Wall clock time and date at job start Tue Mar 31 2020 19:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47162 * 2 1 4 4 N 1.40083 * 126.03846 * 270.15115 * 3 2 1 5 5 C 1.30834 * 108.21046 * 180.23637 * 4 3 2 6 6 C 1.50691 * 125.90371 * 179.81988 * 5 4 3 7 7 C 1.39877 * 108.19908 * 359.78039 * 5 4 3 8 8 C 1.50698 * 126.04214 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47203 * 270.02674 * 8 7 5 10 10 O 1.20835 * 119.99780 * 359.97438 * 9 8 7 11 11 O 1.34230 * 120.00373 * 180.02562 * 9 8 7 12 12 C 1.45194 * 117.00051 * 179.97438 * 11 9 8 13 13 C 1.53038 * 109.45758 * 270.02432 * 12 11 9 14 14 C 1.53201 * 109.31084 * 178.60352 * 13 12 11 15 15 N 1.46922 * 108.76371 * 54.65734 * 14 13 12 16 16 C 1.36942 * 120.63245 * 126.40707 * 15 14 13 17 17 H 1.07993 * 119.99502 * 331.81980 * 16 15 14 18 18 C 1.38807 * 119.99963 * 151.81569 * 16 15 14 19 19 N 1.31621 * 120.00227 * 343.08713 * 18 16 15 20 20 Si 1.86807 * 119.99881 * 163.08008 * 18 16 15 21 21 H 1.48496 * 109.46955 * 60.00404 * 20 18 16 22 22 H 1.48498 * 109.47045 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46848 * 300.00485 * 20 18 16 24 24 C 1.46925 * 118.74038 * 306.37948 * 15 14 13 25 25 C 1.53038 * 109.45800 * 149.97117 * 12 11 9 26 26 C 1.34948 * 126.04001 * 90.00162 * 3 2 1 27 27 C 1.50699 * 126.12334 * 0.03335 * 26 3 2 28 28 H 1.09005 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47637 * 300.00227 * 1 2 3 30 30 H 1.09002 * 109.47187 * 60.00127 * 1 2 3 31 31 H 1.09001 * 109.46938 * 239.99604 * 2 1 3 32 32 H 1.09000 * 109.47142 * 120.00420 * 2 1 3 33 33 H 1.09010 * 109.47009 * 269.95424 * 6 5 4 34 34 H 1.08999 * 109.47230 * 29.94786 * 6 5 4 35 35 H 1.09000 * 109.47865 * 149.95621 * 6 5 4 36 36 H 1.09000 * 109.46670 * 30.02296 * 8 7 5 37 37 H 1.09000 * 109.47291 * 150.02255 * 8 7 5 38 38 H 1.08999 * 109.46131 * 29.99721 * 12 11 9 39 39 H 1.09008 * 109.50131 * 298.56554 * 13 12 11 40 40 H 1.08998 * 109.50145 * 58.66526 * 13 12 11 41 41 H 1.09001 * 109.59710 * 294.86766 * 14 13 12 42 42 H 1.09000 * 109.70043 * 174.50557 * 14 13 12 43 43 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.59062 * 293.82905 * 24 15 14 45 45 H 1.09001 * 109.70656 * 173.46911 * 24 15 14 46 46 H 1.08999 * 109.50135 * 301.33207 * 25 12 11 47 47 H 1.09003 * 109.50303 * 61.43528 * 25 12 11 48 48 H 1.09001 * 109.47443 * 269.69091 * 27 26 3 49 49 H 1.09002 * 109.47490 * 149.69408 * 27 26 3 50 50 H 1.09000 * 109.47517 * 29.69209 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2902 2.1592 -1.1327 5 6 2.7112 3.3314 -0.7322 6 6 3.1194 4.4757 -1.6237 7 6 2.7161 3.3393 0.6665 8 6 3.1311 4.4910 1.5453 9 6 4.6067 4.3951 1.8357 10 8 5.2548 3.4845 1.3765 11 8 5.2009 5.3206 2.6052 12 6 6.6247 5.1646 2.8431 13 6 6.8419 4.3164 4.0983 14 6 8.3446 4.1248 4.3265 15 7 8.9879 5.4449 4.3719 16 6 9.7759 5.8009 5.4338 17 1 9.5946 5.3725 6.4083 18 6 10.8078 6.7124 5.2574 19 7 11.2481 6.9819 4.0466 20 14 11.5716 7.5568 6.7384 21 1 12.1476 6.5345 7.6485 22 1 12.6448 8.4772 6.2845 23 1 10.5289 8.3302 7.4594 24 6 8.7701 6.3756 3.2561 25 6 7.2626 6.5417 3.0397 26 6 2.2830 2.1297 1.0912 27 6 2.1298 1.6943 2.5258 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.1854 4.4053 -1.8401 34 1 2.5557 4.4293 -2.5554 35 1 2.9124 5.4202 -1.1204 36 1 2.9216 5.4311 1.0350 37 1 2.5734 4.4534 2.4811 38 1 7.0840 4.6705 1.9870 39 1 6.4046 4.8220 4.9593 40 1 6.3671 3.3441 3.9670 41 1 8.7670 3.5404 3.5091 42 1 8.5096 3.6052 5.2704 43 1 11.9690 7.6192 3.9233 44 1 9.2271 5.9748 2.3514 45 1 9.2142 7.3427 3.4922 46 1 7.0874 7.1535 2.1547 47 1 6.8214 7.0262 3.9107 48 1 1.1256 1.9363 2.8738 49 1 2.8631 2.2130 3.1433 50 1 2.2899 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796985582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:03 Heat of formation + Delta-G solvation = -5.014961 kcal Electronic energy + Delta-G solvation = -29472.404312 eV Core-core repulsion = 25501.566208 eV Total energy + Delta-G solvation = -3970.838105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64136 -40.09111 -37.43978 -35.76156 -35.23617 -33.24911 -32.66063 -31.77463 -30.37425 -29.76897 -29.35112 -27.52630 -26.49219 -25.06832 -23.34034 -22.42887 -22.10087 -20.78751 -19.66489 -19.50980 -19.22092 -17.40316 -17.00244 -16.79338 -15.86934 -15.77771 -15.38416 -14.93222 -14.79148 -14.25575 -13.90294 -13.67800 -13.57587 -13.53780 -13.45262 -13.31168 -13.12845 -12.98991 -12.73577 -12.63022 -12.46595 -12.31728 -12.21875 -11.99787 -11.82237 -11.63861 -11.50279 -11.17032 -10.99551 -10.72330 -10.69986 -10.58598 -10.40079 -10.19466 -10.13892 -9.86754 -9.64237 -9.40096 -9.17208 -8.48494 -8.45281 -6.71877 -5.81009 -3.23819 1.68448 2.26779 2.45991 2.52756 3.26126 3.38827 3.44169 3.45474 4.16770 4.37834 4.48486 4.58198 4.64251 4.69970 4.84190 4.91571 4.98209 5.13450 5.18236 5.20377 5.27496 5.28959 5.29486 5.38336 5.42096 5.46396 5.53143 5.56704 5.57232 5.65502 5.77304 5.78843 5.89731 6.02116 6.03626 6.25373 6.43135 6.44136 6.53574 6.57301 6.62045 6.73985 6.87882 6.91484 7.03489 7.30367 7.59855 7.62414 7.77855 8.14235 8.42661 9.18466 9.81278 10.38216 11.28143 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.002252 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.681686 B =12432.798791 C =12936.728332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.369 5.369 4 N -0.298 5.298 5 C 0.094 3.906 6 C -0.076 4.076 7 C -0.229 4.229 8 C -0.032 4.032 9 C 0.453 3.547 10 O -0.502 6.502 11 O -0.360 6.360 12 C 0.099 3.901 13 C -0.145 4.145 14 C 0.149 3.851 15 N -0.592 5.592 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.174 3.826 25 C -0.135 4.135 26 C 0.105 3.895 27 C -0.095 4.095 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.060 0.940 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.377 -9.178 -7.087 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.151 5.151 4 N -0.120 5.120 5 C -0.073 4.073 6 C -0.135 4.135 7 C -0.240 4.240 8 C -0.071 4.071 9 C 0.295 3.705 10 O -0.390 6.390 11 O -0.277 6.277 12 C 0.045 3.955 13 C -0.184 4.184 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.048 3.952 25 C -0.175 4.175 26 C -0.022 4.022 27 C -0.153 4.153 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.297 -10.246 -8.263 26.758 hybrid contribution 0.724 0.701 1.332 1.670 sum -22.572 -9.545 -6.931 25.469 Atomic orbital electron populations 1.22181 0.94313 1.02990 1.03199 1.21632 0.95097 0.78094 1.04423 1.48400 1.51760 1.11713 1.03227 1.77289 1.23634 1.03518 1.07570 1.22115 0.97666 0.94251 0.93220 1.20213 1.02174 0.93284 0.97789 1.18988 1.15629 0.96199 0.93167 1.19498 0.89040 0.98105 1.00439 1.23687 0.91176 0.80027 0.75585 1.90650 1.65952 1.33397 1.48976 1.86551 1.27547 1.50291 1.63339 1.22881 0.75372 0.98871 0.98361 1.22442 1.00445 0.98345 0.97174 1.20856 0.88979 0.88749 0.99199 1.44107 1.55278 1.10131 1.22005 1.19143 1.07648 1.23634 0.87956 0.91599 1.25072 0.96273 1.01853 0.96424 1.70012 1.28229 1.36408 1.20108 0.86337 0.78535 0.79453 0.82250 1.20861 1.21613 1.20953 1.20807 0.87676 0.96898 0.89843 1.22446 1.00147 0.93573 1.01284 1.20753 0.99260 0.91486 0.90728 1.20498 1.03443 1.02283 0.89114 0.90535 0.92031 0.91624 0.88733 0.89014 0.90251 0.90873 0.90444 0.87317 0.87643 0.90511 0.91422 0.92845 0.96157 0.92183 0.93466 0.96062 0.88602 0.92415 0.91499 0.89989 0.89645 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.13 0.96 6.96 -4.05 -0.03 0.93 16 3 N -0.37 -4.23 3.61 -57.15 -0.21 -4.43 16 4 N -0.30 -4.09 12.57 33.67 0.42 -3.67 16 5 C 0.09 1.22 7.22 -82.41 -0.59 0.62 16 6 C -0.08 -0.77 10.26 36.00 0.37 -0.40 16 7 C -0.23 -2.82 4.59 -105.05 -0.48 -3.30 16 8 C -0.03 -0.35 5.72 -29.04 -0.17 -0.52 16 9 C 0.45 6.91 7.92 36.00 0.29 7.20 16 10 O -0.50 -9.33 15.25 -18.76 -0.29 -9.61 16 11 O -0.36 -5.97 9.88 -39.26 -0.39 -6.36 16 12 C 0.10 1.86 2.42 -26.69 -0.06 1.80 16 13 C -0.14 -2.72 5.72 -26.61 -0.15 -2.88 16 14 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 15 N -0.59 -15.02 2.99 -172.32 -0.52 -15.53 16 16 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 17 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 20 Si 0.90 21.56 29.59 -169.99 -5.03 16.54 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 25 C -0.14 -2.67 5.74 -26.61 -0.15 -2.82 16 26 C 0.11 1.19 6.93 -82.27 -0.57 0.62 16 27 C -0.10 -0.75 9.73 36.01 0.35 -0.40 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.51 7.05 -51.93 -0.37 0.14 16 33 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.63 7.26 -51.93 -0.38 0.26 16 36 H 0.11 0.97 7.26 -51.93 -0.38 0.59 16 37 H 0.11 0.91 7.77 -51.93 -0.40 0.51 16 38 H 0.08 1.56 7.16 -51.93 -0.37 1.19 16 39 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.10 2.53 6.07 -51.93 -0.31 2.21 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.74 7.78 -51.93 -0.40 0.33 16 50 H 0.07 0.48 7.07 -51.93 -0.37 0.11 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -34.09 403.54 -8.84 -42.93 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.44 Total: -0.93 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.10 Total: 0.50 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.32 Total: -49.14 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.67 Total: -15.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.09 -8.84 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796985582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.911 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds