Wall clock time and date at job start Tue Mar 31 2020 18:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47261 * 2 1 4 4 C 1.50703 * 109.46946 * 119.99589 * 2 1 3 5 5 O 1.21284 * 120.00087 * 119.99864 * 4 2 1 6 6 N 1.34777 * 119.99991 * 300.00272 * 4 2 1 7 7 C 1.46507 * 119.99713 * 179.97438 * 6 4 2 8 8 C 1.47194 * 109.47309 * 299.99811 * 7 6 4 9 9 N 4.99256 * 87.65479 * 132.95558 * 2 1 3 10 10 C 1.53002 * 109.46688 * 179.97438 * 7 6 4 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 7 6 12 12 C 1.53006 * 109.47127 * 60.00361 * 11 10 7 13 13 C 1.52999 * 109.46626 * 299.99539 * 12 11 10 14 14 C 1.52996 * 109.47258 * 60.00169 * 7 6 4 15 15 N 1.46896 * 109.47496 * 239.99557 * 2 1 3 16 16 C 1.47840 * 111.00422 * 180.84531 * 15 2 1 17 17 C 1.54905 * 104.79778 * 213.63701 * 16 15 2 18 18 C 1.55144 * 101.65276 * 37.07104 * 17 16 15 19 19 O 1.42889 * 110.71052 * 82.72834 * 18 17 16 20 20 C 1.50702 * 110.70478 * 205.96832 * 18 17 16 21 21 H 1.08000 * 120.00542 * 113.59447 * 20 18 17 22 22 C 1.37880 * 119.99706 * 293.59205 * 20 18 17 23 23 N 1.31516 * 119.99979 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 120.00052 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.46986 * 89.99821 * 24 22 20 26 26 H 1.48504 * 109.47120 * 210.00239 * 24 22 20 27 27 H 1.48500 * 109.46764 * 330.00045 * 24 22 20 28 28 C 1.47447 * 111.00087 * 59.99936 * 15 2 1 29 29 H 1.09004 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47367 * 299.99982 * 1 2 3 31 31 H 1.09000 * 109.46870 * 60.00389 * 1 2 3 32 32 H 0.96997 * 120.00408 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47070 * 60.00104 * 10 7 6 34 34 H 1.08996 * 109.47407 * 299.99704 * 10 7 6 35 35 H 1.09001 * 109.47502 * 300.00518 * 11 10 7 36 36 H 1.09001 * 109.47289 * 180.02562 * 11 10 7 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 1.09000 * 109.47050 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 40 40 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 41 41 H 1.09001 * 109.46993 * 300.00050 * 14 7 6 42 42 H 1.09000 * 109.47380 * 59.99156 * 14 7 6 43 43 H 1.09005 * 110.36926 * 332.46337 * 16 15 2 44 44 H 1.08997 * 110.37956 * 94.80373 * 16 15 2 45 45 H 1.08994 * 110.99202 * 278.97691 * 17 16 15 46 46 H 1.09006 * 111.02738 * 155.16991 * 17 16 15 47 47 H 0.96698 * 114.00477 * 66.40154 * 19 18 17 48 48 H 0.96999 * 119.99791 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.88797 * 242.66736 * 28 15 2 50 50 H 1.09004 * 109.88450 * 3.85039 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1945 -0.9408 3.6509 8 6 1.7033 -2.3283 3.6507 9 7 1.3257 -3.3992 3.6509 10 6 1.6850 -0.2190 4.9000 11 6 2.1940 -0.9409 6.1493 12 6 3.7240 -0.9425 6.1496 13 6 4.2334 -1.6643 4.9005 14 6 3.7244 -0.9413 3.6512 15 7 2.0197 -0.6926 -1.1993 16 6 3.4974 -0.7299 -1.2233 17 6 3.8712 -0.6372 -2.7238 18 6 2.7948 0.3460 -3.2546 19 8 3.1815 1.6994 -3.0089 20 6 2.5448 0.1200 -4.7235 21 1 1.5881 -0.2538 -5.0572 22 6 3.5375 0.3904 -5.6413 23 7 4.7028 0.8451 -5.2349 24 14 3.2275 0.1109 -7.4621 25 1 2.6753 1.3500 -8.0660 26 1 4.5046 -0.2405 -8.1335 27 1 2.2561 -0.9991 -7.6341 28 6 1.5470 -0.0241 -2.4256 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1486 0.5386 2.5436 33 1 0.5950 -0.2182 4.9000 34 1 2.0491 0.8084 4.9000 35 1 1.8296 -1.9682 6.1492 36 1 1.8307 -0.4270 7.0393 37 1 4.0884 0.0847 6.1498 38 1 4.0866 -1.4564 7.0399 39 1 5.3234 -1.6658 4.9009 40 1 3.8690 -2.6915 4.9003 41 1 4.0878 -1.4552 2.7612 42 1 4.0882 0.0862 3.6512 43 1 3.9074 0.1195 -0.6769 44 1 3.8604 -1.6660 -0.7991 45 1 3.7849 -1.6095 -3.2085 46 1 4.8726 -0.2264 -2.8527 47 1 3.9612 1.9822 -3.5060 48 1 5.4010 1.0356 -5.8807 49 1 0.9106 -0.7013 -2.9953 50 1 0.9932 0.8782 -2.1660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:13 Heat of formation + Delta-G solvation = -58.239799 kcal Electronic energy + Delta-G solvation = -30531.452456 eV Core-core repulsion = 26558.306349 eV Total energy + Delta-G solvation = -3973.146107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86977 -39.12792 -37.69733 -35.86799 -34.89005 -34.49107 -32.10262 -32.04751 -31.27159 -29.77215 -28.24060 -27.58621 -25.17405 -24.04303 -23.33451 -22.87883 -21.29428 -20.53130 -19.84379 -19.14594 -17.63941 -17.30446 -16.97698 -16.48189 -15.54354 -15.12836 -15.00839 -14.93198 -14.84006 -14.20567 -13.98815 -13.78530 -13.58019 -13.33690 -13.27888 -13.05892 -12.94811 -12.62679 -12.51199 -12.27916 -12.24553 -12.03143 -11.87579 -11.68794 -11.52890 -11.44326 -11.28165 -11.18283 -11.03402 -10.91667 -10.83138 -10.65362 -10.54912 -10.43086 -10.26852 -9.89031 -9.42451 -9.35245 -9.25423 -8.60389 -8.06551 -7.61778 -6.20062 -4.26695 2.33623 2.67954 2.70690 3.23780 3.24227 3.31106 3.35019 3.68766 4.21064 4.30897 4.31820 4.49453 4.59266 4.68324 4.72675 4.90636 5.02691 5.04903 5.06376 5.19193 5.21512 5.35563 5.39775 5.44510 5.61486 5.63012 5.69106 5.71267 5.74545 5.84607 5.90695 6.00611 6.03305 6.15441 6.17139 6.20740 6.26755 6.33390 6.45411 6.70708 6.96121 7.16102 7.28208 7.45134 7.49205 7.52473 7.68238 7.74224 7.84667 8.14316 8.26324 8.74417 9.40723 9.51889 10.87258 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.002658 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.793336 B =10530.588090 C =10800.655417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.070 0.930 4 C 0.522 3.478 5 O -0.503 6.503 6 N -0.730 5.730 7 C 0.282 3.718 8 C 0.211 3.789 9 N -0.418 5.418 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.129 4.129 15 N -0.510 5.510 16 C 0.050 3.950 17 C -0.133 4.133 18 C 0.236 3.764 19 O -0.593 6.593 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.900 3.100 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.058 3.942 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.384 0.616 48 H 0.267 0.733 49 H 0.081 0.919 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.769 2.924 22.095 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 H 0.087 0.913 4 C 0.309 3.691 5 O -0.374 6.374 6 N -0.386 5.386 7 C 0.192 3.808 8 C -0.109 4.109 9 N -0.094 5.094 10 C -0.157 4.157 11 C -0.158 4.158 12 C -0.160 4.160 13 C -0.160 4.160 14 C -0.168 4.168 15 N -0.235 5.235 16 C -0.077 4.077 17 C -0.172 4.172 18 C 0.195 3.805 19 O -0.404 6.404 20 C -0.569 4.569 21 H 0.080 0.920 22 C -0.132 4.132 23 N -0.540 5.540 24 Si 0.728 3.272 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.069 4.069 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.236 0.764 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.373 0.096 22.318 22.743 hybrid contribution 0.578 1.438 -1.476 2.140 sum -3.795 1.534 20.843 21.241 Atomic orbital electron populations 1.21854 0.92572 1.03139 1.02422 1.21728 0.96806 0.96415 0.90064 0.91278 1.20906 0.79601 0.84582 0.84058 1.90690 1.35703 1.25050 1.86002 1.46191 1.55684 1.32462 1.04302 1.17629 0.95023 0.81368 0.86736 1.29128 0.93499 0.94981 0.93329 1.81119 1.08561 1.12064 1.07633 1.21838 1.01685 1.00223 0.91958 1.21552 0.96337 1.00962 0.96970 1.21599 0.95024 1.01282 0.98054 1.21578 1.01231 0.99453 0.93702 1.22040 0.91147 1.03032 1.00617 1.63633 1.10489 1.49434 0.99924 1.23066 0.86193 0.99817 0.98607 1.23195 1.01128 1.00929 0.91898 1.19713 0.88552 0.79749 0.92442 1.86039 1.52659 1.30281 1.71403 1.21600 0.99830 1.44078 0.91359 0.91958 1.25008 0.94678 0.94071 0.99488 1.69590 1.04116 1.45414 1.34835 0.86458 0.77715 0.78614 0.84410 1.20553 1.21129 1.19762 1.22912 0.98285 0.96292 0.89382 0.91527 0.92388 0.90724 0.75692 0.90295 0.88886 0.91820 0.90615 0.91232 0.91555 0.90787 0.92007 0.88597 0.89678 0.95257 0.90572 0.91848 0.90987 0.76430 0.92316 0.90072 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.96 37.16 0.33 -1.45 16 2 C 0.06 0.96 2.07 -68.87 -0.14 0.82 16 3 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 4 C 0.52 7.60 6.29 -10.98 -0.07 7.53 16 5 O -0.50 -9.16 11.48 5.55 0.06 -9.10 16 6 N -0.73 -7.25 4.98 -50.22 -0.25 -7.50 16 7 C 0.28 2.69 0.77 -134.61 -0.10 2.58 16 8 C 0.21 2.78 10.26 -20.78 -0.21 2.57 16 9 N -0.42 -6.67 18.53 42.14 0.78 -5.89 16 10 C -0.12 -0.68 4.82 -26.73 -0.13 -0.81 16 11 C -0.12 -0.70 5.70 -26.73 -0.15 -0.85 16 12 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 13 C -0.12 -1.00 5.70 -26.71 -0.15 -1.15 16 14 C -0.13 -1.25 4.64 -26.71 -0.12 -1.37 16 15 N -0.51 -10.00 4.83 -224.68 -1.09 -11.09 16 16 C 0.05 1.05 5.31 -2.30 -0.01 1.04 16 17 C -0.13 -3.16 5.66 -24.59 -0.14 -3.30 16 18 C 0.24 5.81 0.86 -89.95 -0.08 5.73 16 19 O -0.59 -15.11 13.09 -35.23 -0.46 -15.57 16 20 C -0.53 -14.16 8.21 -34.44 -0.28 -14.45 16 21 H 0.06 1.65 7.53 -52.49 -0.40 1.26 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.90 -24.01 10.69 55.43 0.59 -23.42 16 24 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.06 1.24 5.49 -2.83 -0.02 1.23 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 31 H 0.07 0.97 6.50 -51.93 -0.34 0.63 16 32 H 0.41 2.67 7.89 -40.82 -0.32 2.35 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.48 7.23 -51.93 -0.38 0.11 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.62 7.22 -51.93 -0.38 0.24 16 41 H 0.10 1.26 6.17 -51.93 -0.32 0.94 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.60 7.77 -51.93 -0.40 0.20 16 44 H 0.08 1.64 6.95 -51.93 -0.36 1.28 16 45 H 0.06 1.58 8.04 -51.93 -0.42 1.16 16 46 H 0.07 1.80 7.76 -51.93 -0.40 1.40 16 47 H 0.38 10.08 6.99 45.56 0.32 10.40 16 48 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 49 H 0.08 1.75 7.63 -51.93 -0.40 1.36 16 50 H 0.05 1.01 6.28 -51.93 -0.33 0.69 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -31.77 383.48 -8.58 -40.35 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.44 Total: 11.73 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.53 Total: -1.02 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.04 Total: -47.90 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.40 Total: -24.67 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.77 -8.58 -40.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.887 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds