Wall clock time and date at job start Tue Mar 31 2020 19:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46824 * 2 1 4 4 C 1.46905 * 111.00293 * 300.94433 * 3 2 1 5 5 C 1.53003 * 109.46475 * 288.94452 * 4 3 2 6 6 C 1.46907 * 110.99962 * 64.89284 * 3 2 1 7 7 C 1.53001 * 109.46912 * 66.04293 * 6 3 2 8 8 O 1.42899 * 109.46845 * 65.00168 * 7 6 3 9 9 C 1.35986 * 117.00041 * 180.02562 * 8 7 6 10 10 C 1.38708 * 119.98482 * 0.27337 * 9 8 7 11 11 C 1.38094 * 120.01696 * 180.23599 * 10 9 8 12 12 C 1.38840 * 119.98303 * 359.47115 * 11 10 9 13 13 N 1.40149 * 120.01410 * 180.29899 * 12 11 10 14 14 C 1.34785 * 119.99717 * 144.89638 * 13 12 11 15 15 O 1.21588 * 119.99784 * 4.58050 * 14 13 12 16 16 N 1.34771 * 119.99836 * 184.58112 * 14 13 12 17 17 C 1.46500 * 120.00170 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47122 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00682 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99684 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99774 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47392 * 119.99955 * 22 20 18 25 25 H 1.48500 * 109.47220 * 239.99555 * 22 20 18 26 26 C 1.38840 * 119.96908 * 0.27559 * 12 11 10 27 27 C 1.38100 * 119.98545 * 0.02562 * 26 12 11 28 28 H 1.08996 * 109.47641 * 305.06796 * 1 2 3 29 29 H 1.09006 * 109.47488 * 65.07357 * 1 2 3 30 30 H 1.08999 * 109.47115 * 185.06903 * 1 2 3 31 31 H 1.08997 * 109.47090 * 240.00399 * 2 1 3 32 32 H 1.08994 * 109.47107 * 119.99697 * 2 1 3 33 33 H 1.08998 * 109.47243 * 48.93691 * 4 3 2 34 34 H 1.08994 * 109.47139 * 168.94450 * 4 3 2 35 35 H 1.08989 * 109.47728 * 65.03715 * 5 4 3 36 36 H 1.09001 * 109.47002 * 185.04456 * 5 4 3 37 37 H 1.09004 * 109.46765 * 305.03475 * 5 4 3 38 38 H 1.08999 * 109.47159 * 306.04822 * 6 3 2 39 39 H 1.08999 * 109.47112 * 186.04495 * 6 3 2 40 40 H 1.09000 * 109.47188 * 305.00664 * 7 6 3 41 41 H 1.08999 * 109.47232 * 184.99542 * 7 6 3 42 42 H 1.08003 * 119.99333 * 0.02562 * 10 9 8 43 43 H 1.08002 * 120.01382 * 179.74232 * 11 10 9 44 44 H 0.96995 * 120.00067 * 324.89910 * 13 12 11 45 45 H 0.97003 * 119.99987 * 0.02562 * 16 14 13 46 46 H 1.09007 * 109.46769 * 300.00281 * 17 16 14 47 47 H 1.08997 * 109.47057 * 59.99705 * 17 16 14 48 48 H 0.97001 * 119.99953 * 180.02562 * 21 20 18 49 49 H 1.08000 * 120.00303 * 180.02562 * 26 12 11 50 50 H 1.08001 * 119.98917 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5302 2.1165 -1.1762 5 6 2.2366 1.5969 -2.4300 6 6 1.6464 2.0754 1.2419 7 6 2.3760 1.4313 2.4224 8 8 3.7831 1.6383 2.2830 9 6 4.5821 1.1242 3.2558 10 6 4.0220 0.4305 4.3183 11 6 4.8324 -0.0877 5.3092 12 6 6.2091 0.0765 5.2359 13 7 7.0327 -0.4545 6.2379 14 6 8.2481 -0.9440 5.9220 15 8 8.6643 -0.8497 4.7835 16 7 9.0020 -1.5380 6.8681 17 6 10.3234 -2.0696 6.5250 18 6 10.9540 -2.6779 7.7510 19 1 10.4239 -2.6690 8.6919 20 6 12.2084 -3.2448 7.6718 21 7 12.8542 -3.2552 6.5262 22 14 12.9905 -3.9981 9.1917 23 1 12.0657 -3.8584 10.3452 24 1 13.2631 -5.4372 8.9467 25 1 14.2648 -3.2972 9.4918 26 6 6.7696 0.7664 4.1694 27 6 5.9574 1.2894 3.1825 28 1 -0.3634 0.5904 0.8411 29 1 -0.3634 0.4331 -0.9320 30 1 -0.3633 -1.0236 0.0908 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4553 1.9662 -1.2763 34 1 1.7388 3.1795 -1.0558 35 1 1.9565 0.5575 -2.6005 36 1 1.9407 2.1986 -3.2895 37 1 3.3159 1.6647 -2.2934 38 1 0.5698 1.9952 1.3928 39 1 1.9262 3.1265 1.1715 40 1 2.1661 0.3618 2.4396 41 1 2.0327 1.8840 3.3526 42 1 2.9514 0.2984 4.3725 43 1 4.3959 -0.6242 6.1386 44 1 6.7280 -0.4698 7.1586 45 1 8.6698 -1.6136 7.7763 46 1 10.2188 -2.8329 5.7538 47 1 10.9546 -1.2623 6.1537 48 1 13.7365 -3.6544 6.4704 49 1 7.8405 0.8941 4.1117 50 1 6.3933 1.8265 2.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488251058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:11 Heat of formation + Delta-G solvation = -57.269917 kcal Electronic energy + Delta-G solvation = -27875.990717 eV Core-core repulsion = 23902.886668 eV Total energy + Delta-G solvation = -3973.104049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64563 -40.72594 -39.42004 -38.20867 -36.17036 -35.36816 -34.29131 -32.73845 -32.03058 -31.70217 -30.07399 -28.81503 -28.19257 -25.38496 -24.93494 -24.28111 -23.18117 -22.76775 -21.70506 -20.61135 -19.79986 -19.19506 -18.58402 -17.95981 -17.58159 -17.01330 -16.75093 -16.70385 -16.32469 -15.96025 -15.85078 -15.49186 -15.04990 -14.97271 -14.78161 -14.41553 -14.15884 -14.08839 -14.01223 -13.90025 -13.66445 -13.58784 -13.16453 -12.99411 -12.88385 -12.85697 -12.74709 -12.43691 -12.29974 -12.20562 -12.03454 -11.93443 -11.63402 -11.44407 -11.34354 -11.17843 -10.81448 -10.77321 -9.93963 -9.86360 -9.13885 -8.58953 -8.28120 -6.44559 0.39675 0.43252 1.44405 1.45995 1.58955 1.76844 2.13796 2.35040 2.40163 2.87361 2.97368 3.07233 3.44521 3.83836 3.94602 3.99233 4.01416 4.14455 4.28477 4.29360 4.35205 4.39971 4.43209 4.48181 4.48680 4.63438 4.67218 4.69287 4.75035 4.90332 4.97430 5.02424 5.07393 5.09928 5.12881 5.14985 5.26358 5.26473 5.35339 5.39610 5.44385 5.46298 5.56489 5.68036 5.83914 5.94204 6.16941 6.19689 6.22581 6.60164 6.67000 7.20765 7.26714 7.63657 8.84367 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.001653 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.035252 B =16939.937433 C =17286.631242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.042 3.958 3 N -0.551 5.551 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.053 3.947 7 C 0.055 3.945 8 O -0.314 6.314 9 C 0.111 3.889 10 C -0.184 4.184 11 C -0.098 4.098 12 C 0.112 3.888 13 N -0.671 5.671 14 C 0.690 3.310 15 O -0.629 6.629 16 N -0.716 5.716 17 C 0.284 3.716 18 C -0.554 4.554 19 H 0.086 0.914 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.987 3.013 23 H -0.252 1.252 24 H -0.279 1.279 25 H -0.280 1.280 26 C -0.102 4.102 27 C -0.148 4.148 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.422 0.578 45 H 0.407 0.593 46 H -0.013 1.013 47 H -0.012 1.012 48 H 0.269 0.731 49 H 0.114 0.886 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.389 10.663 -7.517 33.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.086 4.086 3 N -0.275 5.275 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.074 4.074 7 C -0.020 4.020 8 O -0.228 6.228 9 C 0.065 3.935 10 C -0.203 4.203 11 C -0.119 4.119 12 C 0.017 3.983 13 N -0.321 5.321 14 C 0.390 3.610 15 O -0.510 6.510 16 N -0.369 5.369 17 C 0.161 3.839 18 C -0.592 4.592 19 H 0.104 0.896 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.810 3.190 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.123 4.123 27 C -0.167 4.167 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.179 0.821 43 H 0.177 0.823 44 H 0.261 0.739 45 H 0.243 0.757 46 H 0.005 0.995 47 H 0.006 0.994 48 H 0.078 0.922 49 H 0.132 0.868 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -30.222 10.745 -8.776 33.254 hybrid contribution 0.004 -0.560 1.088 1.224 sum -30.218 10.185 -7.688 32.802 Atomic orbital electron populations 1.22365 0.96911 1.02998 1.02277 1.22219 0.93774 0.89962 1.02607 1.62210 1.60341 1.02635 1.02340 1.22154 0.97832 0.98033 0.90045 1.21740 1.00644 1.01122 0.96816 1.22241 0.98010 0.98867 0.88308 1.23124 0.78012 1.01385 0.99433 1.86177 1.18974 1.73181 1.44456 1.19004 0.90289 0.95132 0.89092 1.21266 1.01422 1.02825 0.94782 1.20945 0.90097 1.00199 1.00617 1.17679 0.90439 0.98450 0.91737 1.42345 1.15227 1.63362 1.11214 1.16299 0.81166 0.78778 0.84775 1.90853 1.73443 1.65184 1.21533 1.45297 1.19101 1.60644 1.11871 1.18468 0.77888 0.91681 0.95874 1.21632 1.02675 1.39023 0.95888 0.89639 1.26074 0.97435 0.96080 1.00063 1.70150 1.14352 1.45079 1.27339 0.85075 0.78164 0.77524 0.78202 1.17559 1.20522 1.20534 1.21069 1.00119 0.96340 0.94770 1.20323 0.91133 1.04641 1.00583 0.91813 0.92135 0.91454 0.91108 0.91188 0.93132 0.90883 0.92966 0.91215 0.93453 0.90203 0.89870 0.91380 0.89720 0.82093 0.82317 0.73933 0.75714 0.99471 0.99375 0.92250 0.86791 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.22 71.98 0.66 -0.96 16 2 C 0.04 0.55 5.71 86.30 0.49 1.04 16 3 N -0.55 -8.14 4.62 -896.21 -4.14 -12.29 16 4 C 0.05 0.56 5.50 86.30 0.48 1.04 16 5 C -0.15 -1.86 9.84 71.98 0.71 -1.15 16 6 C 0.05 0.62 5.17 86.30 0.45 1.07 16 7 C 0.06 0.76 4.80 71.98 0.35 1.10 16 8 O -0.31 -7.10 10.08 -93.39 -0.94 -8.05 16 9 C 0.11 2.78 6.69 22.50 0.15 2.93 16 10 C -0.18 -3.70 9.03 22.35 0.20 -3.50 16 11 C -0.10 -2.16 9.96 22.38 0.22 -1.94 16 12 C 0.11 3.38 6.30 38.10 0.24 3.62 16 13 N -0.67 -20.64 5.35 -317.05 -1.70 -22.33 16 14 C 0.69 29.31 8.41 179.05 1.51 30.82 16 15 O -0.63 -32.86 13.78 -3.99 -0.06 -32.91 16 16 N -0.72 -30.82 5.55 -482.30 -2.68 -33.50 16 17 C 0.28 15.79 5.43 85.63 0.46 16.25 16 18 C -0.55 -30.16 9.28 25.60 0.24 -29.92 16 19 H 0.09 4.18 7.60 -2.91 -0.02 4.15 16 20 C 0.00 0.17 5.46 84.66 0.46 0.63 16 21 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 22 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 23 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.10 -3.55 8.69 22.38 0.19 -3.36 16 27 C -0.15 -4.46 9.98 22.35 0.22 -4.24 16 28 H 0.06 0.46 6.18 -2.39 -0.01 0.45 16 29 H 0.06 0.52 6.44 -2.38 -0.02 0.50 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 1.02 6.81 -2.39 -0.02 1.00 16 32 H 0.07 0.99 6.17 -2.39 -0.01 0.98 16 33 H 0.05 0.49 5.86 -2.39 -0.01 0.47 16 34 H 0.07 0.85 7.83 -2.39 -0.02 0.83 16 35 H 0.05 0.66 6.96 -2.39 -0.02 0.64 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 0.58 6.08 -2.39 -0.01 0.57 16 39 H 0.08 1.02 7.87 -2.39 -0.02 1.00 16 40 H 0.07 0.86 5.75 -2.39 -0.01 0.84 16 41 H 0.08 0.80 7.67 -2.39 -0.02 0.79 16 42 H 0.16 2.05 6.29 -2.91 -0.02 2.03 16 43 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.42 9.19 8.84 -92.71 -0.82 8.37 16 45 H 0.41 14.15 8.34 -92.71 -0.77 13.37 16 46 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 47 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 49 H 0.11 4.72 6.22 -2.91 -0.02 4.70 16 50 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -76.51 399.04 -0.79 -77.30 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.62 Total: 30.14 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 7.03 Total: 13.44 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -8.23 Total: -124.27 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.00 Total: -40.96 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -76.51 -0.79 -77.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488251058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.031 kcal (2) G-P(sol) polarization free energy of solvation -76.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds