Wall clock time and date at job start Tue Mar 31 2020 18:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47630 * 2 1 4 4 C 1.50703 * 109.46695 * 119.99519 * 2 1 3 5 5 O 1.21284 * 120.00038 * 119.99712 * 4 2 1 6 6 N 1.34772 * 120.00490 * 300.00002 * 4 2 1 7 7 C 1.46499 * 120.00362 * 179.97438 * 6 4 2 8 8 C 1.47201 * 109.47110 * 60.00017 * 7 6 4 9 9 N 4.99261 * 130.96151 * 104.44629 * 2 1 3 10 10 C 1.52998 * 109.47109 * 299.99857 * 7 6 4 11 11 C 1.53004 * 109.46906 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46826 * 60.00500 * 11 10 7 13 13 C 1.52999 * 109.47461 * 299.99671 * 12 11 10 14 14 C 1.52996 * 109.46957 * 59.99721 * 13 12 11 15 15 N 1.46896 * 109.47095 * 239.99347 * 2 1 3 16 16 C 1.48537 * 110.99871 * 187.39671 * 15 2 1 17 17 C 1.55195 * 103.23713 * 200.25830 * 16 15 2 18 18 C 1.54595 * 102.80261 * 37.43835 * 17 16 15 19 19 O 1.42901 * 110.30687 * 219.05142 * 18 17 16 20 20 C 1.50701 * 110.30691 * 96.97714 * 18 17 16 21 21 H 1.08002 * 119.99761 * 242.78612 * 20 18 17 22 22 C 1.37871 * 119.99694 * 63.07175 * 20 18 17 23 23 N 1.31523 * 119.99908 * 179.72112 * 22 20 18 24 24 Si 1.86800 * 120.00405 * 359.71709 * 22 20 18 25 25 H 1.48500 * 109.47210 * 90.00069 * 24 22 20 26 26 H 1.48504 * 109.47424 * 210.00300 * 24 22 20 27 27 H 1.48502 * 109.46888 * 330.00390 * 24 22 20 28 28 C 1.47903 * 110.99674 * 70.00811 * 15 2 1 29 29 H 1.09006 * 109.46561 * 60.00092 * 1 2 3 30 30 H 1.08999 * 109.47630 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47039 * 300.01058 * 1 2 3 32 32 H 0.96998 * 119.99950 * 0.02562 * 6 4 2 33 33 H 1.08988 * 109.47676 * 299.99917 * 10 7 6 34 34 H 1.09005 * 109.47087 * 60.00283 * 10 7 6 35 35 H 1.08998 * 109.47694 * 300.00258 * 11 10 7 36 36 H 1.08999 * 109.46719 * 180.02562 * 11 10 7 37 37 H 1.09006 * 109.46970 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47597 * 60.00095 * 12 11 10 39 39 H 1.09005 * 109.46993 * 300.00314 * 13 12 11 40 40 H 1.08997 * 109.47338 * 180.02562 * 13 12 11 41 41 H 1.09005 * 109.47341 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.46784 * 60.00465 * 14 13 12 43 43 H 1.08997 * 110.67172 * 318.71890 * 16 15 2 44 44 H 1.09007 * 110.66338 * 81.68124 * 16 15 2 45 45 H 1.08997 * 110.76352 * 279.12639 * 17 16 15 46 46 H 1.09002 * 110.79648 * 155.76503 * 17 16 15 47 47 H 0.96695 * 113.99750 * 297.20259 * 19 18 17 48 48 H 0.96995 * 120.00181 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.91988 * 26.48766 * 28 15 2 50 50 H 1.08998 * 109.91293 * 265.19033 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7294 -1.6965 1.1194 6 7 1.7067 -0.2499 2.4546 7 6 2.1944 -0.9407 3.6509 8 6 3.6664 -0.9414 3.6512 9 7 4.8029 -0.9406 3.6510 10 6 1.6838 -2.3830 3.6507 11 6 2.1938 -3.1047 4.8997 12 6 1.6843 -2.3834 6.1491 13 6 2.1948 -0.9411 6.1494 14 6 1.6850 -0.2195 4.9003 15 7 2.0197 -0.6926 -1.1993 16 6 3.4936 -0.8689 -1.1477 17 6 3.8759 -1.1019 -2.6336 18 6 2.9214 -0.1470 -3.3867 19 8 2.4488 -0.7628 -4.5865 20 6 3.6219 1.1486 -3.7055 21 1 3.2622 2.0751 -3.2829 22 6 4.7185 1.1519 -4.5412 23 7 5.3265 2.2834 -4.8238 24 14 5.3406 -0.4506 -5.2721 25 1 4.6633 -0.6986 -6.5702 26 1 6.8070 -0.3598 -5.4884 27 1 5.0462 -1.5676 -4.3389 28 6 1.7512 0.1025 -2.4172 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.1487 0.5386 2.5436 33 1 0.5939 -2.3826 3.6505 34 1 2.0471 -2.8970 2.7608 35 1 3.2837 -3.1052 4.8996 36 1 1.8303 -4.1323 4.8994 37 1 2.0472 -2.8978 7.0390 38 1 0.5943 -2.3830 6.1494 39 1 3.2849 -0.9416 6.1492 40 1 1.8322 -0.4275 7.0397 41 1 2.0483 0.8082 4.9007 42 1 0.5949 -0.2190 4.9005 43 1 3.9754 0.0297 -0.7625 44 1 3.7563 -1.7351 -0.5403 45 1 3.6928 -2.1369 -2.9221 46 1 4.9157 -0.8285 -2.8132 47 1 3.1454 -0.9633 -5.2264 48 1 6.0982 2.2856 -5.4115 49 1 1.6974 1.1615 -2.1649 50 1 0.8157 -0.2214 -2.8733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:21 Heat of formation + Delta-G solvation = -63.852186 kcal Electronic energy + Delta-G solvation = -30695.497749 eV Core-core repulsion = 26722.108271 eV Total energy + Delta-G solvation = -3973.389478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92408 -40.54583 -39.24912 -36.98493 -36.90493 -35.50554 -34.57039 -33.69834 -31.83840 -30.84190 -29.91909 -29.47631 -26.90176 -25.10022 -24.14871 -23.82411 -22.95642 -21.97153 -21.29197 -20.83270 -19.29077 -18.54288 -18.18864 -17.80047 -17.37502 -17.08685 -16.40065 -15.99624 -15.66595 -15.56190 -15.41088 -15.23202 -14.94185 -14.57810 -14.52605 -14.48109 -14.18897 -14.04098 -13.98185 -13.63485 -13.44978 -13.27642 -13.14432 -13.10575 -13.05261 -12.75215 -12.71460 -12.56947 -12.45113 -12.28339 -12.08762 -12.00804 -11.62805 -11.55086 -11.45328 -11.26658 -11.14881 -10.83085 -10.58022 -10.44122 -10.25723 -9.41045 -8.46498 -6.56560 1.20338 1.28813 1.30918 1.34265 1.51997 1.68520 2.17040 2.19746 2.80724 2.81458 2.99590 3.51692 3.59797 3.65270 3.74247 3.84941 3.98669 4.08607 4.14874 4.20419 4.20503 4.22770 4.33291 4.44931 4.51878 4.55084 4.69352 4.75746 4.84225 4.85550 4.90865 4.95039 4.96039 5.06053 5.09228 5.13776 5.17109 5.17781 5.19949 5.31580 5.32649 5.36877 5.38061 5.40187 5.51065 5.78708 5.98732 6.11899 6.41640 6.49174 6.51403 6.84706 7.12382 7.17262 8.68991 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002994 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.303134 B = 9350.086653 C = 9699.811940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.047 3.953 3 H 0.070 0.930 4 C 0.523 3.477 5 O -0.544 6.544 6 N -0.705 5.705 7 C 0.279 3.721 8 C 0.225 3.775 9 N -0.481 5.481 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.112 4.112 15 N -0.494 5.494 16 C 0.056 3.944 17 C -0.151 4.151 18 C 0.203 3.797 19 O -0.577 6.577 20 C -0.542 4.542 21 H 0.042 0.958 22 C 0.022 3.978 23 N -0.933 5.933 24 Si 0.900 3.100 25 H -0.256 1.256 26 H -0.290 1.290 27 H -0.210 1.210 28 C 0.073 3.927 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.428 0.572 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.034 0.966 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.017 0.983 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.354 0.646 48 H 0.269 0.731 49 H 0.049 0.951 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 -6.828 24.074 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 H 0.088 0.912 4 C 0.309 3.691 5 O -0.420 6.420 6 N -0.361 5.361 7 C 0.189 3.811 8 C -0.094 4.094 9 N -0.158 5.158 10 C -0.162 4.162 11 C -0.160 4.160 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.151 4.151 15 N -0.219 5.219 16 C -0.072 4.072 17 C -0.190 4.190 18 C 0.164 3.836 19 O -0.386 6.386 20 C -0.579 4.579 21 H 0.060 0.940 22 C -0.178 4.178 23 N -0.572 5.572 24 Si 0.724 3.276 25 H -0.181 1.181 26 H -0.217 1.217 27 H -0.133 1.133 28 C -0.055 4.055 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.269 0.731 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.036 0.964 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.203 0.797 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.277 -7.858 24.188 29.166 hybrid contribution 1.898 1.013 -1.357 2.544 sum -12.379 -6.845 22.831 26.858 Atomic orbital electron populations 1.21783 0.88602 1.03877 1.04462 1.22048 1.00100 0.96022 0.88325 0.91215 1.20732 0.78997 0.84113 0.85211 1.90659 1.37655 1.27222 1.86500 1.45908 1.54121 1.33130 1.02978 1.18182 0.78324 0.96628 0.87995 1.30178 0.96099 0.91651 0.91518 1.81183 1.15087 1.09861 1.09666 1.21994 1.03387 0.91448 0.99392 1.21580 0.99204 1.00510 0.94721 1.21593 1.02592 0.94559 0.96613 1.21592 0.99597 0.96649 0.98154 1.21963 1.04697 0.99182 0.89216 1.64811 1.12458 1.43620 1.01024 1.23139 0.87988 1.00106 0.95970 1.23634 0.99571 0.99351 0.96411 1.20052 0.91455 0.89245 0.82875 1.86436 1.38825 1.82844 1.30491 1.21704 1.12896 0.93588 1.29756 0.93959 1.25882 0.96097 0.99882 0.95914 1.70028 1.21858 1.28241 1.37064 0.86819 0.77929 0.82187 0.80667 1.18100 1.21670 1.13295 1.22551 0.98181 0.95406 0.89357 0.91511 0.91306 0.87647 0.73117 0.86467 0.92272 0.95184 0.90019 0.91253 0.88567 0.94702 0.88069 0.89413 0.84789 0.96438 0.88670 0.91431 0.92514 0.79701 0.92162 0.93303 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.14 71.98 0.66 -1.64 16 2 C 0.05 1.26 2.28 44.17 0.10 1.36 16 3 H 0.07 1.91 7.81 -2.39 -0.02 1.89 16 4 C 0.52 13.49 6.28 87.66 0.55 14.04 16 5 O -0.54 -18.71 10.72 -3.04 -0.03 -18.75 16 6 N -0.70 -10.97 4.98 -431.21 -2.15 -13.11 16 7 C 0.28 4.39 0.77 1.80 0.00 4.39 16 8 C 0.22 5.98 10.26 89.44 0.92 6.90 16 9 N -0.48 -16.47 18.54 20.01 0.37 -16.09 16 10 C -0.12 -1.88 4.64 30.59 0.14 -1.74 16 11 C -0.12 -1.67 5.70 30.59 0.17 -1.50 16 12 C -0.12 -0.87 5.92 30.59 0.18 -0.69 16 13 C -0.12 -0.98 5.70 30.59 0.17 -0.81 16 14 C -0.11 -0.74 4.82 30.59 0.15 -0.59 16 15 N -0.49 -18.04 4.97 -861.69 -4.29 -22.33 16 16 C 0.06 2.34 5.31 86.74 0.46 2.81 16 17 C -0.15 -6.92 4.24 31.89 0.14 -6.79 16 18 C 0.20 9.85 0.96 -10.66 -0.01 9.84 16 19 O -0.58 -27.86 12.91 -148.98 -1.92 -29.79 16 20 C -0.54 -30.97 8.83 25.60 0.23 -30.75 16 21 H 0.04 2.65 7.59 -2.91 -0.02 2.63 16 22 C 0.02 1.26 5.37 84.65 0.45 1.71 16 23 N -0.93 -57.90 13.96 21.45 0.30 -57.60 16 24 Si 0.90 42.01 23.21 68.60 1.59 43.61 16 25 H -0.26 -11.18 7.03 99.48 0.70 -10.48 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.21 -9.04 4.45 99.48 0.44 -8.59 16 28 C 0.07 2.97 5.27 86.45 0.46 3.43 16 29 H 0.07 1.29 7.52 -2.38 -0.02 1.27 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 0.90 7.56 -2.39 -0.02 0.88 16 32 H 0.43 3.06 7.89 -92.71 -0.73 2.32 16 33 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.40 6.17 -2.38 -0.01 1.39 16 35 H 0.03 0.59 7.23 -2.39 -0.02 0.58 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.03 0.49 7.23 -2.38 -0.02 0.48 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.13 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.02 0.78 8.02 -2.39 -0.02 0.77 16 44 H 0.10 4.10 5.96 -2.38 -0.01 4.08 16 45 H 0.07 2.96 7.84 -2.39 -0.02 2.94 16 46 H 0.06 2.73 5.15 -2.39 -0.01 2.71 16 47 H 0.35 16.22 4.51 -74.06 -0.33 15.88 16 48 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 49 H 0.05 2.01 6.81 -2.39 -0.02 2.00 16 50 H 0.09 3.39 7.96 -2.39 -0.02 3.37 16 Total: -1.00 -81.63 372.08 -1.72 -83.35 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.37 Total: 30.73 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.77 Total: -0.02 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -5.76 Total: -109.14 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -1.96 Total: -48.53 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.59 Total: 43.61 kcal Total: -81.63 -1.72 -83.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.503 kcal (2) G-P(sol) polarization free energy of solvation -81.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds