916 1.00825 0.96040 1.22208 0.96975 0.99301 0.89139 1.22782 0.80150 1.00484 0.97770 1.86174 1.16968 1.73440 1.44716 1.18955 0.90780 0.95762 0.88577 1.20872 0.99645 1.04586 0.96199 1.20618 0.91814 1.01484 0.99816 1.17461 0.89176 0.97089 0.91692 1.42757 1.17128 1.64682 1.09855 1.16167 0.79990 0.79046 0.85731 1.90871 1.72061 1.63702 1.19541 1.45762 1.20574 1.60420 1.10705 1.19050 0.75916 0.94005 0.96580 1.21249 1.02233 1.39320 0.95345 0.91844 1.24949 0.96794 0.95758 0.96530 1.69985 1.13759 1.43941 1.24469 0.86345 0.79206 0.78870 0.82364 1.19673 1.20805 1.20797 1.21285 1.01482 0.94324 0.92991 1.20340 0.89931 1.03934 1.00797 0.92529 0.92286 0.91890 0.90236 0.90473 0.94364 0.90967 0.92895 0.92473 0.91505 0.92496 0.89623 0.92076 0.91952 0.85844 0.85840 0.76413 0.77969 0.95515 0.95487 0.92467 0.83271 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 9.22 37.16 0.34 -0.73 16 2 C 0.04 0.30 5.71 -3.82 -0.02 0.28 16 3 N -0.53 -4.26 4.62 -234.62 -1.08 -5.35 16 4 C 0.05 0.31 5.50 -3.82 -0.02 0.28 16 5 C -0.15 -0.98 9.84 37.16 0.37 -0.61 16 6 C 0.05 0.36 5.17 -3.82 -0.02 0.34 16 7 C 0.06 0.53 4.80 37.16 0.18 0.71 16 8 O -0.30 -3.61 10.08 -19.69 -0.20 -3.81 16 9 C 0.10 1.38 6.69 -39.23 -0.26 1.12 16 10 C -0.19 -2.27 9.03 -39.46 -0.36 -2.63 16 11 C -0.12 -1.46 9.96 -39.41 -0.39 -1.85 16 12 C 0.14 2.18 6.30 -83.61 -0.53 1.65 16 13 N -0.70 -10.87 5.35 -14.19 -0.08 -10.94 16 14 C 0.69 14.22 8.41 -86.92 -0.73 13.49 16 15 O -0.58 -14.30 13.78 5.29 0.07 -14.23 16 16 N -0.72 -15.26 5.55 -66.41 -0.37 -15.63 16 17 C 0.27 7.04 5.43 -5.20 -0.03 7.01 16 18 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -26.02 13.29 55.43 0.74 -25.29 16 22 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.08 -1.32 8.69 -39.41 -0.34 -1.67 16 27 C -0.13 -1.91 9.98 -39.46 -0.39 -2.30 16 28 H 0.06 0.30 6.18 -51.93 -0.32 -0.02 16 29 H 0.06 0.32 6.44 -51.93 -0.33 -0.01 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.59 6.81 -51.93 -0.35 0.24 16 32 H 0.08 0.61 6.17 -51.93 -0.32 0.29 16 33 H 0.04 0.22 5.86 -51.93 -0.30 -0.08 16 34 H 0.07 0.46 7.83 -51.93 -0.41 0.06 16 35 H 0.05 0.34 6.96 -51.94 -0.36 -0.02 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.31 6.08 -51.93 -0.32 -0.01 16 39 H 0.09 0.61 7.87 -51.93 -0.41 0.20 16 40 H 0.06 0.49 5.75 -51.93 -0.30 0.19 16 41 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 42 H 0.12 1.11 6.29 -52.48 -0.33 0.78 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.40 4.78 8.84 -40.82 -0.36 4.42 16 45 H 0.39 6.90 8.34 -40.82 -0.34 6.56 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.15 2.79 6.22 -52.49 -0.33 2.46 16 50 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -33.18 399.04 -10.23 -43.41 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.67 Total: 8.30 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -2.63 Total: 1.76 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.79 Total: -57.21 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.13 Total: -18.04 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.18 -10.23 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488251058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.751 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds