Wall clock time and date at job start Tue Mar 31 2020 19:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46818 * 2 1 4 4 C 1.46902 * 110.99750 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.38302 * 119.96135 * 270.27418 * 5 4 3 7 7 C 1.38261 * 120.13876 * 180.27749 * 6 5 4 8 8 C 1.38129 * 120.06910 * 359.44735 * 7 6 5 9 9 C 1.38847 * 119.92872 * 0.27500 * 8 7 6 10 10 N 1.39946 * 120.07089 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00243 * 144.91005 * 10 9 8 12 12 O 1.21583 * 119.99749 * 4.59895 * 11 10 9 13 13 N 1.34771 * 120.00056 * 184.59379 * 11 10 9 14 14 C 1.46508 * 119.99997 * 0.02562 * 13 11 10 15 15 C 1.50702 * 109.46983 * 89.99975 * 14 13 11 16 16 H 1.08001 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99932 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99775 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47025 * 59.99418 * 19 17 15 21 21 H 1.48498 * 109.47097 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46876 * 299.99765 * 19 17 15 23 23 C 1.46494 * 120.00040 * 180.02562 * 13 11 10 24 24 C 1.52994 * 109.47605 * 90.00245 * 23 13 11 25 25 O 1.42894 * 109.47369 * 64.99873 * 24 23 13 26 26 C 1.42904 * 114.00321 * 180.02562 * 25 24 23 27 27 C 1.38085 * 119.96732 * 90.00090 * 5 4 3 28 28 H 1.08994 * 109.47602 * 299.99963 * 1 2 3 29 29 H 1.09004 * 109.47004 * 60.00413 * 1 2 3 30 30 H 1.09004 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46827 * 240.00323 * 2 1 3 32 32 H 1.08998 * 109.46860 * 120.00283 * 2 1 3 33 33 H 1.00904 * 110.99742 * 303.95383 * 3 2 1 34 34 H 1.09000 * 109.47032 * 60.00012 * 4 3 2 35 35 H 1.09004 * 109.46811 * 300.00273 * 4 3 2 36 36 H 1.08008 * 119.93400 * 0.02562 * 6 5 4 37 37 H 1.08002 * 119.96320 * 179.72299 * 7 6 5 38 38 H 1.07999 * 120.03766 * 180.25544 * 8 7 6 39 39 H 0.96999 * 119.99781 * 324.91031 * 10 9 8 40 40 H 1.09001 * 109.47118 * 209.99609 * 14 13 11 41 41 H 1.08990 * 109.46990 * 329.99921 * 14 13 11 42 42 H 0.96994 * 119.99431 * 179.97438 * 18 17 15 43 43 H 1.09008 * 109.47192 * 210.00338 * 23 13 11 44 44 H 1.09000 * 109.47160 * 329.99556 * 23 13 11 45 45 H 1.09000 * 109.47737 * 185.00290 * 24 23 13 46 46 H 1.09006 * 109.46755 * 304.99953 * 24 23 13 47 47 H 1.09003 * 109.46951 * 59.99756 * 26 25 24 48 48 H 1.08995 * 109.47461 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.46933 * 300.00058 * 26 25 24 50 50 H 1.07999 * 120.03563 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 -0.0006 5 6 3.9524 2.8580 0.0000 6 6 4.1591 3.5176 -1.1978 7 6 4.5905 4.8312 -1.2016 8 6 4.8054 5.4924 -0.0080 9 6 4.5931 4.8348 1.1963 10 7 4.8104 5.5018 2.4072 11 6 4.0222 5.2436 3.4697 12 8 3.1770 4.3723 3.4021 13 7 4.1711 5.9513 4.6069 14 6 5.1893 7.0016 4.6882 15 6 4.5937 8.3138 4.2473 16 1 3.5601 8.3609 3.9379 17 6 5.3685 9.4543 4.2388 18 7 6.6271 9.3971 4.6160 19 14 4.6301 11.0810 3.6929 20 1 3.4894 11.4286 4.5779 21 1 5.6622 12.1455 3.7752 22 1 4.1515 10.9620 2.2922 23 6 3.3148 5.6704 5.7619 24 6 3.9757 4.6060 6.6400 25 8 5.1892 5.1258 7.1867 26 6 5.8893 4.2059 8.0268 27 6 4.1654 3.5135 1.1966 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6441 1.9013 -0.7814 34 1 3.8647 0.9204 -0.8908 35 1 3.8654 0.9201 0.8892 36 1 3.9872 3.0042 -2.1324 37 1 4.7554 5.3421 -2.1387 38 1 5.1384 6.5198 -0.0115 39 1 5.5282 6.1498 2.4820 40 1 5.5398 7.0890 5.7166 41 1 6.0270 6.7464 4.0393 42 1 7.1722 10.1993 4.6097 43 1 3.1746 6.5832 6.3409 44 1 2.3469 5.3069 5.4167 45 1 3.2999 4.3325 7.4503 46 1 4.1967 3.7244 6.0381 47 1 6.1500 3.3163 7.4534 48 1 6.7982 4.6759 8.4022 49 1 5.2534 3.9238 8.8659 50 1 3.9999 2.9991 2.1317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591310437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:03 Heat of formation + Delta-G solvation = -62.342202 kcal Electronic energy + Delta-G solvation = -29416.716396 eV Core-core repulsion = 25443.392396 eV Total energy + Delta-G solvation = -3973.324000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68042 -40.02011 -38.76500 -37.47021 -36.65819 -35.64535 -34.57846 -33.04137 -31.55892 -30.47925 -29.87340 -28.75760 -27.09952 -25.93335 -24.95861 -24.47785 -23.17490 -22.94459 -21.98161 -20.74795 -19.07933 -18.61860 -18.07372 -17.43197 -17.13786 -17.03404 -16.85061 -16.52491 -16.25420 -16.04978 -15.93259 -15.72658 -15.30529 -14.98494 -14.87129 -14.50806 -14.30805 -13.90294 -13.73972 -13.63899 -13.39880 -13.26344 -13.08086 -12.84451 -12.77201 -12.75945 -12.68998 -12.56337 -12.37161 -12.15690 -12.00750 -11.91898 -11.88314 -11.71747 -11.24933 -10.91655 -10.62984 -10.53358 -9.69688 -9.54465 -9.30027 -8.89245 -8.18494 -6.34486 0.39668 0.54902 1.42247 1.42733 1.50870 1.81263 2.18751 2.40724 2.88129 2.94362 3.04417 3.11301 3.46120 3.85501 4.04958 4.15621 4.21096 4.23270 4.26289 4.33106 4.38084 4.43899 4.50633 4.52365 4.54489 4.58452 4.59631 4.66842 4.74669 4.82878 4.86179 4.90957 4.95411 4.96792 5.11836 5.13323 5.28148 5.33302 5.43224 5.50918 5.63216 5.66084 5.75468 5.84149 6.06309 6.08331 6.13629 6.22904 6.33438 6.48661 6.68867 6.99931 7.37043 7.62654 8.85907 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.003468 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.365852 B = 8072.517741 C = 9970.166210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.702 5.702 4 C 0.110 3.890 5 C -0.074 4.074 6 C -0.131 4.131 7 C -0.094 4.094 8 C -0.160 4.160 9 C 0.147 3.853 10 N -0.683 5.683 11 C 0.701 3.299 12 O -0.619 6.619 13 N -0.606 5.606 14 C 0.264 3.736 15 C -0.549 4.549 16 H 0.049 0.951 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.272 1.272 23 C 0.134 3.866 24 C 0.056 3.944 25 O -0.409 6.409 26 C 0.028 3.972 27 C -0.119 4.119 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.345 0.655 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.413 0.587 40 H 0.032 0.968 41 H 0.014 0.986 42 H 0.268 0.732 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.039 0.961 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 -15.543 -8.122 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.334 5.334 4 C -0.019 4.019 5 C -0.075 4.075 6 C -0.151 4.151 7 C -0.113 4.113 8 C -0.181 4.181 9 C 0.052 3.948 10 N -0.331 5.331 11 C 0.403 3.597 12 O -0.501 6.501 13 N -0.339 5.339 14 C 0.143 3.857 15 C -0.588 4.588 16 H 0.067 0.933 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.198 1.198 23 C 0.011 3.989 24 C -0.022 4.022 25 O -0.329 6.329 26 C -0.068 4.068 27 C -0.140 4.140 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.164 0.836 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.251 0.749 40 H 0.050 0.950 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.028 -15.758 -7.371 18.109 hybrid contribution 0.456 1.073 -0.437 1.245 sum -4.573 -14.685 -7.807 17.249 Atomic orbital electron populations 1.21746 0.94324 1.02433 1.01992 1.21961 0.96261 0.88457 1.00730 1.60442 1.07273 1.14724 1.51005 1.20757 0.88013 0.91602 1.01517 1.19798 0.98877 0.96434 0.92353 1.21243 1.01123 0.95038 0.97648 1.21192 0.97881 0.94789 0.97397 1.21153 1.05213 1.00315 0.91415 1.17958 1.00314 0.91644 0.84868 1.42847 1.35366 1.45324 1.09566 1.15985 0.81173 0.81684 0.80818 1.90804 1.39283 1.36416 1.83626 1.47327 1.38500 1.36848 1.11272 1.18921 0.85405 0.83883 0.97482 1.21667 0.97511 0.94150 1.45447 0.93288 1.25634 0.95062 1.02082 0.94908 1.70021 1.07510 1.30436 1.47607 0.85628 0.78140 0.79087 0.78911 1.19908 1.20519 1.19761 1.21390 0.93142 0.99017 0.85386 1.22953 0.86741 0.95957 0.96511 1.88000 1.37334 1.41196 1.66339 1.22866 0.97223 0.93196 0.93526 1.21040 1.01397 0.92666 0.98946 0.93414 0.92281 0.90638 0.93903 0.91723 0.83602 0.92063 0.91441 0.83188 0.82717 0.85598 0.74855 0.95027 0.96837 0.92302 0.89928 0.88934 0.89834 0.94405 0.94192 0.89265 0.92293 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.17 71.98 0.73 -1.60 16 2 C 0.05 0.96 6.41 86.30 0.55 1.52 16 3 N -0.70 -15.86 6.49 -517.90 -3.36 -19.22 16 4 C 0.11 2.47 5.81 85.56 0.50 2.97 16 5 C -0.07 -2.02 5.39 -19.89 -0.11 -2.13 16 6 C -0.13 -2.97 9.70 22.29 0.22 -2.76 16 7 C -0.09 -2.27 10.04 22.25 0.22 -2.05 16 8 C -0.16 -5.01 9.97 22.39 0.22 -4.78 16 9 C 0.15 5.51 6.30 38.15 0.24 5.75 16 10 N -0.68 -28.68 5.22 -317.18 -1.65 -30.34 16 11 C 0.70 31.87 8.12 179.05 1.45 33.32 16 12 O -0.62 -29.49 13.36 -3.98 -0.05 -29.54 16 13 N -0.61 -27.24 2.42 -844.21 -2.04 -29.29 16 14 C 0.26 13.26 4.79 85.63 0.41 13.67 16 15 C -0.55 -29.46 9.39 25.60 0.24 -29.22 16 16 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 17 C 0.02 1.27 5.46 84.65 0.46 1.74 16 18 N -0.92 -51.25 13.29 21.45 0.28 -50.97 16 19 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.13 5.18 5.81 86.38 0.50 5.69 16 24 C 0.06 1.87 6.28 71.98 0.45 2.32 16 25 O -0.41 -14.92 9.53 -148.98 -1.42 -16.34 16 26 C 0.03 0.74 11.01 113.37 1.25 1.99 16 27 C -0.12 -4.27 8.35 22.39 0.19 -4.08 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.35 7.06 8.72 -89.69 -0.78 6.28 16 34 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 35 H 0.07 1.65 8.08 -2.38 -0.02 1.64 16 36 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 39 H 0.41 17.59 6.52 -92.71 -0.60 16.99 16 40 H 0.03 1.72 7.12 -2.39 -0.02 1.71 16 41 H 0.01 0.71 6.30 -2.39 -0.02 0.70 16 42 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.08 3.22 8.07 -2.38 -0.02 3.20 16 44 H 0.09 3.45 7.42 -2.39 -0.02 3.43 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.11 4.60 6.23 -2.91 -0.02 4.59 16 Total: -1.00 -66.77 412.40 0.86 -65.91 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -0.45 Total: 42.82 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 7.53 Total: 22.33 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -6.77 Total: -129.81 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.47 Total: -45.88 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.77 0.86 -65.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591310437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.563 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds