Wall clock time and date at job start Tue Mar 31 2020 19:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41599 * 113.99816 * 2 1 4 4 C 1.46504 * 120.00081 * 271.55620 * 3 2 1 5 5 C 1.34777 * 120.00350 * 91.55959 * 3 2 1 6 6 O 1.21285 * 119.99671 * 5.28994 * 5 3 2 7 7 C 1.50698 * 120.00279 * 185.01229 * 5 3 2 8 8 H 1.09005 * 109.46896 * 39.21395 * 7 5 3 9 9 C 1.53004 * 109.47101 * 279.22027 * 7 5 3 10 10 N 1.46897 * 109.47184 * 159.22047 * 7 5 3 11 11 C 1.46903 * 110.99587 * 205.00212 * 10 7 5 12 12 C 1.50703 * 109.46957 * 179.97438 * 11 10 7 13 13 C 1.38287 * 119.92366 * 269.72684 * 12 11 10 14 14 C 1.38101 * 120.07438 * 179.72493 * 13 12 11 15 15 C 1.38912 * 119.92552 * 0.54675 * 14 13 12 16 16 N 1.39675 * 120.07686 * 179.75393 * 15 14 13 17 17 C 1.46495 * 120.00109 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00034 * 359.96630 * 16 15 14 19 19 C 1.50701 * 109.46923 * 90.00653 * 18 16 15 20 20 H 1.08004 * 119.99894 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31515 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00213 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47154 * 59.99440 * 23 21 19 25 25 H 1.48494 * 109.47162 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46921 * 299.99834 * 23 21 19 27 27 C 1.38910 * 119.85010 * 359.72162 * 15 14 13 28 28 C 1.38106 * 119.92461 * 0.02562 * 27 15 14 29 29 H 1.08994 * 109.47087 * 64.57846 * 1 2 3 30 30 H 1.09007 * 109.46905 * 184.57130 * 1 2 3 31 31 H 1.08995 * 109.47216 * 304.57141 * 1 2 3 32 32 H 1.08999 * 109.47343 * 270.00478 * 4 3 2 33 33 H 1.09001 * 109.46408 * 30.00101 * 4 3 2 34 34 H 1.08999 * 109.47258 * 149.99660 * 4 3 2 35 35 H 1.09004 * 109.46901 * 174.35366 * 9 7 5 36 36 H 1.09000 * 109.46831 * 294.35330 * 9 7 5 37 37 H 1.08996 * 109.47272 * 54.35031 * 9 7 5 38 38 H 1.00901 * 111.00069 * 328.94595 * 10 7 5 39 39 H 1.08995 * 109.47527 * 299.99262 * 11 10 7 40 40 H 1.09001 * 109.47458 * 59.99782 * 11 10 7 41 41 H 1.08007 * 119.96127 * 359.97302 * 13 12 11 42 42 H 1.08011 * 120.04191 * 180.26834 * 14 13 12 43 43 H 1.09006 * 109.47403 * 89.99211 * 17 16 15 44 44 H 1.08999 * 109.47103 * 209.99662 * 17 16 15 45 45 H 1.09004 * 109.46928 * 329.99458 * 17 16 15 46 46 H 1.08995 * 109.47694 * 210.00621 * 18 16 15 47 47 H 1.09002 * 109.47036 * 330.01238 * 18 16 15 48 48 H 0.96994 * 119.99948 * 180.02562 * 22 21 19 49 49 H 1.07995 * 120.04187 * 179.97438 * 27 15 14 50 50 H 1.08002 * 119.96250 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2713 1.9768 -1.2683 5 6 2.3080 1.8964 1.1667 6 8 2.1774 1.2949 2.2118 7 6 2.8151 3.3155 1.1723 8 1 2.2749 3.8972 0.4254 9 6 4.3092 3.3245 0.8428 10 7 2.6030 3.9060 2.5005 11 6 2.5115 5.3698 2.4172 12 6 2.2938 5.9388 3.7956 13 6 1.0082 6.1217 4.2713 14 6 0.8052 6.6375 5.5361 15 6 1.8940 6.9834 6.3265 16 7 1.6922 7.5102 7.6042 17 6 2.8416 7.8739 8.4365 18 6 0.3311 7.6992 8.1121 19 6 -0.1146 6.4517 8.8307 20 1 0.5497 5.6032 8.9023 21 6 -1.3705 6.3936 9.3967 22 7 -2.1793 7.4270 9.3100 23 14 -1.9226 4.8476 10.2880 24 1 -1.0045 4.5760 11.4231 25 1 -3.3023 5.0390 10.8027 26 1 -1.8997 3.6989 9.3471 27 6 3.1839 6.8036 5.8434 28 6 3.3799 6.2824 4.5796 29 1 -0.3633 0.4411 -0.9281 30 1 -0.3633 -1.0245 0.0819 31 1 -0.3633 0.5831 0.8462 32 1 3.2758 1.7284 -1.6108 33 1 1.5436 1.6559 -2.0136 34 1 2.1926 3.0544 -1.1241 35 1 4.6541 4.3541 0.7481 36 1 4.8604 2.8287 1.6419 37 1 4.4774 2.7970 -0.0960 38 1 1.7835 3.5172 2.9425 39 1 3.4366 5.7687 2.0012 40 1 1.6754 5.6457 1.7744 41 1 0.1621 5.8570 3.6544 42 1 -0.1991 6.7761 5.9088 43 1 3.1115 8.9132 8.2492 44 1 2.5826 7.7496 9.4880 45 1 3.6859 7.2294 8.1916 46 1 0.3148 8.5419 8.8031 47 1 -0.3430 7.8991 7.2792 48 1 -3.0627 7.3862 9.7085 49 1 4.0325 7.0719 6.4550 50 1 4.3825 6.1427 4.2032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858318270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:19 Heat of formation + Delta-G solvation = 17.707503 kcal Electronic energy + Delta-G solvation = -28645.911975 eV Core-core repulsion = 24676.059190 eV Total energy + Delta-G solvation = -3969.852785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34442 -39.01672 -37.61416 -36.51166 -35.32040 -34.09957 -32.71552 -31.20539 -30.43140 -28.83567 -27.77905 -27.69123 -26.71324 -25.83538 -24.34352 -23.20581 -22.06223 -21.46510 -20.01431 -19.58850 -17.99309 -17.57666 -16.64318 -16.51368 -16.39876 -16.08116 -15.20299 -15.05282 -14.85062 -14.55632 -14.28175 -14.20535 -14.03097 -13.68773 -13.59086 -13.42761 -13.22903 -12.97836 -12.86024 -12.60579 -12.47272 -12.34496 -12.19039 -12.11690 -11.74611 -11.60373 -11.38898 -11.22727 -10.94812 -10.90794 -10.73962 -10.65287 -10.26269 -9.93835 -9.87968 -9.74844 -9.34025 -8.86630 -8.52233 -8.49194 -8.25183 -6.46183 -6.00997 -4.16450 1.41241 2.12519 2.21327 2.23407 3.30206 3.33888 3.38542 3.88431 4.05001 4.15295 4.16999 4.42777 4.51723 4.62988 4.77932 4.80794 4.83109 4.92154 4.97068 5.10827 5.19551 5.22520 5.22755 5.31020 5.38640 5.48369 5.58015 5.63141 5.71938 5.83694 5.96684 6.02420 6.09011 6.29690 6.31803 6.39654 6.44155 6.65342 6.70319 6.87565 6.98071 7.05409 7.19696 7.22645 7.30191 7.37723 7.60975 7.82162 7.82693 8.16348 8.27559 8.49469 8.92634 9.50513 10.96465 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.002508 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.557911 B =11162.167415 C =12860.986037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.139 6.139 3 N -0.490 5.490 4 C 0.076 3.924 5 C 0.512 3.488 6 O -0.498 6.498 7 C 0.077 3.923 8 H 0.068 0.932 9 C -0.138 4.138 10 N -0.665 5.665 11 C 0.117 3.883 12 C -0.176 4.176 13 C -0.066 4.066 14 C -0.188 4.188 15 C 0.243 3.757 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.532 4.532 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.223 4.223 28 C -0.048 4.048 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.354 0.646 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.114 0.886 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -5.647 -23.108 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.141 6.141 3 N -0.272 5.272 4 C -0.065 4.065 5 C 0.299 3.701 6 O -0.369 6.369 7 C -0.036 4.036 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.300 5.300 11 C -0.011 4.011 12 C -0.179 4.179 13 C -0.085 4.085 14 C -0.210 4.210 15 C 0.136 3.864 16 N -0.320 5.320 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.570 4.570 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.246 4.246 28 C -0.067 4.067 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.132 0.868 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.980 -6.000 -22.064 24.948 hybrid contribution -1.730 -0.840 0.126 1.928 sum 8.249 -6.840 -21.938 24.416 Atomic orbital electron populations 1.23329 0.81675 1.04018 1.01065 1.90678 1.20037 1.06686 1.96714 1.49982 1.59994 1.10396 1.06873 1.22164 1.02466 0.97042 0.84782 1.21306 0.77598 0.88599 0.82575 1.90785 1.50675 1.64501 1.30929 1.21581 0.98739 0.89693 0.93595 0.91465 1.21791 0.92792 1.03258 1.01808 1.60571 1.47593 1.05372 1.16486 1.20749 1.00069 0.85797 0.94446 1.19076 0.93351 1.08769 0.96700 1.20643 0.95537 0.97310 0.95046 1.20837 0.98948 1.06556 0.94666 1.17971 0.93166 0.90056 0.85223 1.47112 1.07681 1.65103 1.12150 1.21480 0.89054 0.98246 0.95838 1.19279 0.76539 0.96656 0.94583 1.21554 0.99890 1.00575 1.35017 0.92271 1.24955 0.96387 0.96519 0.96168 1.69919 1.08599 1.29801 1.45199 0.86582 0.77590 0.83405 0.80068 1.20201 1.21206 1.20035 1.20575 0.95126 1.11050 0.97825 1.20482 0.97391 0.95812 0.93043 0.93197 0.87591 0.92618 0.91177 0.90370 0.89577 0.91009 0.90723 0.92109 0.82490 0.90694 0.95135 0.87539 0.85109 0.94597 0.91451 0.92612 0.95196 0.94656 0.92610 0.86844 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 11.46 101.05 1.16 1.14 16 2 O -0.14 -1.57 11.19 -29.59 -0.33 -1.90 16 3 N -0.49 -4.86 3.35 -67.08 -0.22 -5.08 16 4 C 0.08 0.38 9.83 59.85 0.59 0.97 16 5 C 0.51 6.26 6.89 -10.99 -0.08 6.19 16 6 O -0.50 -8.51 16.51 -12.57 -0.21 -8.72 16 7 C 0.08 0.74 2.23 -68.87 -0.15 0.59 16 8 H 0.07 0.47 6.09 -51.93 -0.32 0.15 16 9 C -0.14 -1.09 9.28 37.16 0.34 -0.75 16 10 N -0.66 -8.33 6.08 -109.22 -0.66 -8.99 16 11 C 0.12 1.37 5.61 -4.97 -0.03 1.34 16 12 C -0.18 -2.68 5.39 -104.58 -0.56 -3.25 16 13 C -0.07 -1.12 9.69 -39.61 -0.38 -1.51 16 14 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16 15 C 0.24 4.97 6.55 -83.79 -0.55 4.43 16 16 N -0.62 -13.32 2.99 -181.00 -0.54 -13.86 16 17 C 0.10 1.74 10.19 59.84 0.61 2.35 16 18 C 0.25 6.30 4.91 -5.19 -0.03 6.27 16 19 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 20 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 23 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 28 C -0.05 -0.75 9.69 -39.61 -0.38 -1.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.27 7.70 -51.93 -0.40 -0.13 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.28 5.90 -51.93 -0.31 -0.03 16 35 H 0.07 0.48 7.60 -51.93 -0.39 0.08 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.35 6.80 -51.93 -0.35 0.00 16 38 H 0.35 5.11 7.84 -39.29 -0.31 4.80 16 39 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 40 H 0.03 0.32 7.99 -51.93 -0.42 -0.10 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 42 H 0.13 2.94 6.14 -52.48 -0.32 2.62 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 45 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 48 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.11 1.81 6.14 -52.49 -0.32 1.48 16 50 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 408.59 15.07 6.16 6.16 Total: -1.00 -33.77 408.59 -8.64 -42.41 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.94 Total: 3.66 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.61 Total: -5.22 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.69 Total: -53.05 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.54 Total: -10.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.77 -8.64 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858318270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.113 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds