Wall clock time and date at job start Tue Mar 31 2020 18:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46898 * 2 1 4 4 C 1.50695 * 109.47289 * 239.99929 * 2 1 3 5 5 O 1.21276 * 120.00103 * 239.99950 * 4 2 1 6 6 N 1.34777 * 120.00046 * 60.00069 * 4 2 1 7 7 C 1.46502 * 120.00333 * 180.02562 * 6 4 2 8 8 C 1.47196 * 109.46882 * 59.99758 * 7 6 4 9 9 N 4.99249 * 87.65685 * 227.04095 * 2 1 3 10 10 C 1.52996 * 109.46716 * 299.99714 * 7 6 4 11 11 C 1.53006 * 109.47218 * 179.97438 * 10 7 6 12 12 C 1.53004 * 109.46563 * 60.00254 * 11 10 7 13 13 C 1.53006 * 109.47112 * 300.00150 * 12 11 10 14 14 C 1.52994 * 109.47127 * 179.97438 * 7 6 4 15 15 N 1.46906 * 109.47025 * 119.99893 * 2 1 3 16 16 C 1.48564 * 111.00088 * 305.24385 * 15 2 1 17 17 C 1.54374 * 104.59595 * 200.95931 * 16 15 2 18 18 C 1.54260 * 105.05790 * 23.85777 * 17 16 15 19 19 O 1.42900 * 110.32265 * 118.89446 * 18 17 16 20 20 C 1.50706 * 110.32067 * 241.10035 * 18 17 16 21 21 H 1.07991 * 120.00116 * 5.37553 * 20 18 17 22 22 C 1.37881 * 119.99683 * 185.37146 * 20 18 17 23 23 N 1.31512 * 119.99730 * 185.25872 * 22 20 18 24 24 Si 1.86799 * 120.00275 * 5.26477 * 22 20 18 25 25 H 1.48498 * 109.47434 * 94.81851 * 24 22 20 26 26 H 1.48496 * 109.47270 * 214.82668 * 24 22 20 27 27 H 1.48505 * 109.46827 * 334.82172 * 24 22 20 28 28 C 1.48567 * 110.99603 * 189.83176 * 15 2 1 29 29 H 1.08999 * 109.47243 * 175.20118 * 1 2 3 30 30 H 1.09006 * 109.47223 * 295.19423 * 1 2 3 31 31 H 1.09003 * 109.47354 * 55.19713 * 1 2 3 32 32 H 0.97004 * 119.99574 * 0.02562 * 6 4 2 33 33 H 1.08992 * 109.47564 * 300.00108 * 10 7 6 34 34 H 1.09004 * 109.47489 * 60.00261 * 10 7 6 35 35 H 1.09000 * 109.46718 * 300.00754 * 11 10 7 36 36 H 1.08991 * 109.47376 * 180.02562 * 11 10 7 37 37 H 1.08996 * 109.47154 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47287 * 60.00033 * 12 11 10 39 39 H 1.09004 * 109.46949 * 300.00090 * 13 12 11 40 40 H 1.09001 * 109.46903 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.47220 * 299.99747 * 14 7 6 42 42 H 1.09004 * 109.47258 * 59.99848 * 14 7 6 43 43 H 1.08999 * 110.40508 * 82.18314 * 16 15 2 44 44 H 1.08995 * 110.51404 * 319.79372 * 16 15 2 45 45 H 1.09001 * 110.32684 * 264.96171 * 17 16 15 46 46 H 1.08993 * 110.40960 * 142.79203 * 17 16 15 47 47 H 0.96709 * 114.00141 * 56.46476 * 19 18 17 48 48 H 0.97008 * 119.99966 * 180.02562 * 23 22 20 49 49 H 1.08993 * 110.41485 * 40.25757 * 28 15 2 50 50 H 1.08999 * 110.40725 * 277.81744 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 6 1.7035 -2.3284 -3.6505 9 7 1.3259 -3.3994 -3.6507 10 6 3.7246 -0.9413 -3.6509 11 6 4.2343 -1.6635 -4.8999 12 6 3.7244 -0.9426 -6.1494 13 6 2.1943 -0.9420 -6.1492 14 6 1.6842 -0.2199 -4.8999 15 7 2.0196 -0.6925 1.1995 16 6 1.4425 -0.0959 2.4316 17 6 2.4090 -0.5194 3.5584 18 6 3.7530 -0.7921 2.8522 19 8 4.7629 0.0879 3.3500 20 6 4.1654 -2.2283 3.0486 21 1 3.4995 -2.9182 3.5454 22 6 5.3929 -2.6614 2.5938 23 7 5.7109 -3.9351 2.6717 24 14 6.6043 -1.4390 1.8673 25 1 7.5466 -0.9889 2.9230 26 1 7.3643 -2.0884 0.7692 27 1 5.8646 -0.2678 1.3320 28 6 3.4856 -0.5106 1.3581 29 1 -0.3634 -1.0240 -0.0860 30 1 -0.3634 0.4375 0.9299 31 1 -0.3634 0.5866 -0.8438 32 1 1.1494 0.5390 -2.5435 33 1 4.0883 0.0861 -3.6510 34 1 4.0880 -1.4553 -2.7609 35 1 3.8705 -2.6910 -4.8993 36 1 5.3242 -1.6642 -4.8998 37 1 4.0870 -1.4572 -7.0392 38 1 4.0880 0.0850 -6.1499 39 1 1.8306 -1.9696 -6.1486 40 1 1.8310 -0.4288 -7.0396 41 1 0.5942 -0.2199 -4.8995 42 1 2.0476 0.8078 -4.9003 43 1 0.4452 -0.4952 2.6161 44 1 1.4069 0.9904 2.3495 45 1 2.0476 -1.4242 4.0471 46 1 2.5201 0.2846 4.2860 47 1 4.8882 0.0410 4.3078 48 1 6.5747 -4.2398 2.3521 49 1 3.7713 0.5107 1.1065 50 1 4.0265 -1.2222 0.7343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:16 Heat of formation + Delta-G solvation = -77.919953 kcal Electronic energy + Delta-G solvation = -31141.484791 eV Core-core repulsion = 27167.485289 eV Total energy + Delta-G solvation = -3973.999502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84402 -40.45984 -39.17976 -36.97118 -36.92075 -35.45318 -34.45353 -33.55139 -31.87665 -30.78492 -30.14660 -29.39636 -26.14199 -25.58200 -24.29741 -23.92183 -22.63806 -21.83144 -21.18123 -20.76655 -19.17462 -18.57031 -18.20935 -17.53069 -17.02298 -16.95636 -16.34869 -16.09136 -15.77497 -15.57613 -15.43154 -15.32451 -14.87046 -14.63278 -14.39163 -14.25802 -14.16757 -14.01697 -13.72314 -13.65237 -13.55586 -13.28395 -13.11749 -13.06454 -13.04629 -12.78945 -12.72712 -12.63957 -12.27574 -12.14697 -12.09878 -11.82436 -11.77624 -11.59580 -11.48875 -11.30839 -10.98827 -10.80351 -10.54499 -10.36414 -10.27799 -9.25761 -8.33287 -6.42810 1.33657 1.36489 1.40395 1.60202 1.61312 1.68765 2.22586 2.40218 2.81306 2.92763 3.09403 3.53688 3.60722 3.69190 3.84698 3.90690 4.04020 4.10739 4.13108 4.16862 4.19331 4.26948 4.40309 4.43205 4.45084 4.45473 4.65823 4.69528 4.80943 4.83782 4.89067 4.91603 4.99991 5.08520 5.12028 5.12837 5.15314 5.24746 5.26348 5.28407 5.32886 5.35531 5.44771 5.46985 5.65062 5.96193 6.11404 6.13136 6.44218 6.58046 6.66201 7.14471 7.28486 7.37051 8.81923 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.004210 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.625636 B = 6649.583340 C = 7772.331768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.098 0.902 4 C 0.508 3.492 5 O -0.550 6.550 6 N -0.705 5.705 7 C 0.279 3.721 8 C 0.227 3.773 9 N -0.482 5.482 10 C -0.130 4.130 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.121 4.121 14 C -0.108 4.108 15 N -0.511 5.511 16 C 0.046 3.954 17 C -0.137 4.137 18 C 0.212 3.788 19 O -0.579 6.579 20 C -0.528 4.528 21 H 0.030 0.970 22 C 0.022 3.978 23 N -0.947 5.947 24 Si 0.976 3.024 25 H -0.278 1.278 26 H -0.328 1.328 27 H -0.236 1.236 28 C 0.071 3.929 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.430 0.570 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.379 0.621 48 H 0.261 0.739 49 H 0.036 0.964 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 21.203 -17.451 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 H 0.115 0.885 4 C 0.295 3.705 5 O -0.425 6.425 6 N -0.363 5.363 7 C 0.189 3.811 8 C -0.092 4.092 9 N -0.158 5.158 10 C -0.170 4.170 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.146 4.146 15 N -0.237 5.237 16 C -0.081 4.081 17 C -0.175 4.175 18 C 0.172 3.828 19 O -0.387 6.387 20 C -0.566 4.566 21 H 0.048 0.952 22 C -0.176 4.176 23 N -0.587 5.587 24 Si 0.806 3.194 25 H -0.204 1.204 26 H -0.259 1.259 27 H -0.160 1.160 28 C -0.057 4.057 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.271 0.729 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.151 0.849 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.228 0.772 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.630 18.367 -18.045 28.253 hybrid contribution 1.199 -0.017 0.915 1.508 sum -10.431 18.350 -17.130 27.184 Atomic orbital electron populations 1.21877 0.89305 1.02708 1.05437 1.21971 0.99055 0.96592 0.88355 0.88511 1.21220 0.79344 0.84276 0.85699 1.90823 1.37559 1.27344 1.86739 1.45889 1.55058 1.32537 1.02807 1.18110 0.94540 0.79813 0.88662 1.30075 0.91933 0.95765 0.91444 1.81116 1.10992 1.13965 1.09763 1.22018 0.91854 1.04018 0.99076 1.21590 1.01371 0.98159 0.95080 1.21589 0.95390 1.02148 0.96037 1.21609 0.95898 0.99967 0.98433 1.21964 1.02784 1.01186 0.88692 1.65120 1.04498 1.52252 1.01812 1.23086 0.98567 0.98089 0.88338 1.22900 0.95426 1.01043 0.98175 1.19755 0.85733 0.86501 0.90844 1.86266 1.59927 1.64694 1.27805 1.21647 1.01693 0.95313 1.37940 0.95195 1.25869 1.00629 0.96405 0.94729 1.70127 1.22849 1.16726 1.48995 0.85352 0.77796 0.79356 0.76900 1.20419 1.25915 1.15997 1.23011 0.88826 0.97353 0.96475 0.93902 0.89415 0.87567 0.72907 0.86732 0.93740 0.95248 0.90802 0.91075 0.88588 0.94581 0.87462 0.88424 0.84927 0.89029 0.91048 0.93012 0.89048 0.77215 0.93045 0.94592 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.90 71.98 0.64 -1.78 16 2 C 0.05 1.37 2.30 44.17 0.10 1.47 16 3 H 0.10 1.96 7.88 -2.39 -0.02 1.94 16 4 C 0.51 15.48 6.37 87.66 0.56 16.04 16 5 O -0.55 -24.58 12.04 -3.02 -0.04 -24.61 16 6 N -0.71 -13.07 4.99 -431.23 -2.15 -15.22 16 7 C 0.28 5.61 0.77 1.79 0.00 5.61 16 8 C 0.23 7.00 10.26 89.45 0.92 7.92 16 9 N -0.48 -18.42 18.53 20.00 0.37 -18.05 16 10 C -0.13 -3.01 4.64 30.59 0.14 -2.87 16 11 C -0.12 -2.56 5.70 30.60 0.17 -2.39 16 12 C -0.11 -1.35 5.92 30.60 0.18 -1.16 16 13 C -0.12 -1.27 5.70 30.61 0.17 -1.09 16 14 C -0.11 -0.93 4.83 30.61 0.15 -0.78 16 15 N -0.51 -19.18 4.89 -860.72 -4.21 -23.39 16 16 C 0.05 1.39 5.10 86.45 0.44 1.83 16 17 C -0.14 -5.11 6.40 31.49 0.20 -4.91 16 18 C 0.21 9.90 0.90 -10.64 -0.01 9.89 16 19 O -0.58 -24.86 9.47 -148.98 -1.41 -26.27 16 20 C -0.53 -31.77 8.78 25.60 0.22 -31.55 16 21 H 0.03 2.01 7.62 -2.92 -0.02 1.99 16 22 C 0.02 1.37 5.32 84.66 0.45 1.82 16 23 N -0.95 -64.49 13.96 21.45 0.30 -64.19 16 24 Si 0.98 51.88 24.65 68.60 1.69 53.57 16 25 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.33 -18.08 7.11 99.48 0.71 -17.37 16 27 H -0.24 -11.75 5.09 99.48 0.51 -11.24 16 28 C 0.07 3.21 3.30 86.45 0.28 3.49 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.32 6.58 -2.38 -0.02 1.30 16 31 H 0.11 0.93 7.70 -2.39 -0.02 0.91 16 32 H 0.43 3.35 7.98 -92.71 -0.74 2.61 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.54 6.17 -2.38 -0.01 1.52 16 35 H 0.03 0.78 7.23 -2.39 -0.02 0.76 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.04 0.59 7.23 -2.39 -0.02 0.57 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.09 2.45 7.56 -2.39 -0.02 2.43 16 44 H 0.07 1.66 8.00 -2.39 -0.02 1.65 16 45 H 0.05 2.14 7.43 -2.39 -0.02 2.12 16 46 H 0.09 2.78 7.98 -2.39 -0.02 2.76 16 47 H 0.38 13.75 9.07 -74.05 -0.67 13.08 16 48 H 0.26 16.85 8.31 -92.70 -0.77 16.08 16 49 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 50 H 0.05 2.75 5.06 -2.39 -0.01 2.74 16 Total: -1.00 -96.21 377.62 -1.46 -97.67 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.65 Total: 18.95 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.63 Total: 1.55 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -5.69 Total: -120.86 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.45 Total: -50.89 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.69 Total: 53.57 kcal Total: -96.21 -1.46 -97.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.747 kcal (2) G-P(sol) polarization free energy of solvation -96.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds