Wall clock time and date at job start Tue Mar 31 2020 18:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47559 * 12.36342 * 3 2 1 5 5 C 1.34774 * 120.00282 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00038 * 180.02562 * 5 4 3 8 8 C 1.53123 * 109.52034 * 299.68507 * 7 5 4 9 9 C 1.53046 * 109.27617 * 182.44003 * 8 7 5 10 10 N 1.46848 * 109.52229 * 59.18066 * 9 8 7 11 11 C 1.46891 * 111.00155 * 174.15941 * 10 9 8 12 12 H 1.09003 * 109.47790 * 168.02818 * 11 10 9 13 13 C 1.53001 * 109.47109 * 48.02787 * 11 10 9 14 14 C 1.50703 * 109.47339 * 288.03094 * 11 10 9 15 15 O 1.21278 * 119.99892 * 27.27063 * 14 11 10 16 16 N 1.34777 * 120.00161 * 207.27823 * 14 11 10 17 17 C 1.46503 * 119.99978 * 353.37932 * 16 14 11 18 18 C 1.46503 * 120.00151 * 173.37852 * 16 14 11 19 19 C 1.50697 * 109.46726 * 89.99632 * 18 16 14 20 20 H 1.08002 * 120.00317 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00154 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99305 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00589 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46555 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47118 * 119.99650 * 23 21 19 26 26 H 1.48496 * 109.47143 * 240.00096 * 23 21 19 27 27 C 1.46848 * 111.19655 * 298.25855 * 10 9 8 28 28 C 1.53034 * 109.52554 * 61.74401 * 27 10 9 29 29 H 4.40642 * 5.51403 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47347 * 252.36163 * 3 2 1 31 31 H 1.09002 * 109.47197 * 132.36314 * 3 2 1 32 32 H 0.97001 * 119.99638 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.57399 * 59.84668 * 7 5 4 34 34 H 1.08996 * 109.50786 * 302.37859 * 8 7 5 35 35 H 1.08996 * 109.50054 * 62.50492 * 8 7 5 36 36 H 1.09000 * 109.46023 * 299.16524 * 9 8 7 37 37 H 1.08996 * 109.45970 * 179.19414 * 9 8 7 38 38 H 1.09005 * 109.46944 * 292.50526 * 13 11 10 39 39 H 1.09001 * 109.47089 * 52.50354 * 13 11 10 40 40 H 1.09000 * 109.47249 * 172.50885 * 13 11 10 41 41 H 1.08996 * 109.47048 * 84.49550 * 17 16 14 42 42 H 1.09002 * 109.46989 * 204.49715 * 17 16 14 43 43 H 1.09004 * 109.46975 * 324.49648 * 17 16 14 44 44 H 1.08997 * 109.47335 * 209.99559 * 18 16 14 45 45 H 1.08998 * 109.47108 * 330.00424 * 18 16 14 46 46 H 0.97004 * 119.99502 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.46294 * 301.72123 * 27 10 9 48 48 H 1.09006 * 109.44800 * 181.75380 * 27 10 9 49 49 H 1.08999 * 109.50382 * 180.88014 * 28 27 10 50 50 H 1.09004 * 109.50560 * 60.76153 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3482 -0.2957 5 6 4.4602 -1.5881 -0.3489 6 8 5.2479 -0.6872 -0.1516 7 6 4.9632 -2.9756 -0.6537 8 6 4.4607 -3.9485 0.4166 9 6 5.0244 -5.3435 0.1359 10 7 6.4919 -5.2911 0.1466 11 6 7.0677 -6.6363 0.0183 12 1 8.1358 -6.5567 -0.1841 13 6 6.3841 -7.3759 -1.1336 14 6 6.8549 -7.3983 1.3009 15 8 5.9141 -7.1290 2.0173 16 7 7.7101 -8.3790 1.6520 17 6 8.7598 -8.8031 0.7222 18 6 7.5901 -9.0209 2.9634 19 6 6.6675 -10.2079 2.8591 20 1 6.2161 -10.4593 1.9107 21 6 6.3997 -10.9731 3.9743 22 7 6.9490 -10.6666 5.1293 23 14 5.2566 -12.4449 3.8449 24 1 4.7736 -12.5749 2.4467 25 1 5.9903 -13.6769 4.2312 26 1 4.0979 -12.2531 4.7536 27 6 6.9990 -4.3991 -0.9040 28 6 6.4944 -2.9761 -0.6544 29 1 -1.0498 -0.0005 0.0001 30 1 3.0092 0.3122 0.9794 31 1 3.0090 0.6933 -0.7593 32 1 2.5050 -2.0686 -0.4539 33 1 4.5984 -3.2896 -1.6317 34 1 4.7932 -3.6126 1.3987 35 1 3.3716 -3.9846 0.3930 36 1 4.6802 -5.6845 -0.8405 37 1 4.6801 -6.0356 0.9043 38 1 5.3443 -7.5731 -0.8725 39 1 6.4227 -6.7618 -2.0333 40 1 6.8983 -8.3196 -1.3154 41 1 9.6232 -8.1458 0.8247 42 1 9.0542 -9.8277 0.9494 43 1 8.3830 -8.7513 -0.2993 44 1 8.5733 -9.3531 3.2967 45 1 7.1848 -8.3078 3.6813 46 1 6.7603 -11.2047 5.9140 47 1 6.6457 -4.7446 -1.8755 48 1 8.0889 -4.4056 -0.8907 49 1 6.8581 -2.3174 -1.4430 50 1 6.8589 -2.6248 0.3109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491417024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:38 Heat of formation + Delta-G solvation = -8.627797 kcal Electronic energy + Delta-G solvation = -29384.361896 eV Core-core repulsion = 25413.367127 eV Total energy + Delta-G solvation = -3970.994769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56032 -39.59245 -37.83743 -35.81447 -34.78391 -34.29642 -32.92062 -32.53866 -30.87491 -30.00788 -27.80105 -27.54477 -26.02312 -25.11981 -23.67865 -23.17714 -21.96255 -20.74511 -19.67157 -18.94568 -18.34753 -17.17567 -16.58704 -16.48522 -16.26046 -15.94395 -15.73086 -14.95090 -14.77073 -14.54883 -14.51135 -14.39518 -14.01004 -13.83340 -13.54289 -13.32770 -13.24465 -12.89409 -12.59241 -12.25959 -12.14170 -12.05356 -11.83618 -11.60878 -11.51800 -11.45735 -11.22107 -11.14665 -10.93853 -10.90423 -10.84634 -10.66892 -10.56510 -10.51894 -10.11743 -9.86366 -9.58844 -9.41382 -8.78850 -8.42341 -8.03075 -7.58998 -6.02484 -4.06845 1.99782 2.31395 2.43508 3.19400 3.29812 3.36397 3.38608 3.41400 3.73785 3.82816 4.26377 4.41989 4.45587 4.63193 4.73774 4.98761 5.00191 5.11635 5.15019 5.20491 5.22999 5.25745 5.30899 5.32533 5.41982 5.47649 5.52004 5.59468 5.62099 5.71367 5.74280 5.88035 5.92497 5.95117 5.99431 6.10365 6.14209 6.23896 6.31529 6.36294 7.01524 7.05728 7.15522 7.17237 7.25777 7.47794 7.59063 7.93848 7.94261 8.25893 8.47177 8.93459 9.15911 9.58088 11.05532 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.002452 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.917619 B =11417.714534 C =12624.644624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.210 4.210 3 C 0.230 3.770 4 N -0.732 5.732 5 C 0.524 3.476 6 O -0.536 6.536 7 C -0.107 4.107 8 C -0.104 4.104 9 C 0.045 3.955 10 N -0.516 5.516 11 C 0.064 3.936 12 H 0.096 0.904 13 C -0.178 4.178 14 C 0.517 3.483 15 O -0.527 6.527 16 N -0.603 5.603 17 C 0.082 3.918 18 C 0.247 3.753 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.054 3.946 28 C -0.093 4.093 29 H 0.222 0.778 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.405 0.595 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.031 0.969 45 H 0.042 0.958 46 H 0.262 0.738 47 H 0.033 0.967 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 16.472 -16.607 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.211 4.211 3 C 0.107 3.893 4 N -0.385 5.385 5 C 0.311 3.689 6 O -0.412 6.412 7 C -0.128 4.128 8 C -0.142 4.142 9 C -0.082 4.082 10 N -0.241 5.241 11 C -0.048 4.048 12 H 0.114 0.886 13 C -0.237 4.237 14 C 0.302 3.698 15 O -0.403 6.403 16 N -0.336 5.336 17 C -0.062 4.062 18 C 0.128 3.872 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.074 4.074 28 C -0.131 4.131 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.239 0.761 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.102 17.406 -15.408 23.800 hybrid contribution -1.361 -1.559 -0.906 2.260 sum -6.463 15.847 -16.315 23.645 Atomic orbital electron populations 1.25048 0.95975 0.97265 1.00519 1.22938 0.94294 1.02792 1.01056 1.18061 0.83082 0.85314 1.02821 1.46043 1.07632 1.11207 1.73604 1.20799 0.81394 0.91001 0.75720 1.90707 1.55187 1.46554 1.48788 1.21459 0.98433 0.91682 1.01254 1.21590 0.99523 0.94340 0.98782 1.22428 0.86859 0.97323 1.01581 1.61784 1.07693 1.08103 1.46496 1.21684 1.00103 0.88921 0.94070 0.88607 1.22356 1.02402 1.01139 0.97759 1.20030 0.82789 0.80269 0.86669 1.90567 1.29420 1.66762 1.53557 1.48117 1.30589 1.35936 1.18973 1.21683 0.90663 1.01023 0.92868 1.19275 0.97107 0.92736 0.78083 1.21460 1.27925 1.11187 0.95481 0.92511 1.24945 0.96181 0.97945 0.95159 1.69949 1.44020 1.39661 0.99802 0.86461 0.80711 0.82249 0.78088 1.19881 1.21022 1.20910 1.22152 1.00134 0.92554 0.92514 1.21387 0.92064 0.95758 1.03926 0.76124 0.88993 0.89144 0.76081 0.88846 0.90223 0.91393 0.95105 0.86752 0.91450 0.92069 0.91286 0.93851 0.90585 0.92662 0.95058 0.93985 0.92817 0.94860 0.90392 0.90973 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 19.25 29.55 0.57 -0.53 16 2 C -0.21 -1.65 13.46 -37.12 -0.50 -2.15 16 3 C 0.23 1.88 6.15 -6.83 -0.04 1.84 16 4 N -0.73 -6.25 5.44 -63.16 -0.34 -6.59 16 5 C 0.52 5.72 7.16 -10.99 -0.08 5.64 16 6 O -0.54 -7.68 15.98 5.56 0.09 -7.60 16 7 C -0.11 -1.06 2.59 -91.65 -0.24 -1.29 16 8 C -0.10 -1.17 5.26 -26.64 -0.14 -1.31 16 9 C 0.05 0.61 4.25 -3.83 -0.02 0.60 16 10 N -0.52 -7.25 4.46 -228.08 -1.02 -8.27 16 11 C 0.06 0.94 1.89 -68.87 -0.13 0.81 16 12 H 0.10 1.24 6.89 -51.93 -0.36 0.88 16 13 C -0.18 -2.22 7.96 37.16 0.30 -1.92 16 14 C 0.52 10.52 6.80 -10.98 -0.07 10.45 16 15 O -0.53 -12.83 13.73 5.56 0.08 -12.76 16 16 N -0.60 -12.67 2.86 -182.95 -0.52 -13.19 16 17 C 0.08 1.27 9.60 59.85 0.57 1.85 16 18 C 0.25 6.46 5.09 -5.19 -0.03 6.43 16 19 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 23 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.05 0.59 5.22 -3.83 -0.02 0.57 16 28 C -0.09 -1.01 4.68 -26.65 -0.12 -1.14 16 29 H 0.22 0.68 7.80 -54.10 -0.42 0.25 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 2.72 7.94 -40.82 -0.32 2.40 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 36 H 0.03 0.37 6.74 -51.93 -0.35 0.02 16 37 H 0.11 1.99 5.54 -51.93 -0.29 1.70 16 38 H 0.07 0.94 6.92 -51.93 -0.36 0.58 16 39 H 0.06 0.62 6.85 -51.93 -0.36 0.26 16 40 H 0.07 0.83 6.40 -51.93 -0.33 0.49 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 43 H 0.05 0.71 5.40 -51.93 -0.28 0.43 16 44 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 45 H 0.04 1.24 7.52 -51.93 -0.39 0.85 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.03 0.32 6.98 -51.93 -0.36 -0.04 16 48 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -35.19 400.54 -8.31 -43.50 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.97 Total: 1.58 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.37 Total: 6.40 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -1.15 Total: -53.97 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.17 Total: -20.35 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.19 -8.31 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491417024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.873 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds