Wall clock time and date at job start Tue Mar 31 2020 18:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47559 * 12.36342 * 3 2 1 5 5 C 1.34774 * 120.00282 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00038 * 180.02562 * 5 4 3 8 8 C 1.53123 * 109.52034 * 299.68507 * 7 5 4 9 9 C 1.53046 * 109.27617 * 182.44003 * 8 7 5 10 10 N 1.46848 * 109.52229 * 59.18066 * 9 8 7 11 11 C 1.46891 * 111.00155 * 174.15941 * 10 9 8 12 12 H 1.09003 * 109.47790 * 168.02818 * 11 10 9 13 13 C 1.53001 * 109.47109 * 48.02787 * 11 10 9 14 14 C 1.50703 * 109.47339 * 288.03094 * 11 10 9 15 15 O 1.21278 * 119.99892 * 27.27063 * 14 11 10 16 16 N 1.34777 * 120.00161 * 207.27823 * 14 11 10 17 17 C 1.46503 * 119.99978 * 353.37932 * 16 14 11 18 18 C 1.46503 * 120.00151 * 173.37852 * 16 14 11 19 19 C 1.50697 * 109.46726 * 89.99632 * 18 16 14 20 20 H 1.08002 * 120.00317 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00154 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99305 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00589 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46555 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47118 * 119.99650 * 23 21 19 26 26 H 1.48496 * 109.47143 * 240.00096 * 23 21 19 27 27 C 1.46848 * 111.19655 * 298.25855 * 10 9 8 28 28 C 1.53034 * 109.52554 * 61.74401 * 27 10 9 29 29 H 4.40642 * 5.51403 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47347 * 252.36163 * 3 2 1 31 31 H 1.09002 * 109.47197 * 132.36314 * 3 2 1 32 32 H 0.97001 * 119.99638 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.57399 * 59.84668 * 7 5 4 34 34 H 1.08996 * 109.50786 * 302.37859 * 8 7 5 35 35 H 1.08996 * 109.50054 * 62.50492 * 8 7 5 36 36 H 1.09000 * 109.46023 * 299.16524 * 9 8 7 37 37 H 1.08996 * 109.45970 * 179.19414 * 9 8 7 38 38 H 1.09005 * 109.46944 * 292.50526 * 13 11 10 39 39 H 1.09001 * 109.47089 * 52.50354 * 13 11 10 40 40 H 1.09000 * 109.47249 * 172.50885 * 13 11 10 41 41 H 1.08996 * 109.47048 * 84.49550 * 17 16 14 42 42 H 1.09002 * 109.46989 * 204.49715 * 17 16 14 43 43 H 1.09004 * 109.46975 * 324.49648 * 17 16 14 44 44 H 1.08997 * 109.47335 * 209.99559 * 18 16 14 45 45 H 1.08998 * 109.47108 * 330.00424 * 18 16 14 46 46 H 0.97004 * 119.99502 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.46294 * 301.72123 * 27 10 9 48 48 H 1.09006 * 109.44800 * 181.75380 * 27 10 9 49 49 H 1.08999 * 109.50382 * 180.88014 * 28 27 10 50 50 H 1.09004 * 109.50560 * 60.76153 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3482 -0.2957 5 6 4.4602 -1.5881 -0.3489 6 8 5.2479 -0.6872 -0.1516 7 6 4.9632 -2.9756 -0.6537 8 6 4.4607 -3.9485 0.4166 9 6 5.0244 -5.3435 0.1359 10 7 6.4919 -5.2911 0.1466 11 6 7.0677 -6.6363 0.0183 12 1 8.1358 -6.5567 -0.1841 13 6 6.3841 -7.3759 -1.1336 14 6 6.8549 -7.3983 1.3009 15 8 5.9141 -7.1290 2.0173 16 7 7.7101 -8.3790 1.6520 17 6 8.7598 -8.8031 0.7222 18 6 7.5901 -9.0209 2.9634 19 6 6.6675 -10.2079 2.8591 20 1 6.2161 -10.4593 1.9107 21 6 6.3997 -10.9731 3.9743 22 7 6.9490 -10.6666 5.1293 23 14 5.2566 -12.4449 3.8449 24 1 4.7736 -12.5749 2.4467 25 1 5.9903 -13.6769 4.2312 26 1 4.0979 -12.2531 4.7536 27 6 6.9990 -4.3991 -0.9040 28 6 6.4944 -2.9761 -0.6544 29 1 -1.0498 -0.0005 0.0001 30 1 3.0092 0.3122 0.9794 31 1 3.0090 0.6933 -0.7593 32 1 2.5050 -2.0686 -0.4539 33 1 4.5984 -3.2896 -1.6317 34 1 4.7932 -3.6126 1.3987 35 1 3.3716 -3.9846 0.3930 36 1 4.6802 -5.6845 -0.8405 37 1 4.6801 -6.0356 0.9043 38 1 5.3443 -7.5731 -0.8725 39 1 6.4227 -6.7618 -2.0333 40 1 6.8983 -8.3196 -1.3154 41 1 9.6232 -8.1458 0.8247 42 1 9.0542 -9.8277 0.9494 43 1 8.3830 -8.7513 -0.2993 44 1 8.5733 -9.3531 3.2967 45 1 7.1848 -8.3078 3.6813 46 1 6.7603 -11.2047 5.9140 47 1 6.6457 -4.7446 -1.8755 48 1 8.0889 -4.4056 -0.8907 49 1 6.8581 -2.3174 -1.4430 50 1 6.8589 -2.6248 0.3109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491417024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:37 Heat of formation + Delta-G solvation = -34.552360 kcal Electronic energy + Delta-G solvation = -29385.486070 eV Core-core repulsion = 25413.367127 eV Total energy + Delta-G solvation = -3972.118942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56118 -40.82246 -39.05722 -36.58619 -36.48193 -35.41657 -34.61370 -33.53838 -31.78822 -31.16102 -29.55251 -28.35868 -27.41990 -26.28076 -25.26321 -24.12582 -23.38478 -21.66162 -20.57969 -19.84934 -19.55376 -18.65116 -17.94341 -17.88711 -17.31225 -17.10855 -16.60810 -16.52754 -16.10404 -15.81682 -15.63188 -15.32599 -15.29091 -14.79033 -14.57829 -14.33606 -14.22061 -14.11505 -13.90789 -13.80372 -13.47521 -13.23102 -13.17098 -13.07185 -12.87868 -12.67829 -12.60333 -12.44918 -12.36420 -12.16664 -11.89107 -11.80877 -11.65802 -11.60281 -11.49845 -11.44011 -10.78910 -10.64026 -10.25785 -10.15635 -9.35366 -9.09302 -8.20459 -6.35236 1.36234 1.38559 1.40086 1.50385 1.55076 1.80458 1.89710 2.27717 2.44485 2.51269 3.08256 3.08914 3.32414 3.59726 3.69955 3.82645 3.86712 4.05467 4.14817 4.28195 4.32496 4.39632 4.40781 4.46926 4.53393 4.54135 4.65844 4.68067 4.75064 4.77469 4.83300 4.94079 4.96131 4.97876 5.04829 5.07231 5.17458 5.21341 5.23268 5.25786 5.26852 5.43235 5.60242 5.88979 6.07362 6.09735 6.28964 6.43255 6.54775 6.73255 6.87773 7.14200 7.31264 7.58921 8.86441 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.002452 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.917619 B =11417.714534 C =12624.644624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.249 4.249 3 C 0.230 3.770 4 N -0.720 5.720 5 C 0.523 3.477 6 O -0.576 6.576 7 C -0.097 4.097 8 C -0.097 4.097 9 C 0.050 3.950 10 N -0.543 5.543 11 C 0.078 3.922 12 H 0.121 0.879 13 C -0.171 4.171 14 C 0.504 3.496 15 O -0.580 6.580 16 N -0.614 5.614 17 C 0.077 3.923 18 C 0.262 3.738 19 C -0.534 4.534 20 H 0.053 0.947 21 C 0.004 3.996 22 N -0.931 5.931 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.270 1.270 26 H -0.283 1.283 27 C 0.059 3.941 28 C -0.091 4.091 29 H 0.253 0.747 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.021 0.979 45 H -0.008 1.008 46 H 0.266 0.734 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 16.149 -20.103 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.249 4.249 3 C 0.108 3.892 4 N -0.373 5.373 5 C 0.311 3.689 6 O -0.455 6.455 7 C -0.118 4.118 8 C -0.135 4.135 9 C -0.077 4.077 10 N -0.268 5.268 11 C -0.033 4.033 12 H 0.139 0.861 13 C -0.229 4.229 14 C 0.292 3.708 15 O -0.459 6.459 16 N -0.346 5.346 17 C -0.065 4.065 18 C 0.141 3.859 19 C -0.573 4.573 20 H 0.071 0.929 21 C -0.195 4.195 22 N -0.571 5.571 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.209 1.209 27 C -0.068 4.068 28 C -0.129 4.129 29 H 0.269 0.731 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.251 0.749 33 H 0.144 0.856 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.039 0.961 45 H 0.011 0.989 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.966 17.078 -18.954 26.201 hybrid contribution -1.127 -1.387 0.236 1.803 sum -7.094 15.691 -18.718 25.434 Atomic orbital electron populations 1.25854 0.96726 0.95367 0.98639 1.23012 0.94538 1.04552 1.02790 1.17993 0.83849 0.85019 1.02366 1.45976 1.07141 1.11829 1.72310 1.20983 0.81758 0.91003 0.75185 1.90692 1.56279 1.47758 1.50774 1.21407 0.97882 0.90461 1.02050 1.21494 1.00722 0.93601 0.97685 1.22253 0.86954 0.97321 1.01196 1.61678 1.08006 1.08247 1.48839 1.21579 1.01899 0.88798 0.91066 0.86077 1.22326 1.00926 1.01891 0.97790 1.21242 0.81519 0.79811 0.88234 1.90552 1.31590 1.68073 1.55727 1.48165 1.32253 1.36147 1.18004 1.21969 0.90208 1.01088 0.93273 1.18707 0.95708 0.91248 0.80281 1.21706 1.28311 1.11852 0.95451 0.92888 1.25890 0.97757 1.01088 0.94716 1.70073 1.45364 1.41051 1.00597 0.85360 0.78368 0.78686 0.78333 1.18982 1.19487 1.20876 1.22206 1.00756 0.91334 0.92491 1.21348 0.92697 0.96164 1.02721 0.73096 0.90002 0.89010 0.74866 0.85602 0.93498 0.89304 0.92709 0.91235 0.93366 0.88491 0.90501 0.91144 0.91403 0.89151 0.96076 0.98945 0.92504 0.92107 0.89330 0.89662 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 19.25 74.32 1.43 -0.17 16 2 C -0.25 -3.64 13.46 31.12 0.42 -3.22 16 3 C 0.23 3.74 6.15 84.57 0.52 4.26 16 4 N -0.72 -11.70 5.44 -472.14 -2.57 -14.27 16 5 C 0.52 11.09 7.16 87.66 0.63 11.71 16 6 O -0.58 -16.66 15.98 -3.04 -0.05 -16.71 16 7 C -0.10 -1.74 2.59 -11.46 -0.03 -1.77 16 8 C -0.10 -2.15 5.26 30.65 0.16 -1.99 16 9 C 0.05 1.33 4.25 86.33 0.37 1.70 16 10 N -0.54 -14.57 4.46 -875.51 -3.90 -18.48 16 11 C 0.08 2.15 1.89 44.17 0.08 2.24 16 12 H 0.12 2.70 6.89 -2.39 -0.02 2.69 16 13 C -0.17 -3.69 7.96 71.98 0.57 -3.11 16 14 C 0.50 20.89 6.80 87.66 0.60 21.49 16 15 O -0.58 -29.94 13.73 -3.02 -0.04 -29.98 16 16 N -0.61 -26.17 2.86 -851.12 -2.43 -28.61 16 17 C 0.08 2.25 9.60 127.77 1.23 3.48 16 18 C 0.26 14.40 5.09 85.63 0.44 14.83 16 19 C -0.53 -31.06 9.39 25.60 0.24 -30.82 16 20 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 23 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 27 C 0.06 1.10 5.22 86.32 0.45 1.55 16 28 C -0.09 -1.83 4.68 30.65 0.14 -1.69 16 29 H 0.25 0.72 7.80 -4.43 -0.03 0.69 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.41 4.93 7.94 -92.71 -0.74 4.20 16 33 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.54 7.66 -2.39 -0.02 1.52 16 36 H 0.05 1.16 6.74 -2.39 -0.02 1.15 16 37 H 0.07 2.53 5.54 -2.39 -0.01 2.52 16 38 H 0.05 1.24 6.92 -2.38 -0.02 1.23 16 39 H 0.10 1.44 6.85 -2.39 -0.02 1.42 16 40 H 0.08 1.54 6.40 -2.39 -0.02 1.53 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 43 H 0.09 2.01 5.40 -2.38 -0.01 2.00 16 44 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 45 H -0.01 -0.49 7.52 -2.39 -0.02 -0.50 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.06 0.84 6.98 -2.39 -0.02 0.82 16 48 H 0.09 1.48 7.96 -2.38 -0.02 1.46 16 49 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.05 1.34 8.04 -2.38 -0.02 1.32 16 Total: -1.00 -82.88 400.54 1.23 -81.65 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.20 Total: 16.82 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 7.71 Total: 19.18 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -8.62 Total: -118.20 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.09 Total: -46.70 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -82.88 1.23 -81.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491417024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.103 kcal (2) G-P(sol) polarization free energy of solvation -82.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds