Wall clock time and date at job start Tue Mar 31 2020 19:31:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46503 * 109.47530 * 2 1
4 4 C 1.46499 * 119.99930 * 264.70025 * 3 2 1
5 5 C 1.50697 * 109.46930 * 274.97306 * 4 3 2
6 6 O 1.34303 * 125.78991 * 83.54618 * 5 4 3
7 7 C 1.34307 * 109.47583 * 179.82296 * 6 5 4
8 8 C 1.34519 * 108.41826 * 0.43730 * 7 6 5
9 9 C 1.34514 * 125.79028 * 263.84660 * 5 4 3
10 10 C 1.50704 * 126.57676 * 0.03906 * 9 5 4
11 11 C 1.34776 * 119.99874 * 84.69801 * 3 2 1
12 12 O 1.21587 * 119.99892 * 180.02562 * 11 3 2
13 13 N 1.34776 * 119.99962 * 359.72347 * 11 3 2
14 14 C 1.46503 * 119.99657 * 179.97438 * 13 11 3
15 15 C 1.53037 * 109.46187 * 275.03229 * 14 13 11
16 16 C 1.53198 * 109.30996 * 178.60463 * 15 14 13
17 17 N 1.46926 * 108.76549 * 54.65403 * 16 15 14
18 18 C 1.36934 * 120.63188 * 126.40806 * 17 16 15
19 19 H 1.08010 * 119.99831 * 328.44301 * 18 17 16
20 20 C 1.38811 * 120.00468 * 148.43493 * 18 17 16
21 21 N 1.31620 * 119.99580 * 347.34994 * 20 18 17
22 22 Si 1.86802 * 119.99990 * 167.33903 * 20 18 17
23 23 H 1.48499 * 109.46875 * 60.00714 * 22 20 18
24 24 H 1.48497 * 109.47021 * 180.02562 * 22 20 18
25 25 H 1.48496 * 109.47664 * 300.00782 * 22 20 18
26 26 C 1.46925 * 118.73902 * 306.38055 * 17 16 15
27 27 C 1.53042 * 109.45489 * 154.97528 * 14 13 11
28 28 H 1.09004 * 109.47288 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47284 * 300.00520 * 1 2 3
30 30 H 1.09008 * 109.46932 * 60.00078 * 1 2 3
31 31 H 1.09000 * 109.47516 * 239.99926 * 2 1 3
32 32 H 1.09002 * 109.47348 * 119.99814 * 2 1 3
33 33 H 1.09005 * 109.46993 * 34.97087 * 4 3 2
34 34 H 1.09005 * 109.47088 * 154.97163 * 4 3 2
35 35 H 1.07992 * 125.79153 * 180.13672 * 7 6 5
36 36 H 1.07999 * 126.57734 * 179.72015 * 8 7 6
37 37 H 1.09000 * 109.47072 * 84.97458 * 10 9 5
38 38 H 1.08995 * 109.47188 * 204.97093 * 10 9 5
39 39 H 1.09003 * 109.47447 * 324.97793 * 10 9 5
40 40 H 0.96999 * 120.00329 * 0.02562 * 13 11 3
41 41 H 1.09004 * 109.45943 * 35.01058 * 14 13 11
42 42 H 1.08994 * 109.49731 * 298.56239 * 15 14 13
43 43 H 1.08995 * 109.49977 * 58.66707 * 15 14 13
44 44 H 1.09003 * 109.59670 * 294.86329 * 16 15 14
45 45 H 1.08998 * 109.69988 * 174.50731 * 16 15 14
46 46 H 0.97000 * 119.99403 * 179.97438 * 21 20 18
47 47 H 1.09000 * 109.59193 * 293.82449 * 26 17 16
48 48 H 1.09005 * 109.70254 * 173.46761 * 26 17 16
49 49 H 1.08997 * 109.50203 * 301.33918 * 27 14 13
50 50 H 1.08996 * 109.49797 * 61.40856 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3731 2.0327 -1.2633
5 6 3.7932 1.6837 -1.6270
6 8 4.1903 0.5681 -2.2606
7 6 5.5234 0.5947 -2.4214
8 6 5.9942 1.7322 -1.8791
9 6 4.8790 2.4341 -1.3671
10 6 4.9021 3.7670 -0.6642
11 6 2.1414 2.0525 1.1622
12 8 2.5463 3.1989 1.1622
13 7 1.8097 1.4550 2.3239
14 6 1.9439 2.1845 3.5872
15 6 3.3802 2.0563 4.0999
16 6 3.5257 2.8491 5.4027
17 7 2.5029 2.3897 6.3523
18 6 2.8541 1.9737 7.6088
19 1 3.8099 1.4983 7.7728
20 6 1.9817 2.1632 8.6718
21 7 0.9384 2.9537 8.5339
22 14 2.2884 1.2961 10.2977
23 1 3.6079 1.7104 10.8384
24 1 1.2206 1.6617 11.2627
25 1 2.2802 -0.1735 10.0843
26 6 1.0962 2.3857 5.9283
27 6 0.9780 1.5983 4.6195
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8901
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.7016 1.6893 -2.0503
34 1 2.2812 3.1133 -1.1532
35 1 6.1172 -0.1698 -2.9001
36 1 7.0262 2.0483 -1.8418
37 1 4.9321 3.6088 0.4138
38 1 5.7851 4.3259 -0.9740
39 1 4.0058 4.3304 -0.9239
40 1 1.4829 0.5417 2.3236
41 1 1.7084 3.2365 3.4259
42 1 3.6080 1.0067 4.2853
43 1 4.0694 2.4526 3.3543
44 1 3.3869 3.9114 5.2017
45 1 4.5169 2.6836 5.8248
46 1 0.3286 3.0858 9.2767
47 1 0.7592 3.4101 5.7701
48 1 0.4825 1.9135 6.6955
49 1 -0.0427 1.6685 4.2436
50 1 1.2283 0.5529 4.7994
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591155662.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:31:13
Heat of formation + Delta-G solvation = 6.293680 kcal
Electronic energy + Delta-G solvation = -30200.221160 eV
Core-core repulsion = 26229.873435 eV
Total energy + Delta-G solvation = -3970.347725 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.68730 -40.21139 -37.62776 -35.98038 -34.61276 -34.08916 -32.30168 -31.57383
-30.21945 -29.94002 -29.29216 -27.82917 -25.68035 -24.71790 -23.55339 -22.20420
-21.87882 -21.52640 -20.08434 -19.66502 -19.14586 -17.96859 -17.06273 -16.88249
-16.61429 -15.90817 -15.43067 -14.92125 -14.57636 -14.40816 -14.16755 -14.10998
-13.79367 -13.57495 -13.47320 -13.06526 -12.97817 -12.89995 -12.79976 -12.56558
-12.41359 -12.34985 -12.24116 -11.86182 -11.49533 -11.43616 -11.38201 -11.04966
-10.79929 -10.71722 -10.46215 -10.24337 -10.02081 -9.95071 -9.75055 -9.67308
-9.50623 -8.99550 -8.57385 -8.46195 -8.40293 -6.60695 -5.77839 -3.24444
1.51400 2.40615 2.83972 2.90231 3.38824 3.40006 3.44127 3.45218
4.02043 4.50154 4.54269 4.67464 4.76007 4.86084 4.92425 5.07032
5.17059 5.34489 5.37845 5.43903 5.45782 5.49513 5.54170 5.55063
5.65736 5.71336 5.80757 5.91103 5.93013 5.95633 6.10847 6.12407
6.16713 6.29573 6.33016 6.40226 6.52053 6.56074 6.62394 6.65116
6.83944 6.89622 7.02760 7.05318 7.12439 7.34847 7.64711 7.80447
8.08619 8.49014 8.75951 9.23576 9.85236 10.44339 11.30958
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.018436 B = 0.002698 C = 0.002539
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1518.417774 B =10373.826811 C =11025.735915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.106 3.894
3 N -0.629 5.629
4 C 0.217 3.783
5 C -0.044 4.044
6 O -0.177 6.177
7 C -0.041 4.041
8 C -0.214 4.214
9 C -0.148 4.148
10 C -0.079 4.079
11 C 0.706 3.294
12 O -0.582 6.582
13 N -0.737 5.737
14 C 0.169 3.831
15 C -0.138 4.138
16 C 0.148 3.852
17 N -0.592 5.592
18 C -0.254 4.254
19 H 0.063 0.937
20 C 0.005 3.995
21 N -0.904 5.904
22 Si 0.904 3.096
23 H -0.282 1.282
24 H -0.290 1.290
25 H -0.284 1.284
26 C 0.177 3.823
27 C -0.146 4.146
28 H 0.067 0.933
29 H 0.061 0.939
30 H 0.059 0.941
31 H 0.081 0.919
32 H 0.073 0.927
33 H 0.087 0.913
34 H 0.117 0.883
35 H 0.200 0.800
36 H 0.145 0.855
37 H 0.077 0.923
38 H 0.056 0.944
39 H 0.067 0.933
40 H 0.390 0.610
41 H 0.082 0.918
42 H 0.055 0.945
43 H 0.054 0.946
44 H 0.020 0.980
45 H 0.054 0.946
46 H 0.255 0.745
47 H 0.021 0.979
48 H 0.089 0.911
49 H 0.053 0.947
50 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.224 -6.281 -23.461 24.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.018 4.018
3 N -0.367 5.367
4 C 0.094 3.906
5 C -0.095 4.095
6 O -0.073 6.073
7 C -0.109 4.109
8 C -0.233 4.233
9 C -0.151 4.151
10 C -0.136 4.136
11 C 0.407 3.593
12 O -0.459 6.459
13 N -0.391 5.391
14 C 0.065 3.935
15 C -0.179 4.179
16 C 0.021 3.979
17 N -0.315 5.315
18 C -0.383 4.383
19 H 0.081 0.919
20 C -0.194 4.194
21 N -0.548 5.548
22 Si 0.734 3.266
23 H -0.209 1.209
24 H -0.216 1.216
25 H -0.210 1.210
26 C 0.051 3.949
27 C -0.186 4.186
28 H 0.086 0.914
29 H 0.080 0.920
30 H 0.078 0.922
31 H 0.100 0.900
32 H 0.091 0.909
33 H 0.105 0.895
34 H 0.135 0.865
35 H 0.217 0.783
36 H 0.163 0.837
37 H 0.095 0.905
38 H 0.075 0.925
39 H 0.086 0.914
40 H 0.225 0.775
41 H 0.100 0.900
42 H 0.073 0.927
43 H 0.072 0.928
44 H 0.038 0.962
45 H 0.073 0.927
46 H 0.065 0.935
47 H 0.039 0.961
48 H 0.107 0.893
49 H 0.071 0.929
50 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 2.176 -5.589 -23.362 24.120
hybrid contribution 0.335 -1.038 0.796 1.350
sum 2.512 -6.627 -22.566 23.653
Atomic orbital electron populations
1.22247 0.95615 1.02404 1.02933 1.21490 0.94426 0.82644 1.03206
1.47263 1.69781 1.14373 1.05289 1.19582 0.86501 0.99743 0.84810
1.22798 0.97683 0.86877 1.02176 1.83981 1.23579 1.38734 1.60989
1.23942 0.81138 1.00736 1.05127 1.21777 1.00064 0.96553 1.04944
1.20409 0.91913 0.99654 1.03085 1.20187 1.01746 0.91267 1.00369
1.15947 0.78460 0.84602 0.80244 1.90896 1.52759 1.16508 1.85778
1.45696 1.70284 1.17513 1.05612 1.20909 0.96005 0.96352 0.80242
1.22378 0.95787 1.01034 0.98661 1.20879 0.93409 0.94865 0.88713
1.44038 1.01458 1.74868 1.11146 1.19131 1.03454 1.31769 0.83995
0.91904 1.25159 0.98773 0.97909 0.97578 1.69980 1.15983 1.37370
1.31515 0.86351 0.77353 0.79441 0.83464 1.20855 1.21623 1.21029
1.20705 0.86695 0.96279 0.91242 1.22550 0.96939 1.01111 0.98030
0.91385 0.91951 0.92179 0.90031 0.90914 0.89474 0.86469 0.78349
0.83672 0.90475 0.92459 0.91402 0.77491 0.90006 0.92664 0.92776
0.96187 0.92704 0.93540 0.96077 0.89291 0.92856 0.92387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.31 10.13 37.15 0.38 -0.93 16
2 C 0.11 0.92 5.81 -4.04 -0.02 0.90 16
3 N -0.63 -7.25 2.47 -180.80 -0.45 -7.70 16
4 C 0.22 2.30 5.82 -5.20 -0.03 2.27 16
5 C -0.04 -0.53 6.90 -35.63 -0.25 -0.77 16
6 O -0.18 -1.98 10.65 5.70 0.06 -1.92 16
7 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16
8 C -0.21 -2.32 10.87 -39.70 -0.43 -2.75 16
9 C -0.15 -1.86 6.16 -104.74 -0.65 -2.50 16
10 C -0.08 -0.99 9.35 36.01 0.34 -0.65 16
11 C 0.71 10.55 8.21 -86.92 -0.71 9.84 16
12 O -0.58 -10.44 14.12 5.29 0.07 -10.37 16
13 N -0.74 -10.70 4.94 -58.63 -0.29 -10.99 16
14 C 0.17 2.97 2.42 -67.89 -0.16 2.81 16
15 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16
16 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16
17 N -0.59 -14.90 2.98 -172.31 -0.51 -15.41 16
18 C -0.25 -6.97 9.57 -15.06 -0.14 -7.11 16
19 H 0.06 1.70 7.86 -52.48 -0.41 1.29 16
20 C 0.00 0.13 5.00 -17.43 -0.09 0.04 16
21 N -0.90 -26.12 11.18 55.49 0.62 -25.50 16
22 Si 0.90 21.60 29.57 -169.99 -5.03 16.58 16
23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
26 C 0.18 4.17 5.25 -3.71 -0.02 4.15 16
27 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16
28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
29 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16
30 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16
31 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16
32 H 0.07 0.63 6.67 -51.93 -0.35 0.29 16
33 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16
34 H 0.12 1.33 6.22 -51.93 -0.32 1.01 16
35 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16
36 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16
37 H 0.08 1.15 7.53 -51.93 -0.39 0.75 16
38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
39 H 0.07 0.83 7.24 -51.93 -0.38 0.46 16
40 H 0.39 4.80 6.19 -40.82 -0.25 4.55 16
41 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16
42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16
46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
48 H 0.09 2.32 6.19 -51.93 -0.32 2.00 16
49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
50 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
LS Contribution 397.71 15.07 5.99 5.99
Total: -1.00 -32.07 397.71 -9.55 -41.62
By element:
Atomic # 1 Polarization: 13.07 SS G_CDS: -8.26 Total: 4.81 kcal
Atomic # 6 Polarization: 4.65 SS G_CDS: -1.76 Total: 2.89 kcal
Atomic # 7 Polarization: -58.97 SS G_CDS: -0.63 Total: -59.60 kcal
Atomic # 8 Polarization: -12.43 SS G_CDS: 0.14 Total: -12.29 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -32.07 -9.55 -41.62 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591155662.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.917 kcal
(2) G-P(sol) polarization free energy of solvation -32.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.843 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds