Wall clock time and date at job start Tue Mar 31 2020 19:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47406 * 2 1 4 4 C 1.34949 * 126.03964 * 125.25462 * 3 2 1 5 5 C 1.35313 * 107.74853 * 180.15270 * 4 3 2 6 6 C 1.50697 * 126.04239 * 179.88263 * 5 4 3 7 7 H 1.09000 * 109.49195 * 24.67386 * 6 5 4 8 8 O 1.42898 * 109.48471 * 144.71082 * 6 5 4 9 9 C 1.42905 * 114.09851 * 181.13801 * 8 6 5 10 10 C 1.53092 * 109.42428 * 298.83405 * 9 8 6 11 11 C 1.53207 * 109.14859 * 57.60656 * 10 9 8 12 12 C 1.53097 * 109.47722 * 264.65377 * 6 5 4 13 13 H 1.09003 * 109.51867 * 302.31394 * 12 6 5 14 14 N 1.46502 * 109.52210 * 62.50239 * 12 6 5 15 15 C 1.34777 * 119.99745 * 205.00392 * 14 12 6 16 16 O 1.21277 * 120.00302 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99616 * 179.97438 * 15 14 12 18 18 C 1.53008 * 109.46862 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47110 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.46913 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99546 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00430 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47209 * 60.00106 * 24 22 20 26 26 H 1.48502 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47466 * 299.99699 * 24 22 20 28 28 C 1.39873 * 107.91711 * 359.60940 * 5 4 3 29 29 N 1.30833 * 108.20470 * 0.24906 * 28 5 4 30 30 H 1.08996 * 109.46924 * 299.99641 * 1 2 3 31 31 H 1.08999 * 109.47136 * 60.00203 * 1 2 3 32 32 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47125 * 239.99796 * 2 1 3 34 34 H 1.08997 * 109.47139 * 120.00346 * 2 1 3 35 35 H 1.08004 * 126.12363 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.48053 * 58.82596 * 9 8 6 37 37 H 1.08999 * 109.48097 * 178.85162 * 9 8 6 38 38 H 1.08999 * 109.52366 * 177.51726 * 10 9 8 39 39 H 1.08992 * 109.52532 * 297.71405 * 10 9 8 40 40 H 1.09004 * 109.54239 * 183.15817 * 11 10 9 41 41 H 1.09000 * 109.61720 * 62.93376 * 11 10 9 42 42 H 0.96999 * 119.99953 * 24.99742 * 14 12 6 43 43 H 1.08994 * 109.47212 * 299.99463 * 17 15 14 44 44 H 1.08995 * 109.47291 * 60.00114 * 17 15 14 45 45 H 1.08994 * 109.47063 * 299.99915 * 18 17 15 46 46 H 1.09005 * 109.46946 * 60.00027 * 18 17 15 47 47 H 1.09004 * 109.46955 * 299.99947 * 19 18 17 48 48 H 1.09001 * 109.47279 * 59.99689 * 19 18 17 49 49 H 0.97002 * 120.00162 * 179.97438 * 23 22 20 50 50 H 1.08006 * 125.89367 * 180.21861 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0715 3.2136 0.5463 6 6 3.9549 4.1998 1.2660 7 1 4.7311 3.6626 1.8109 8 8 4.5609 5.0786 0.3160 9 6 5.4436 6.0428 0.8933 10 6 4.6614 6.9337 1.8619 11 6 4.0056 6.0566 2.9332 12 6 3.1127 5.0164 2.2497 13 1 2.3113 5.5219 1.7108 14 7 2.5383 4.1246 3.2601 15 6 1.4064 4.4747 3.9026 16 8 0.8636 5.5281 3.6446 17 6 0.8152 3.5570 4.9416 18 6 -0.4567 4.1865 5.5135 19 6 -1.0573 3.2545 6.5679 20 6 -2.3104 3.8743 7.1307 21 1 -2.6447 4.8367 6.7726 22 6 -3.0294 3.2129 8.1037 23 7 -2.6220 2.0412 8.5402 24 14 -4.5823 3.9814 8.8019 25 1 -5.5656 4.1906 7.7090 26 1 -5.1653 3.0769 9.8252 27 1 -4.2508 5.2874 9.4262 28 6 2.3126 3.4723 -0.5999 29 7 1.6808 2.3747 -0.9281 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3264 1.4099 1.7304 36 1 6.2394 5.5296 1.4333 37 1 5.8773 6.6570 0.1041 38 1 5.3416 7.6411 2.3362 39 1 3.8914 7.4778 1.3152 40 1 3.4011 6.6784 3.5936 41 1 4.7766 5.5501 3.5139 42 1 2.9725 3.2822 3.4667 43 1 0.5722 2.5983 4.4835 44 1 1.5368 3.4039 5.7440 45 1 -0.2134 5.1450 5.9716 46 1 -1.1786 4.3399 4.7113 47 1 -1.3008 2.2961 6.1093 48 1 -0.3357 3.1006 7.3702 49 1 -3.1277 1.5761 9.2250 50 1 2.2574 4.4155 -1.1232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594345259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:06 Heat of formation + Delta-G solvation = -28.278332 kcal Electronic energy + Delta-G solvation = -29370.522569 eV Core-core repulsion = 25398.675689 eV Total energy + Delta-G solvation = -3971.846880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53585 -40.03531 -38.78461 -35.16215 -34.72259 -34.12605 -33.08417 -32.07589 -31.22507 -30.36627 -28.71007 -27.55012 -25.14778 -24.37844 -23.83212 -22.99960 -21.17219 -20.80223 -20.48708 -20.13297 -19.67967 -17.47462 -17.16585 -16.39526 -16.18913 -15.83239 -15.71679 -15.40352 -15.32400 -14.73450 -14.48553 -14.40299 -14.25728 -14.12098 -13.71670 -13.20163 -13.14364 -13.07959 -12.78870 -12.58829 -12.31755 -12.25044 -11.86029 -11.76864 -11.74199 -11.50106 -11.42704 -11.20482 -10.98521 -10.77771 -10.61296 -10.54610 -10.51974 -9.89674 -9.66737 -9.63443 -9.56235 -9.25076 -9.01502 -8.95920 -8.54501 -8.31526 -5.97581 -3.98820 1.70794 2.29861 2.60586 2.97517 3.14811 3.36822 3.39975 3.44164 3.66589 4.27094 4.49464 4.55122 4.56574 4.61941 4.65359 4.69397 4.71591 4.86264 4.88127 4.92479 5.07380 5.16664 5.26713 5.35039 5.38496 5.40208 5.44640 5.52342 5.61663 5.65838 5.70218 5.72502 5.74595 5.84573 5.91556 5.99303 6.08618 6.27183 6.47784 6.51709 6.73951 6.79429 6.94220 6.97271 7.17295 7.56305 7.63227 7.71279 7.83993 8.03193 8.47308 8.51602 9.08053 9.65068 11.13905 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.002848 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.793382 B = 9830.562055 C =11930.714684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.369 5.369 4 C 0.068 3.932 5 C -0.233 4.233 6 C 0.171 3.829 7 H 0.064 0.936 8 O -0.368 6.368 9 C 0.060 3.940 10 C -0.154 4.154 11 C -0.135 4.135 12 C 0.124 3.876 13 H 0.095 0.905 14 N -0.728 5.728 15 C 0.515 3.485 16 O -0.535 6.535 17 C -0.137 4.137 18 C -0.094 4.094 19 C 0.022 3.978 20 C -0.518 4.518 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.899 5.899 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.074 3.926 29 N -0.295 5.295 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.395 0.605 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.928 -1.533 -17.897 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.010 3.990 3 N -0.150 5.150 4 C -0.079 4.079 5 C -0.245 4.245 6 C 0.111 3.889 7 H 0.082 0.918 8 O -0.285 6.285 9 C -0.017 4.017 10 C -0.192 4.192 11 C -0.174 4.174 12 C 0.019 3.981 13 H 0.113 0.887 14 N -0.381 5.381 15 C 0.303 3.697 16 O -0.411 6.411 17 C -0.177 4.177 18 C -0.133 4.133 19 C -0.015 4.015 20 C -0.556 4.556 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.538 5.538 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.112 4.112 29 N -0.116 5.116 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.189 0.811 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.228 0.772 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.070 0.930 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 18.557 -1.639 -19.002 26.611 hybrid contribution 0.030 0.327 1.528 1.562 sum 18.587 -1.313 -17.475 25.545 Atomic orbital electron populations 1.22069 0.93447 1.03041 1.03979 1.21716 0.96427 0.77163 1.03663 1.48668 1.35070 1.10312 1.20993 1.22115 0.95578 0.93941 0.96299 1.19525 1.08428 0.94183 1.02341 1.20174 0.92235 0.88241 0.88206 0.91779 1.87978 1.61493 1.46437 1.32621 1.22635 0.91486 0.90303 0.97270 1.22200 1.00647 0.98782 0.97562 1.22053 0.99133 0.97890 0.98298 1.21467 0.96491 0.91011 0.89162 0.88699 1.45951 1.27544 1.23258 1.41341 1.21197 0.79210 0.87466 0.81790 1.90674 1.60547 1.24909 1.64936 1.21826 1.00469 0.98757 0.96662 1.21437 0.93008 0.99547 0.99258 1.19117 0.95400 0.94251 0.92773 1.21243 1.08810 1.04805 1.20789 0.92636 1.25013 0.97837 0.94946 0.96671 1.69949 1.39697 1.14181 1.29994 0.86657 0.83479 0.79121 0.78763 1.20223 1.21332 1.20203 1.23674 0.94449 0.97359 0.95752 1.77367 1.23483 0.96981 1.13745 0.91614 0.91121 0.90605 0.89858 0.88554 0.81119 0.93091 0.88574 0.90580 0.90646 0.90532 0.91677 0.77187 0.89676 0.89469 0.92715 0.92792 0.96729 0.96652 0.93033 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.10 37.16 0.38 -1.00 16 2 C 0.13 0.95 7.23 -4.04 -0.03 0.93 16 3 N -0.37 -3.83 3.68 -61.37 -0.23 -4.06 16 4 C 0.07 0.62 11.36 -17.22 -0.20 0.43 16 5 C -0.23 -2.46 4.82 -105.05 -0.51 -2.96 16 6 C 0.17 1.61 2.65 -27.83 -0.07 1.53 16 7 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 8 O -0.37 -3.62 10.12 -35.23 -0.36 -3.98 16 9 C 0.06 0.44 6.84 37.20 0.25 0.69 16 10 C -0.15 -1.23 6.14 -26.58 -0.16 -1.39 16 11 C -0.13 -1.34 5.61 -26.53 -0.15 -1.49 16 12 C 0.12 1.38 2.06 -67.79 -0.14 1.24 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 14 N -0.73 -8.35 4.73 -53.66 -0.25 -8.61 16 15 C 0.52 8.23 7.80 -10.98 -0.09 8.14 16 16 O -0.54 -10.78 15.65 5.56 0.09 -10.69 16 17 C -0.14 -2.25 5.70 -27.88 -0.16 -2.41 16 18 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 19 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 20 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 24 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.07 0.89 11.63 -17.37 -0.20 0.69 16 29 N -0.29 -3.80 12.42 30.63 0.38 -3.42 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.39 3.36 8.61 -40.82 -0.35 3.00 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 46 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 411.41 15.07 6.20 6.20 Total: -1.00 -36.09 411.41 -8.93 -45.02 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.73 Total: 0.05 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.74 Total: -11.24 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.64 Total: -42.46 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.27 Total: -14.67 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.09 -8.93 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594345259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.740 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds