Wall clock time and date at job start Tue Mar 31 2020 18:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47630 * 2 1 4 4 C 1.50703 * 109.46695 * 119.99519 * 2 1 3 5 5 O 1.21284 * 120.00038 * 119.99712 * 4 2 1 6 6 N 1.34772 * 120.00490 * 300.00002 * 4 2 1 7 7 C 1.46499 * 120.00362 * 179.97438 * 6 4 2 8 8 C 1.47201 * 109.47110 * 60.00017 * 7 6 4 9 9 N 4.99261 * 130.96151 * 104.44629 * 2 1 3 10 10 C 1.52998 * 109.47109 * 299.99857 * 7 6 4 11 11 C 1.53004 * 109.46906 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46826 * 60.00500 * 11 10 7 13 13 C 1.52999 * 109.47461 * 299.99671 * 12 11 10 14 14 C 1.52996 * 109.46957 * 59.99721 * 13 12 11 15 15 N 1.46896 * 109.47095 * 239.99347 * 2 1 3 16 16 C 1.48537 * 110.99871 * 187.39671 * 15 2 1 17 17 C 1.55195 * 103.23713 * 200.25830 * 16 15 2 18 18 C 1.54595 * 102.80261 * 37.43835 * 17 16 15 19 19 O 1.42901 * 110.30687 * 219.05142 * 18 17 16 20 20 C 1.50701 * 110.30691 * 96.97714 * 18 17 16 21 21 H 1.08002 * 119.99761 * 242.78612 * 20 18 17 22 22 C 1.37871 * 119.99694 * 63.07175 * 20 18 17 23 23 N 1.31523 * 119.99908 * 179.72112 * 22 20 18 24 24 Si 1.86800 * 120.00405 * 359.71709 * 22 20 18 25 25 H 1.48500 * 109.47210 * 90.00069 * 24 22 20 26 26 H 1.48504 * 109.47424 * 210.00300 * 24 22 20 27 27 H 1.48502 * 109.46888 * 330.00390 * 24 22 20 28 28 C 1.47903 * 110.99674 * 70.00811 * 15 2 1 29 29 H 1.09006 * 109.46561 * 60.00092 * 1 2 3 30 30 H 1.08999 * 109.47630 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47039 * 300.01058 * 1 2 3 32 32 H 0.96998 * 119.99950 * 0.02562 * 6 4 2 33 33 H 1.08988 * 109.47676 * 299.99917 * 10 7 6 34 34 H 1.09005 * 109.47087 * 60.00283 * 10 7 6 35 35 H 1.08998 * 109.47694 * 300.00258 * 11 10 7 36 36 H 1.08999 * 109.46719 * 180.02562 * 11 10 7 37 37 H 1.09006 * 109.46970 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47597 * 60.00095 * 12 11 10 39 39 H 1.09005 * 109.46993 * 300.00314 * 13 12 11 40 40 H 1.08997 * 109.47338 * 180.02562 * 13 12 11 41 41 H 1.09005 * 109.47341 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.46784 * 60.00465 * 14 13 12 43 43 H 1.08997 * 110.67172 * 318.71890 * 16 15 2 44 44 H 1.09007 * 110.66338 * 81.68124 * 16 15 2 45 45 H 1.08997 * 110.76352 * 279.12639 * 17 16 15 46 46 H 1.09002 * 110.79648 * 155.76503 * 17 16 15 47 47 H 0.96695 * 113.99750 * 297.20259 * 19 18 17 48 48 H 0.96995 * 120.00181 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.91988 * 26.48766 * 28 15 2 50 50 H 1.08998 * 109.91293 * 265.19033 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7294 -1.6965 1.1194 6 7 1.7067 -0.2499 2.4546 7 6 2.1944 -0.9407 3.6509 8 6 3.6664 -0.9414 3.6512 9 7 4.8029 -0.9406 3.6510 10 6 1.6838 -2.3830 3.6507 11 6 2.1938 -3.1047 4.8997 12 6 1.6843 -2.3834 6.1491 13 6 2.1948 -0.9411 6.1494 14 6 1.6850 -0.2195 4.9003 15 7 2.0197 -0.6926 -1.1993 16 6 3.4936 -0.8689 -1.1477 17 6 3.8759 -1.1019 -2.6336 18 6 2.9214 -0.1470 -3.3867 19 8 2.4488 -0.7628 -4.5865 20 6 3.6219 1.1486 -3.7055 21 1 3.2622 2.0751 -3.2829 22 6 4.7185 1.1519 -4.5412 23 7 5.3265 2.2834 -4.8238 24 14 5.3406 -0.4506 -5.2721 25 1 4.6633 -0.6986 -6.5702 26 1 6.8070 -0.3598 -5.4884 27 1 5.0462 -1.5676 -4.3389 28 6 1.7512 0.1025 -2.4172 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.1487 0.5386 2.5436 33 1 0.5939 -2.3826 3.6505 34 1 2.0471 -2.8970 2.7608 35 1 3.2837 -3.1052 4.8996 36 1 1.8303 -4.1323 4.8994 37 1 2.0472 -2.8978 7.0390 38 1 0.5943 -2.3830 6.1494 39 1 3.2849 -0.9416 6.1492 40 1 1.8322 -0.4275 7.0397 41 1 2.0483 0.8082 4.9007 42 1 0.5949 -0.2190 4.9005 43 1 3.9754 0.0297 -0.7625 44 1 3.7563 -1.7351 -0.5403 45 1 3.6928 -2.1369 -2.9221 46 1 4.9157 -0.8285 -2.8132 47 1 3.1454 -0.9633 -5.2264 48 1 6.0982 2.2856 -5.4115 49 1 1.6974 1.1615 -2.1649 50 1 0.8157 -0.2214 -2.8733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:22 Heat of formation + Delta-G solvation = -34.786003 kcal Electronic energy + Delta-G solvation = -30694.237344 eV Core-core repulsion = 26722.108271 eV Total energy + Delta-G solvation = -3972.129074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96364 -39.27819 -37.92986 -35.88028 -35.34864 -34.59531 -32.54333 -32.20229 -31.31514 -29.89831 -28.22345 -28.00415 -25.20090 -24.09854 -23.37937 -22.94621 -21.42940 -21.04718 -19.97041 -19.47143 -17.69002 -17.35850 -16.99195 -16.46813 -15.90562 -15.56675 -15.36750 -15.00414 -14.77422 -14.51213 -13.80738 -13.75729 -13.54474 -13.49566 -13.41797 -13.29016 -13.03060 -12.67341 -12.60239 -12.54878 -12.34840 -12.21853 -12.07569 -12.05522 -11.81058 -11.60955 -11.55244 -11.37400 -11.08180 -11.03257 -10.92136 -10.74741 -10.65033 -10.42554 -10.05354 -9.78012 -9.53161 -9.28995 -9.14686 -8.75759 -8.40738 -7.86871 -6.26469 -4.30874 2.28428 2.56154 2.68158 3.13167 3.18609 3.23322 3.28441 3.64794 4.17295 4.21692 4.26483 4.37030 4.49437 4.62484 4.67934 4.82127 4.94290 4.99197 5.00890 5.11068 5.17112 5.28237 5.32241 5.39470 5.48500 5.55151 5.58384 5.64542 5.67723 5.68443 5.80229 5.84708 5.91246 5.96699 5.99182 6.10069 6.11656 6.18282 6.37059 6.54919 6.72951 6.82661 6.92880 7.04630 7.16878 7.23422 7.46435 7.53101 7.65222 8.15573 8.28881 8.73974 8.79158 9.33697 10.86056 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002994 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.303134 B = 9350.086653 C = 9699.811940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 H 0.070 0.930 4 C 0.523 3.477 5 O -0.504 6.504 6 N -0.728 5.728 7 C 0.283 3.717 8 C 0.206 3.794 9 N -0.414 5.414 10 C -0.127 4.127 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.118 4.118 15 N -0.496 5.496 16 C 0.043 3.957 17 C -0.151 4.151 18 C 0.210 3.790 19 O -0.575 6.575 20 C -0.535 4.535 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.887 5.887 24 Si 0.842 3.158 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.231 1.231 28 C 0.064 3.936 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.408 0.592 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.350 0.650 48 H 0.267 0.733 49 H 0.053 0.947 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 -5.952 22.116 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 H 0.088 0.912 4 C 0.309 3.691 5 O -0.376 6.376 6 N -0.384 5.384 7 C 0.193 3.807 8 C -0.114 4.114 9 N -0.089 5.089 10 C -0.167 4.167 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.159 4.159 14 C -0.157 4.157 15 N -0.222 5.222 16 C -0.084 4.084 17 C -0.189 4.189 18 C 0.171 3.829 19 O -0.383 6.383 20 C -0.573 4.573 21 H 0.096 0.904 22 C -0.127 4.127 23 N -0.524 5.524 24 Si 0.669 3.331 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.155 1.155 28 C -0.063 4.063 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.199 0.801 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.976 -7.012 22.193 25.733 hybrid contribution 0.920 0.670 -0.821 1.403 sum -10.056 -6.342 21.372 24.457 Atomic orbital electron populations 1.21751 0.92014 1.03295 1.02389 1.21818 0.97477 0.96603 0.89836 0.91205 1.20827 0.79415 0.84680 0.84149 1.90660 1.35791 1.25361 1.85818 1.46163 1.55023 1.32921 1.04276 1.17639 0.80936 0.95452 0.86656 1.29184 0.95030 0.93655 0.93549 1.81191 1.12774 1.07578 1.07394 1.22015 1.01703 0.92329 1.00610 1.21575 1.01134 0.99576 0.93731 1.21596 1.01121 0.95149 0.98060 1.21552 1.01272 0.96065 0.96974 1.21839 1.02409 0.99545 0.91932 1.64832 1.14353 1.43112 0.99873 1.23351 0.86325 1.01069 0.97626 1.23703 1.00731 0.99363 0.95150 1.19984 0.89928 0.90701 0.82321 1.86446 1.38580 1.83085 1.30233 1.21485 1.12554 0.93131 1.30097 0.90356 1.25026 0.95936 0.96297 0.95437 1.69887 1.20995 1.25724 1.35769 0.87787 0.78817 0.85945 0.80547 1.19938 1.21317 1.15522 1.22687 0.99246 0.95264 0.89104 0.90991 0.91212 0.92219 0.75594 0.89687 0.88569 0.91989 0.90813 0.91551 0.91254 0.91784 0.90578 0.90246 0.88872 0.94514 0.88570 0.92375 0.91058 0.80076 0.92295 0.92889 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.14 37.16 0.34 -1.10 16 2 C 0.06 0.79 2.28 -68.87 -0.16 0.63 16 3 H 0.07 1.00 7.81 -51.93 -0.41 0.59 16 4 C 0.52 7.12 6.28 -10.99 -0.07 7.05 16 5 O -0.50 -8.66 10.72 5.55 0.06 -8.60 16 6 N -0.73 -6.69 4.98 -50.23 -0.25 -6.94 16 7 C 0.28 2.54 0.77 -134.61 -0.10 2.44 16 8 C 0.21 2.72 10.26 -20.74 -0.21 2.50 16 9 N -0.41 -6.73 18.54 42.17 0.78 -5.95 16 10 C -0.13 -1.11 4.64 -26.73 -0.12 -1.23 16 11 C -0.12 -0.92 5.70 -26.73 -0.15 -1.07 16 12 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 13 C -0.12 -0.67 5.70 -26.73 -0.15 -0.82 16 14 C -0.12 -0.63 4.82 -26.73 -0.13 -0.76 16 15 N -0.50 -9.26 4.97 -223.71 -1.11 -10.38 16 16 C 0.04 0.91 5.31 -1.76 -0.01 0.90 16 17 C -0.15 -3.47 4.24 -24.73 -0.10 -3.58 16 18 C 0.21 5.10 0.96 -90.41 -0.09 5.02 16 19 O -0.57 -14.22 12.91 -35.23 -0.45 -14.68 16 20 C -0.53 -14.90 8.83 -34.44 -0.30 -15.20 16 21 H 0.08 2.34 7.59 -52.49 -0.40 1.94 16 22 C 0.08 2.18 5.37 -17.82 -0.10 2.08 16 23 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 24 Si 0.84 20.21 23.21 -169.99 -3.95 16.27 16 25 H -0.27 -6.36 7.03 56.52 0.40 -5.96 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.23 -5.22 4.45 56.52 0.25 -4.97 16 28 C 0.06 1.33 5.27 -2.75 -0.01 1.32 16 29 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 32 H 0.41 2.36 7.89 -40.82 -0.32 2.04 16 33 H 0.08 0.57 8.14 -51.94 -0.42 0.14 16 34 H 0.10 1.16 6.17 -51.93 -0.32 0.84 16 35 H 0.06 0.59 7.23 -51.93 -0.38 0.22 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.48 7.23 -51.93 -0.38 0.11 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.04 0.80 8.02 -51.93 -0.42 0.39 16 44 H 0.10 2.04 5.96 -51.93 -0.31 1.73 16 45 H 0.06 1.31 7.84 -51.93 -0.41 0.90 16 46 H 0.07 1.71 5.15 -51.93 -0.27 1.44 16 47 H 0.35 8.33 4.51 45.56 0.21 8.53 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.05 1.09 6.81 -51.93 -0.35 0.73 16 50 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -34.78 372.08 -7.69 -42.47 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.61 Total: 10.74 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.53 Total: -2.65 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.19 Total: -49.16 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.40 Total: -23.28 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -3.95 Total: 16.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.78 -7.69 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.682 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds