Wall clock time and date at job start Tue Mar 31 2020 19:31:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46503 * 109.47530 * 2 1
4 4 C 1.46499 * 119.99930 * 264.70025 * 3 2 1
5 5 C 1.50697 * 109.46930 * 274.97306 * 4 3 2
6 6 O 1.34303 * 125.78991 * 83.54618 * 5 4 3
7 7 C 1.34307 * 109.47583 * 179.82296 * 6 5 4
8 8 C 1.34519 * 108.41826 * 0.43730 * 7 6 5
9 9 C 1.34514 * 125.79028 * 263.84660 * 5 4 3
10 10 C 1.50704 * 126.57676 * 0.03906 * 9 5 4
11 11 C 1.34776 * 119.99874 * 84.69801 * 3 2 1
12 12 O 1.21587 * 119.99892 * 180.02562 * 11 3 2
13 13 N 1.34776 * 119.99962 * 359.72347 * 11 3 2
14 14 C 1.46503 * 119.99657 * 179.97438 * 13 11 3
15 15 C 1.53037 * 109.46187 * 275.03229 * 14 13 11
16 16 C 1.53198 * 109.30996 * 178.60463 * 15 14 13
17 17 N 1.46926 * 108.76549 * 54.65403 * 16 15 14
18 18 C 1.36934 * 120.63188 * 126.40806 * 17 16 15
19 19 H 1.08010 * 119.99831 * 328.44301 * 18 17 16
20 20 C 1.38811 * 120.00468 * 148.43493 * 18 17 16
21 21 N 1.31620 * 119.99580 * 347.34994 * 20 18 17
22 22 Si 1.86802 * 119.99990 * 167.33903 * 20 18 17
23 23 H 1.48499 * 109.46875 * 60.00714 * 22 20 18
24 24 H 1.48497 * 109.47021 * 180.02562 * 22 20 18
25 25 H 1.48496 * 109.47664 * 300.00782 * 22 20 18
26 26 C 1.46925 * 118.73902 * 306.38055 * 17 16 15
27 27 C 1.53042 * 109.45489 * 154.97528 * 14 13 11
28 28 H 1.09004 * 109.47288 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47284 * 300.00520 * 1 2 3
30 30 H 1.09008 * 109.46932 * 60.00078 * 1 2 3
31 31 H 1.09000 * 109.47516 * 239.99926 * 2 1 3
32 32 H 1.09002 * 109.47348 * 119.99814 * 2 1 3
33 33 H 1.09005 * 109.46993 * 34.97087 * 4 3 2
34 34 H 1.09005 * 109.47088 * 154.97163 * 4 3 2
35 35 H 1.07992 * 125.79153 * 180.13672 * 7 6 5
36 36 H 1.07999 * 126.57734 * 179.72015 * 8 7 6
37 37 H 1.09000 * 109.47072 * 84.97458 * 10 9 5
38 38 H 1.08995 * 109.47188 * 204.97093 * 10 9 5
39 39 H 1.09003 * 109.47447 * 324.97793 * 10 9 5
40 40 H 0.96999 * 120.00329 * 0.02562 * 13 11 3
41 41 H 1.09004 * 109.45943 * 35.01058 * 14 13 11
42 42 H 1.08994 * 109.49731 * 298.56239 * 15 14 13
43 43 H 1.08995 * 109.49977 * 58.66707 * 15 14 13
44 44 H 1.09003 * 109.59670 * 294.86329 * 16 15 14
45 45 H 1.08998 * 109.69988 * 174.50731 * 16 15 14
46 46 H 0.97000 * 119.99403 * 179.97438 * 21 20 18
47 47 H 1.09000 * 109.59193 * 293.82449 * 26 17 16
48 48 H 1.09005 * 109.70254 * 173.46761 * 26 17 16
49 49 H 1.08997 * 109.50203 * 301.33918 * 27 14 13
50 50 H 1.08996 * 109.49797 * 61.40856 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3731 2.0327 -1.2633
5 6 3.7932 1.6837 -1.6270
6 8 4.1903 0.5681 -2.2606
7 6 5.5234 0.5947 -2.4214
8 6 5.9942 1.7322 -1.8791
9 6 4.8790 2.4341 -1.3671
10 6 4.9021 3.7670 -0.6642
11 6 2.1414 2.0525 1.1622
12 8 2.5463 3.1989 1.1622
13 7 1.8097 1.4550 2.3239
14 6 1.9439 2.1845 3.5872
15 6 3.3802 2.0563 4.0999
16 6 3.5257 2.8491 5.4027
17 7 2.5029 2.3897 6.3523
18 6 2.8541 1.9737 7.6088
19 1 3.8099 1.4983 7.7728
20 6 1.9817 2.1632 8.6718
21 7 0.9384 2.9537 8.5339
22 14 2.2884 1.2961 10.2977
23 1 3.6079 1.7104 10.8384
24 1 1.2206 1.6617 11.2627
25 1 2.2802 -0.1735 10.0843
26 6 1.0962 2.3857 5.9283
27 6 0.9780 1.5983 4.6195
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8901
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.7016 1.6893 -2.0503
34 1 2.2812 3.1133 -1.1532
35 1 6.1172 -0.1698 -2.9001
36 1 7.0262 2.0483 -1.8418
37 1 4.9321 3.6088 0.4138
38 1 5.7851 4.3259 -0.9740
39 1 4.0058 4.3304 -0.9239
40 1 1.4829 0.5417 2.3236
41 1 1.7084 3.2365 3.4259
42 1 3.6080 1.0067 4.2853
43 1 4.0694 2.4526 3.3543
44 1 3.3869 3.9114 5.2017
45 1 4.5169 2.6836 5.8248
46 1 0.3286 3.0858 9.2767
47 1 0.7592 3.4101 5.7701
48 1 0.4825 1.9135 6.6955
49 1 -0.0427 1.6685 4.2436
50 1 1.2283 0.5529 4.7994
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591155662.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:31:12
Heat of formation + Delta-G solvation = -11.895180 kcal
Electronic energy + Delta-G solvation = -30201.009888 eV
Core-core repulsion = 26229.873435 eV
Total energy + Delta-G solvation = -3971.136453 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-43.50658 -41.36811 -39.20671 -37.07384 -36.06559 -35.09104 -33.92356 -32.59696
-31.74643 -31.22290 -30.67906 -28.83312 -27.05721 -26.10958 -24.46679 -23.89901
-23.43625 -22.38001 -21.19519 -21.07022 -20.32658 -19.19483 -18.48415 -17.89599
-17.79795 -17.01247 -16.74537 -16.40452 -15.93573 -15.54087 -15.36048 -15.27390
-15.18325 -14.84711 -14.73590 -14.58080 -14.23060 -14.04563 -14.00061 -13.69503
-13.52984 -13.29424 -13.20926 -13.03622 -12.95222 -12.67427 -12.59408 -12.54732
-12.32745 -12.22528 -12.05602 -12.00891 -11.88048 -11.55025 -11.34302 -11.10157
-10.55713 -10.53106 -10.11932 -9.66983 -9.30430 -8.65149 -7.87273 -5.37867
0.67544 1.48853 1.50290 1.54271 1.57649 1.87363 2.01075 2.30780
2.51761 2.97009 3.29872 3.66984 3.77384 3.90162 3.98592 4.00241
4.05144 4.07747 4.19535 4.35233 4.35358 4.46310 4.51806 4.55572
4.65189 4.65493 4.80190 4.82193 4.84743 4.87411 4.88596 4.95268
4.98084 5.03488 5.07196 5.16658 5.24092 5.29300 5.30701 5.36265
5.46718 5.49740 5.62607 5.63860 5.64839 5.71057 5.92844 6.24071
6.41252 6.99064 7.15786 7.60872 7.83540 8.38401 9.19467
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.018436 B = 0.002698 C = 0.002539
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1518.417774 B =10373.826811 C =11025.735915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.102 3.898
3 N -0.622 5.622
4 C 0.216 3.784
5 C -0.052 4.052
6 O -0.180 6.180
7 C -0.029 4.029
8 C -0.235 4.235
9 C -0.175 4.175
10 C -0.070 4.070
11 C 0.701 3.299
12 O -0.617 6.617
13 N -0.727 5.727
14 C 0.183 3.817
15 C -0.121 4.121
16 C 0.147 3.853
17 N -0.608 5.608
18 C -0.268 4.268
19 H 0.065 0.935
20 C -0.046 4.046
21 N -0.935 5.935
22 Si 0.971 3.029
23 H -0.277 1.277
24 H -0.293 1.293
25 H -0.275 1.275
26 C 0.183 3.817
27 C -0.127 4.127
28 H 0.087 0.913
29 H 0.046 0.954
30 H 0.063 0.937
31 H 0.097 0.903
32 H 0.075 0.925
33 H 0.118 0.882
34 H 0.104 0.896
35 H 0.240 0.760
36 H 0.159 0.841
37 H 0.047 0.953
38 H 0.069 0.931
39 H 0.062 0.938
40 H 0.405 0.595
41 H 0.058 0.942
42 H 0.060 0.940
43 H 0.054 0.946
44 H 0.007 0.993
45 H 0.055 0.945
46 H 0.251 0.749
47 H -0.005 1.005
48 H 0.061 0.939
49 H 0.076 0.924
50 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.533 -8.894 -25.276 26.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.020 4.020
3 N -0.358 5.358
4 C 0.093 3.907
5 C -0.103 4.103
6 O -0.076 6.076
7 C -0.096 4.096
8 C -0.255 4.255
9 C -0.177 4.177
10 C -0.127 4.127
11 C 0.403 3.597
12 O -0.497 6.497
13 N -0.383 5.383
14 C 0.078 3.922
15 C -0.161 4.161
16 C 0.021 3.979
17 N -0.332 5.332
18 C -0.398 4.398
19 H 0.082 0.918
20 C -0.242 4.242
21 N -0.581 5.581
22 Si 0.798 3.202
23 H -0.203 1.203
24 H -0.219 1.219
25 H -0.200 1.200
26 C 0.056 3.944
27 C -0.167 4.167
28 H 0.106 0.894
29 H 0.065 0.935
30 H 0.082 0.918
31 H 0.116 0.884
32 H 0.093 0.907
33 H 0.136 0.864
34 H 0.122 0.878
35 H 0.256 0.744
36 H 0.176 0.824
37 H 0.066 0.934
38 H 0.088 0.912
39 H 0.081 0.919
40 H 0.242 0.758
41 H 0.076 0.924
42 H 0.079 0.921
43 H 0.073 0.927
44 H 0.025 0.975
45 H 0.073 0.927
46 H 0.061 0.939
47 H 0.013 0.987
48 H 0.080 0.920
49 H 0.095 0.905
50 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 2.485 -8.251 -25.233 26.663
hybrid contribution 0.302 -0.193 1.274 1.323
sum 2.787 -8.444 -23.959 25.556
Atomic orbital electron populations
1.22194 0.94443 1.03537 1.02380 1.21716 0.95295 0.80869 1.04116
1.47285 1.68880 1.15297 1.04366 1.19694 0.86845 0.99190 0.85016
1.22879 0.97903 0.87110 1.02423 1.83985 1.24504 1.38282 1.60826
1.24718 0.80535 1.00862 1.03500 1.22046 1.00447 0.97222 1.05736
1.20624 0.93275 0.99873 1.03961 1.20040 1.02118 0.92020 0.98508
1.16098 0.78225 0.84342 0.81038 1.90884 1.54165 1.18223 1.86396
1.45314 1.70534 1.17910 1.04505 1.20466 0.94912 0.95427 0.81415
1.22154 0.96685 1.00529 0.96769 1.20941 0.92708 0.94623 0.89666
1.44286 1.02477 1.75213 1.11234 1.19460 1.03594 1.31591 0.85147
0.91768 1.25926 0.98690 0.98711 1.00861 1.70148 1.16856 1.38803
1.32258 0.85303 0.77048 0.78603 0.79214 1.20329 1.21931 1.20030
1.20515 0.85595 0.95303 0.92937 1.22257 0.98555 1.00434 0.95453
0.89391 0.93453 0.91778 0.88418 0.90709 0.86377 0.87832 0.74382
0.82374 0.93375 0.91202 0.91917 0.75811 0.92362 0.92104 0.92683
0.97492 0.92683 0.93949 0.98695 0.92037 0.90550 0.91442
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.03 10.13 71.98 0.73 -1.30 16
2 C 0.10 1.49 5.81 86.38 0.50 1.99 16
3 N -0.62 -13.32 2.47 -844.19 -2.08 -15.40 16
4 C 0.22 4.27 5.82 85.63 0.50 4.77 16
5 C -0.05 -1.16 6.90 24.83 0.17 -0.99 16
6 O -0.18 -3.56 10.65 -2.52 -0.03 -3.59 16
7 C -0.03 -0.46 12.09 66.97 0.81 0.35 16
8 C -0.24 -4.72 10.87 22.19 0.24 -4.48 16
9 C -0.18 -4.28 6.16 -19.94 -0.12 -4.40 16
10 C -0.07 -1.80 9.35 71.24 0.67 -1.13 16
11 C 0.70 20.50 8.21 179.05 1.47 21.97 16
12 O -0.62 -22.51 14.12 -3.99 -0.06 -22.57 16
13 N -0.73 -20.23 4.94 -457.68 -2.26 -22.49 16
14 C 0.18 6.41 2.42 45.02 0.11 6.52 16
15 C -0.12 -4.52 5.65 30.67 0.17 -4.35 16
16 C 0.15 6.56 6.52 86.36 0.56 7.12 16
17 N -0.61 -31.21 2.98 -699.06 -2.08 -33.30 16
18 C -0.27 -14.87 9.57 84.03 0.80 -14.06 16
19 H 0.06 3.48 7.86 -2.91 -0.02 3.45 16
20 C -0.05 -2.58 5.00 84.86 0.42 -2.15 16
21 N -0.94 -55.33 11.18 21.65 0.24 -55.09 16
22 Si 0.97 44.65 29.57 68.60 2.03 46.68 16
23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
26 C 0.18 8.81 5.25 86.36 0.45 9.26 16
27 C -0.13 -4.60 5.55 30.67 0.17 -4.43 16
28 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16
29 H 0.05 0.73 7.94 -2.39 -0.02 0.71 16
30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16
31 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16
32 H 0.07 1.08 6.67 -2.39 -0.02 1.06 16
33 H 0.12 1.58 8.11 -2.38 -0.02 1.56 16
34 H 0.10 2.35 6.22 -2.38 -0.01 2.34 16
35 H 0.24 1.62 8.06 -2.91 -0.02 1.60 16
36 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16
37 H 0.05 1.50 7.53 -2.39 -0.02 1.48 16
38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
39 H 0.06 1.62 7.24 -2.39 -0.02 1.60 16
40 H 0.40 9.04 6.19 -92.71 -0.57 8.47 16
41 H 0.06 2.36 7.57 -2.38 -0.02 2.34 16
42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
45 H 0.05 2.40 7.93 -2.39 -0.02 2.39 16
46 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16
47 H -0.01 -0.27 8.14 -2.39 -0.02 -0.28 16
48 H 0.06 3.30 6.19 -2.38 -0.01 3.28 16
49 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
50 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
Total: -1.00 -71.25 397.71 3.78 -67.47
By element:
Atomic # 1 Polarization: 23.24 SS G_CDS: 0.36 Total: 23.60 kcal
Atomic # 6 Polarization: 7.01 SS G_CDS: 7.66 Total: 14.67 kcal
Atomic # 7 Polarization: -120.09 SS G_CDS: -6.19 Total: -126.27 kcal
Atomic # 8 Polarization: -26.07 SS G_CDS: -0.08 Total: -26.15 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal
Total: -71.25 3.78 -67.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591155662.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.578 kcal
(2) G-P(sol) polarization free energy of solvation -71.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds