Wall clock time and date at job start Tue Mar 31 2020 19:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47406 * 2 1 4 4 C 1.34949 * 126.03964 * 125.25462 * 3 2 1 5 5 C 1.35313 * 107.74853 * 180.15270 * 4 3 2 6 6 C 1.50697 * 126.04239 * 179.88263 * 5 4 3 7 7 H 1.09000 * 109.49195 * 24.67386 * 6 5 4 8 8 O 1.42898 * 109.48471 * 144.71082 * 6 5 4 9 9 C 1.42905 * 114.09851 * 181.13801 * 8 6 5 10 10 C 1.53092 * 109.42428 * 298.83405 * 9 8 6 11 11 C 1.53207 * 109.14859 * 57.60656 * 10 9 8 12 12 C 1.53097 * 109.47722 * 264.65377 * 6 5 4 13 13 H 1.09003 * 109.51867 * 302.31394 * 12 6 5 14 14 N 1.46502 * 109.52210 * 62.50239 * 12 6 5 15 15 C 1.34777 * 119.99745 * 205.00392 * 14 12 6 16 16 O 1.21277 * 120.00302 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99616 * 179.97438 * 15 14 12 18 18 C 1.53008 * 109.46862 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47110 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.46913 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99546 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00430 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47209 * 60.00106 * 24 22 20 26 26 H 1.48502 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47466 * 299.99699 * 24 22 20 28 28 C 1.39873 * 107.91711 * 359.60940 * 5 4 3 29 29 N 1.30833 * 108.20470 * 0.24906 * 28 5 4 30 30 H 1.08996 * 109.46924 * 299.99641 * 1 2 3 31 31 H 1.08999 * 109.47136 * 60.00203 * 1 2 3 32 32 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47125 * 239.99796 * 2 1 3 34 34 H 1.08997 * 109.47139 * 120.00346 * 2 1 3 35 35 H 1.08004 * 126.12363 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.48053 * 58.82596 * 9 8 6 37 37 H 1.08999 * 109.48097 * 178.85162 * 9 8 6 38 38 H 1.08999 * 109.52366 * 177.51726 * 10 9 8 39 39 H 1.08992 * 109.52532 * 297.71405 * 10 9 8 40 40 H 1.09004 * 109.54239 * 183.15817 * 11 10 9 41 41 H 1.09000 * 109.61720 * 62.93376 * 11 10 9 42 42 H 0.96999 * 119.99953 * 24.99742 * 14 12 6 43 43 H 1.08994 * 109.47212 * 299.99463 * 17 15 14 44 44 H 1.08995 * 109.47291 * 60.00114 * 17 15 14 45 45 H 1.08994 * 109.47063 * 299.99915 * 18 17 15 46 46 H 1.09005 * 109.46946 * 60.00027 * 18 17 15 47 47 H 1.09004 * 109.46955 * 299.99947 * 19 18 17 48 48 H 1.09001 * 109.47279 * 59.99689 * 19 18 17 49 49 H 0.97002 * 120.00162 * 179.97438 * 23 22 20 50 50 H 1.08006 * 125.89367 * 180.21861 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0715 3.2136 0.5463 6 6 3.9549 4.1998 1.2660 7 1 4.7311 3.6626 1.8109 8 8 4.5609 5.0786 0.3160 9 6 5.4436 6.0428 0.8933 10 6 4.6614 6.9337 1.8619 11 6 4.0056 6.0566 2.9332 12 6 3.1127 5.0164 2.2497 13 1 2.3113 5.5219 1.7108 14 7 2.5383 4.1246 3.2601 15 6 1.4064 4.4747 3.9026 16 8 0.8636 5.5281 3.6446 17 6 0.8152 3.5570 4.9416 18 6 -0.4567 4.1865 5.5135 19 6 -1.0573 3.2545 6.5679 20 6 -2.3104 3.8743 7.1307 21 1 -2.6447 4.8367 6.7726 22 6 -3.0294 3.2129 8.1037 23 7 -2.6220 2.0412 8.5402 24 14 -4.5823 3.9814 8.8019 25 1 -5.5656 4.1906 7.7090 26 1 -5.1653 3.0769 9.8252 27 1 -4.2508 5.2874 9.4262 28 6 2.3126 3.4723 -0.5999 29 7 1.6808 2.3747 -0.9281 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3264 1.4099 1.7304 36 1 6.2394 5.5296 1.4333 37 1 5.8773 6.6570 0.1041 38 1 5.3416 7.6411 2.3362 39 1 3.8914 7.4778 1.3152 40 1 3.4011 6.6784 3.5936 41 1 4.7766 5.5501 3.5139 42 1 2.9725 3.2822 3.4667 43 1 0.5722 2.5983 4.4835 44 1 1.5368 3.4039 5.7440 45 1 -0.2134 5.1450 5.9716 46 1 -1.1786 4.3399 4.7113 47 1 -1.3008 2.2961 6.1093 48 1 -0.3357 3.1006 7.3702 49 1 -3.1277 1.5761 9.2250 50 1 2.2574 4.4155 -1.1232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594345259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:05 Heat of formation + Delta-G solvation = -52.336278 kcal Electronic energy + Delta-G solvation = -29371.565800 eV Core-core repulsion = 25398.675689 eV Total energy + Delta-G solvation = -3972.890111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31386 -41.04131 -39.79544 -36.33349 -35.90422 -35.40468 -34.09561 -33.76238 -32.21726 -31.13586 -29.91424 -28.92602 -26.07275 -25.73563 -24.73354 -24.03497 -22.26680 -21.94414 -21.43800 -21.13128 -20.84510 -18.66940 -18.17666 -17.92640 -17.41056 -16.71244 -16.69964 -16.46204 -16.37816 -16.15133 -15.52814 -15.34846 -15.18453 -14.99400 -14.75801 -14.53117 -14.27924 -14.12685 -13.82581 -13.70464 -13.55505 -13.26342 -13.11053 -12.97045 -12.63329 -12.52672 -12.52427 -12.49131 -12.42435 -12.15393 -12.08815 -11.65340 -11.56548 -11.46382 -11.31674 -11.26566 -10.76110 -10.56275 -10.54386 -10.35821 -9.99717 -9.32047 -8.20980 -6.30645 0.96873 1.38610 1.41236 1.49355 1.64277 1.70573 1.77608 2.14067 2.41122 2.93597 3.11875 3.63141 3.75383 3.87342 3.91938 3.95231 3.98675 4.09184 4.09888 4.18798 4.19708 4.25110 4.27044 4.36987 4.42085 4.57402 4.61692 4.73510 4.80140 4.80870 4.88680 4.90699 4.95563 4.97334 4.98223 5.10470 5.11968 5.18317 5.20959 5.22757 5.31263 5.50133 5.54862 5.67343 5.75244 5.86311 6.14734 6.27471 6.31865 6.60423 6.75923 6.84199 7.34015 7.37967 8.90227 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.002848 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.793382 B = 9830.562055 C =11930.714684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 N -0.372 5.372 4 C 0.076 3.924 5 C -0.251 4.251 6 C 0.182 3.818 7 H 0.095 0.905 8 O -0.385 6.385 9 C 0.058 3.942 10 C -0.150 4.150 11 C -0.132 4.132 12 C 0.127 3.873 13 H 0.055 0.945 14 N -0.703 5.703 15 C 0.518 3.482 16 O -0.586 6.586 17 C -0.127 4.127 18 C -0.082 4.082 19 C 0.029 3.971 20 C -0.550 4.550 21 H 0.048 0.952 22 C 0.006 3.994 23 N -0.927 5.927 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.054 3.946 29 N -0.334 5.334 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.214 0.786 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.415 0.585 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.001 0.999 48 H 0.004 0.996 49 H 0.265 0.735 50 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.033 -2.851 -17.253 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 N -0.154 5.154 4 C -0.071 4.071 5 C -0.262 4.262 6 C 0.122 3.878 7 H 0.113 0.887 8 O -0.303 6.303 9 C -0.018 4.018 10 C -0.188 4.188 11 C -0.170 4.170 12 C 0.021 3.979 13 H 0.073 0.927 14 N -0.356 5.356 15 C 0.306 3.694 16 O -0.466 6.466 17 C -0.167 4.167 18 C -0.120 4.120 19 C -0.008 4.008 20 C -0.588 4.588 21 H 0.067 0.933 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.783 3.217 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.131 4.131 29 N -0.156 5.156 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.252 0.748 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.074 0.926 50 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 20.707 -2.986 -18.382 27.849 hybrid contribution -0.619 0.706 1.298 1.603 sum 20.088 -2.280 -17.084 26.468 Atomic orbital electron populations 1.22028 0.94612 1.03811 1.01737 1.22035 0.95469 0.76063 1.05951 1.48968 1.35000 1.10840 1.20604 1.22783 0.94341 0.93532 0.96487 1.19770 1.08975 0.95278 1.02223 1.20115 0.92288 0.87750 0.87601 0.88691 1.87978 1.61985 1.47034 1.33306 1.22818 0.91264 0.90011 0.97711 1.22188 1.00534 0.98923 0.97173 1.22014 0.99037 0.97502 0.98493 1.21477 0.95793 0.91437 0.89173 0.92651 1.45651 1.25954 1.23926 1.40085 1.21035 0.80029 0.86558 0.81804 1.90667 1.62312 1.26987 1.66591 1.21654 0.98415 0.98991 0.97654 1.21152 0.95107 0.98311 0.97474 1.18991 0.94414 0.94183 0.93232 1.21666 1.10469 1.04998 1.21690 0.93338 1.25864 1.01145 0.95407 0.96833 1.70045 1.41057 1.15239 1.30389 0.85599 0.79300 0.78534 0.78223 1.19640 1.20175 1.19433 1.23826 0.95104 0.97324 0.96857 1.77293 1.24772 0.97986 1.15559 0.93732 0.93380 0.88339 0.88654 0.85140 0.76902 0.90902 0.87107 0.88654 0.92472 0.93522 0.89337 0.74814 0.87661 0.86960 0.94213 0.94796 0.98105 0.97801 0.92607 0.80505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.10 71.98 0.73 -1.87 16 2 C 0.12 1.54 7.23 86.38 0.62 2.17 16 3 N -0.37 -7.20 3.68 -348.06 -1.28 -8.48 16 4 C 0.08 1.19 11.36 83.54 0.95 2.14 16 5 C -0.25 -4.95 4.82 -20.14 -0.10 -5.04 16 6 C 0.18 3.03 2.65 29.88 0.08 3.10 16 7 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 8 O -0.38 -6.97 10.12 -148.98 -1.51 -8.47 16 9 C 0.06 0.70 6.84 72.01 0.49 1.20 16 10 C -0.15 -2.21 6.14 30.69 0.19 -2.02 16 11 C -0.13 -2.46 5.61 30.72 0.17 -2.29 16 12 C 0.13 2.71 2.06 45.08 0.09 2.80 16 13 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 14 N -0.70 -14.93 4.73 -442.09 -2.09 -17.02 16 15 C 0.52 16.33 7.80 87.66 0.68 17.01 16 16 O -0.59 -24.47 15.65 -3.02 -0.05 -24.52 16 17 C -0.13 -4.05 5.70 29.85 0.17 -3.88 16 18 C -0.08 -3.66 4.44 30.60 0.14 -3.53 16 19 C 0.03 1.53 4.97 29.85 0.15 1.68 16 20 C -0.55 -32.62 9.11 25.60 0.23 -32.38 16 21 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 22 C 0.01 0.33 5.46 84.66 0.46 0.80 16 23 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 24 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 C 0.05 1.35 11.63 85.24 0.99 2.34 16 29 N -0.33 -8.78 12.42 -57.02 -0.71 -9.49 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.13 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.41 5.52 8.61 -92.71 -0.80 4.73 16 43 H 0.11 2.94 8.14 -2.39 -0.02 2.93 16 44 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 46 H 0.03 1.61 8.10 -2.38 -0.02 1.59 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 50 H 0.18 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -82.26 411.41 2.85 -79.41 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.12 Total: 14.66 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 6.05 Total: -17.77 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -3.79 Total: -90.69 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.55 Total: -32.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -82.26 2.85 -79.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594345259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.076 kcal (2) G-P(sol) polarization free energy of solvation -82.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds