Wall clock time and date at job start Tue Mar 31 2020 18:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46898 * 2 1 4 4 C 1.50695 * 109.47289 * 239.99929 * 2 1 3 5 5 O 1.21276 * 120.00103 * 239.99950 * 4 2 1 6 6 N 1.34777 * 120.00046 * 60.00069 * 4 2 1 7 7 C 1.46502 * 120.00333 * 180.02562 * 6 4 2 8 8 C 1.47196 * 109.46882 * 59.99758 * 7 6 4 9 9 N 4.99249 * 87.65685 * 227.04095 * 2 1 3 10 10 C 1.52996 * 109.46716 * 299.99714 * 7 6 4 11 11 C 1.53006 * 109.47218 * 179.97438 * 10 7 6 12 12 C 1.53004 * 109.46563 * 60.00254 * 11 10 7 13 13 C 1.53006 * 109.47112 * 300.00150 * 12 11 10 14 14 C 1.52994 * 109.47127 * 179.97438 * 7 6 4 15 15 N 1.46906 * 109.47025 * 119.99893 * 2 1 3 16 16 C 1.48564 * 111.00088 * 305.24385 * 15 2 1 17 17 C 1.54374 * 104.59595 * 200.95931 * 16 15 2 18 18 C 1.54260 * 105.05790 * 23.85777 * 17 16 15 19 19 O 1.42900 * 110.32265 * 118.89446 * 18 17 16 20 20 C 1.50706 * 110.32067 * 241.10035 * 18 17 16 21 21 H 1.07991 * 120.00116 * 5.37553 * 20 18 17 22 22 C 1.37881 * 119.99683 * 185.37146 * 20 18 17 23 23 N 1.31512 * 119.99730 * 185.25872 * 22 20 18 24 24 Si 1.86799 * 120.00275 * 5.26477 * 22 20 18 25 25 H 1.48498 * 109.47434 * 94.81851 * 24 22 20 26 26 H 1.48496 * 109.47270 * 214.82668 * 24 22 20 27 27 H 1.48505 * 109.46827 * 334.82172 * 24 22 20 28 28 C 1.48567 * 110.99603 * 189.83176 * 15 2 1 29 29 H 1.08999 * 109.47243 * 175.20118 * 1 2 3 30 30 H 1.09006 * 109.47223 * 295.19423 * 1 2 3 31 31 H 1.09003 * 109.47354 * 55.19713 * 1 2 3 32 32 H 0.97004 * 119.99574 * 0.02562 * 6 4 2 33 33 H 1.08992 * 109.47564 * 300.00108 * 10 7 6 34 34 H 1.09004 * 109.47489 * 60.00261 * 10 7 6 35 35 H 1.09000 * 109.46718 * 300.00754 * 11 10 7 36 36 H 1.08991 * 109.47376 * 180.02562 * 11 10 7 37 37 H 1.08996 * 109.47154 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47287 * 60.00033 * 12 11 10 39 39 H 1.09004 * 109.46949 * 300.00090 * 13 12 11 40 40 H 1.09001 * 109.46903 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.47220 * 299.99747 * 14 7 6 42 42 H 1.09004 * 109.47258 * 59.99848 * 14 7 6 43 43 H 1.08999 * 110.40508 * 82.18314 * 16 15 2 44 44 H 1.08995 * 110.51404 * 319.79372 * 16 15 2 45 45 H 1.09001 * 110.32684 * 264.96171 * 17 16 15 46 46 H 1.08993 * 110.40960 * 142.79203 * 17 16 15 47 47 H 0.96709 * 114.00141 * 56.46476 * 19 18 17 48 48 H 0.97008 * 119.99966 * 180.02562 * 23 22 20 49 49 H 1.08993 * 110.41485 * 40.25757 * 28 15 2 50 50 H 1.08999 * 110.40725 * 277.81744 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 6 1.7035 -2.3284 -3.6505 9 7 1.3259 -3.3994 -3.6507 10 6 3.7246 -0.9413 -3.6509 11 6 4.2343 -1.6635 -4.8999 12 6 3.7244 -0.9426 -6.1494 13 6 2.1943 -0.9420 -6.1492 14 6 1.6842 -0.2199 -4.8999 15 7 2.0196 -0.6925 1.1995 16 6 1.4425 -0.0959 2.4316 17 6 2.4090 -0.5194 3.5584 18 6 3.7530 -0.7921 2.8522 19 8 4.7629 0.0879 3.3500 20 6 4.1654 -2.2283 3.0486 21 1 3.4995 -2.9182 3.5454 22 6 5.3929 -2.6614 2.5938 23 7 5.7109 -3.9351 2.6717 24 14 6.6043 -1.4390 1.8673 25 1 7.5466 -0.9889 2.9230 26 1 7.3643 -2.0884 0.7692 27 1 5.8646 -0.2678 1.3320 28 6 3.4856 -0.5106 1.3581 29 1 -0.3634 -1.0240 -0.0860 30 1 -0.3634 0.4375 0.9299 31 1 -0.3634 0.5866 -0.8438 32 1 1.1494 0.5390 -2.5435 33 1 4.0883 0.0861 -3.6510 34 1 4.0880 -1.4553 -2.7609 35 1 3.8705 -2.6910 -4.8993 36 1 5.3242 -1.6642 -4.8998 37 1 4.0870 -1.4572 -7.0392 38 1 4.0880 0.0850 -6.1499 39 1 1.8306 -1.9696 -6.1486 40 1 1.8310 -0.4288 -7.0396 41 1 0.5942 -0.2199 -4.8995 42 1 2.0476 0.8078 -4.9003 43 1 0.4452 -0.4952 2.6161 44 1 1.4069 0.9904 2.3495 45 1 2.0476 -1.4242 4.0471 46 1 2.5201 0.2846 4.2860 47 1 4.8882 0.0410 4.3078 48 1 6.5747 -4.2398 2.3521 49 1 3.7713 0.5107 1.1065 50 1 4.0265 -1.2222 0.7343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:17 Heat of formation + Delta-G solvation = -44.262380 kcal Electronic energy + Delta-G solvation = -31140.025290 eV Core-core repulsion = 27167.485289 eV Total energy + Delta-G solvation = -3972.540000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78898 -39.17200 -37.86078 -35.75231 -35.38433 -34.39866 -32.40516 -32.02898 -31.18050 -29.76474 -28.72492 -27.74386 -24.56151 -24.14590 -23.33858 -23.15421 -21.40884 -20.78535 -19.72628 -19.39980 -17.60295 -17.14415 -16.99859 -16.50413 -15.63805 -15.20897 -15.04760 -14.87383 -14.72236 -14.45133 -14.02794 -13.82108 -13.63352 -13.34897 -13.24115 -13.05672 -12.83469 -12.61794 -12.52925 -12.46174 -12.23124 -12.11789 -11.99683 -11.93402 -11.69060 -11.52746 -11.44011 -11.18161 -11.12781 -10.98330 -10.80863 -10.74929 -10.56851 -10.26373 -9.93121 -9.86190 -9.39080 -9.30356 -8.91313 -8.49862 -8.35418 -7.88761 -5.97539 -4.05516 2.41779 2.75727 2.82871 3.30774 3.53258 3.58284 3.76315 3.78565 4.28701 4.31820 4.39815 4.58514 4.64145 4.74096 4.79992 4.93275 5.02614 5.09791 5.13229 5.18454 5.24311 5.28459 5.43844 5.44972 5.48954 5.50422 5.59398 5.68880 5.68984 5.76842 5.77763 5.79613 5.92969 5.95657 6.06607 6.11706 6.15069 6.19711 6.25310 6.30030 6.49083 6.78207 6.92484 7.20846 7.28499 7.44422 7.58050 7.62775 7.79121 8.35063 8.39312 8.89974 9.06860 9.66255 11.13150 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.004210 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.625636 B = 6649.583340 C = 7772.331768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 H 0.065 0.935 4 C 0.514 3.486 5 O -0.482 6.482 6 N -0.732 5.732 7 C 0.284 3.716 8 C 0.208 3.792 9 N -0.414 5.414 10 C -0.132 4.132 11 C -0.122 4.122 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.117 4.117 15 N -0.476 5.476 16 C 0.038 3.962 17 C -0.140 4.140 18 C 0.218 3.782 19 O -0.580 6.580 20 C -0.532 4.532 21 H 0.075 0.925 22 C 0.080 3.920 23 N -0.892 5.892 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.314 1.314 27 H -0.253 1.253 28 C 0.060 3.940 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.405 0.595 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.364 0.636 48 H 0.262 0.738 49 H 0.022 0.978 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 15.299 -15.661 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 H 0.082 0.918 4 C 0.300 3.700 5 O -0.352 6.352 6 N -0.389 5.389 7 C 0.194 3.806 8 C -0.112 4.112 9 N -0.090 5.090 10 C -0.171 4.171 11 C -0.161 4.161 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.155 4.155 15 N -0.202 5.202 16 C -0.089 4.089 17 C -0.178 4.178 18 C 0.178 3.822 19 O -0.386 6.386 20 C -0.569 4.569 21 H 0.094 0.906 22 C -0.124 4.124 23 N -0.528 5.528 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.243 1.243 27 H -0.178 1.178 28 C -0.067 4.067 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.211 0.789 48 H 0.072 0.928 49 H 0.040 0.960 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.730 12.387 -16.255 22.634 hybrid contribution 0.673 1.893 0.321 2.034 sum -9.057 14.280 -15.934 23.234 Atomic orbital electron populations 1.21838 0.92378 1.03306 1.02502 1.21750 0.96862 0.96018 0.91081 0.91786 1.20759 0.80324 0.85051 0.83915 1.90812 1.34451 1.24246 1.85663 1.46161 1.55942 1.32450 1.04320 1.17609 0.95008 0.81424 0.86577 1.29096 0.93632 0.94981 0.93517 1.81131 1.08549 1.11866 1.07422 1.22051 0.91162 1.02985 1.00890 1.21575 1.01346 0.99565 0.93565 1.21598 0.94974 1.01200 0.98109 1.21561 0.96381 1.01010 0.96867 1.21828 1.01549 1.00128 0.92029 1.65299 1.06534 1.49382 0.98958 1.23047 0.98953 0.95992 0.90946 1.22991 0.97295 1.00787 0.96757 1.19835 0.83646 0.89645 0.89060 1.86342 1.60090 1.65924 1.26288 1.21267 1.03004 0.92643 1.40028 0.90647 1.25014 0.98396 0.95007 0.93960 1.69973 1.22144 1.14438 1.46288 0.86369 0.80086 0.81200 0.77879 1.21729 1.24302 1.17826 1.23452 0.86469 0.98187 0.98638 0.91237 0.91035 0.92097 0.75962 0.89762 0.88431 0.91878 0.90721 0.91551 0.91317 0.91756 0.90681 0.90355 0.89015 0.90839 0.94781 0.90624 0.92301 0.78877 0.92818 0.96006 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.90 37.16 0.33 -1.25 16 2 C 0.06 0.82 2.30 -68.87 -0.16 0.66 16 3 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 4 C 0.51 8.12 6.37 -10.99 -0.07 8.05 16 5 O -0.48 -10.28 12.04 5.56 0.07 -10.22 16 6 N -0.73 -7.85 4.99 -50.23 -0.25 -8.10 16 7 C 0.28 3.09 0.77 -134.61 -0.10 2.99 16 8 C 0.21 3.11 10.26 -20.77 -0.21 2.89 16 9 N -0.41 -7.41 18.53 42.14 0.78 -6.63 16 10 C -0.13 -1.55 4.64 -26.73 -0.12 -1.67 16 11 C -0.12 -1.26 5.70 -26.73 -0.15 -1.41 16 12 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 13 C -0.12 -0.82 5.70 -26.71 -0.15 -0.98 16 14 C -0.12 -0.76 4.83 -26.71 -0.13 -0.89 16 15 N -0.48 -9.29 4.89 -223.41 -1.09 -10.39 16 16 C 0.04 0.65 5.10 -2.18 -0.01 0.63 16 17 C -0.14 -2.73 6.40 -25.35 -0.16 -2.89 16 18 C 0.22 5.14 0.90 -90.39 -0.08 5.06 16 19 O -0.58 -13.06 9.47 -35.23 -0.33 -13.40 16 20 C -0.53 -15.31 8.78 -34.44 -0.30 -15.61 16 21 H 0.08 2.37 7.62 -52.49 -0.40 1.97 16 22 C 0.08 2.41 5.32 -17.82 -0.09 2.32 16 23 N -0.89 -28.58 13.96 55.43 0.77 -27.81 16 24 Si 0.91 24.26 24.65 -169.99 -4.19 20.07 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.31 -8.50 7.11 56.52 0.40 -8.10 16 27 H -0.25 -6.50 5.09 56.52 0.29 -6.21 16 28 C 0.06 1.36 3.30 -2.18 -0.01 1.36 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.73 6.58 -51.93 -0.34 0.39 16 31 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 32 H 0.40 2.66 7.98 -40.82 -0.33 2.34 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.58 6.17 -51.93 -0.32 1.26 16 35 H 0.06 0.77 7.23 -51.93 -0.38 0.39 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.56 7.23 -51.93 -0.38 0.19 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 44 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 45 H 0.08 1.56 7.43 -51.93 -0.39 1.17 16 46 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 47 H 0.36 7.00 9.07 45.56 0.41 7.42 16 48 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 49 H 0.02 0.48 7.67 -51.93 -0.40 0.08 16 50 H 0.10 2.59 5.06 -51.93 -0.26 2.33 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -38.36 377.62 -7.58 -45.94 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.43 Total: 6.60 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.59 Total: -1.77 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.21 Total: -52.91 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.27 Total: -23.61 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.19 Total: 20.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.36 -7.58 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.679 kcal (2) G-P(sol) polarization free energy of solvation -38.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds