Wall clock time and date at job start Tue Mar 31 2020 19:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41599 * 113.99816 * 2 1 4 4 C 1.46504 * 120.00081 * 271.55620 * 3 2 1 5 5 C 1.34777 * 120.00350 * 91.55959 * 3 2 1 6 6 O 1.21285 * 119.99671 * 5.28994 * 5 3 2 7 7 C 1.50698 * 120.00279 * 185.01229 * 5 3 2 8 8 H 1.09005 * 109.46896 * 39.21395 * 7 5 3 9 9 C 1.53004 * 109.47101 * 279.22027 * 7 5 3 10 10 N 1.46897 * 109.47184 * 159.22047 * 7 5 3 11 11 C 1.46903 * 110.99587 * 205.00212 * 10 7 5 12 12 C 1.50703 * 109.46957 * 179.97438 * 11 10 7 13 13 C 1.38287 * 119.92366 * 269.72684 * 12 11 10 14 14 C 1.38101 * 120.07438 * 179.72493 * 13 12 11 15 15 C 1.38912 * 119.92552 * 0.54675 * 14 13 12 16 16 N 1.39675 * 120.07686 * 179.75393 * 15 14 13 17 17 C 1.46495 * 120.00109 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00034 * 359.96630 * 16 15 14 19 19 C 1.50701 * 109.46923 * 90.00653 * 18 16 15 20 20 H 1.08004 * 119.99894 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31515 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00213 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47154 * 59.99440 * 23 21 19 25 25 H 1.48494 * 109.47162 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46921 * 299.99834 * 23 21 19 27 27 C 1.38910 * 119.85010 * 359.72162 * 15 14 13 28 28 C 1.38106 * 119.92461 * 0.02562 * 27 15 14 29 29 H 1.08994 * 109.47087 * 64.57846 * 1 2 3 30 30 H 1.09007 * 109.46905 * 184.57130 * 1 2 3 31 31 H 1.08995 * 109.47216 * 304.57141 * 1 2 3 32 32 H 1.08999 * 109.47343 * 270.00478 * 4 3 2 33 33 H 1.09001 * 109.46408 * 30.00101 * 4 3 2 34 34 H 1.08999 * 109.47258 * 149.99660 * 4 3 2 35 35 H 1.09004 * 109.46901 * 174.35366 * 9 7 5 36 36 H 1.09000 * 109.46831 * 294.35330 * 9 7 5 37 37 H 1.08996 * 109.47272 * 54.35031 * 9 7 5 38 38 H 1.00901 * 111.00069 * 328.94595 * 10 7 5 39 39 H 1.08995 * 109.47527 * 299.99262 * 11 10 7 40 40 H 1.09001 * 109.47458 * 59.99782 * 11 10 7 41 41 H 1.08007 * 119.96127 * 359.97302 * 13 12 11 42 42 H 1.08011 * 120.04191 * 180.26834 * 14 13 12 43 43 H 1.09006 * 109.47403 * 89.99211 * 17 16 15 44 44 H 1.08999 * 109.47103 * 209.99662 * 17 16 15 45 45 H 1.09004 * 109.46928 * 329.99458 * 17 16 15 46 46 H 1.08995 * 109.47694 * 210.00621 * 18 16 15 47 47 H 1.09002 * 109.47036 * 330.01238 * 18 16 15 48 48 H 0.96994 * 119.99948 * 180.02562 * 22 21 19 49 49 H 1.07995 * 120.04187 * 179.97438 * 27 15 14 50 50 H 1.08002 * 119.96250 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2713 1.9768 -1.2683 5 6 2.3080 1.8964 1.1667 6 8 2.1774 1.2949 2.2118 7 6 2.8151 3.3155 1.1723 8 1 2.2749 3.8972 0.4254 9 6 4.3092 3.3245 0.8428 10 7 2.6030 3.9060 2.5005 11 6 2.5115 5.3698 2.4172 12 6 2.2938 5.9388 3.7956 13 6 1.0082 6.1217 4.2713 14 6 0.8052 6.6375 5.5361 15 6 1.8940 6.9834 6.3265 16 7 1.6922 7.5102 7.6042 17 6 2.8416 7.8739 8.4365 18 6 0.3311 7.6992 8.1121 19 6 -0.1146 6.4517 8.8307 20 1 0.5497 5.6032 8.9023 21 6 -1.3705 6.3936 9.3967 22 7 -2.1793 7.4270 9.3100 23 14 -1.9226 4.8476 10.2880 24 1 -1.0045 4.5760 11.4231 25 1 -3.3023 5.0390 10.8027 26 1 -1.8997 3.6989 9.3471 27 6 3.1839 6.8036 5.8434 28 6 3.3799 6.2824 4.5796 29 1 -0.3633 0.4411 -0.9281 30 1 -0.3633 -1.0245 0.0819 31 1 -0.3633 0.5831 0.8462 32 1 3.2758 1.7284 -1.6108 33 1 1.5436 1.6559 -2.0136 34 1 2.1926 3.0544 -1.1241 35 1 4.6541 4.3541 0.7481 36 1 4.8604 2.8287 1.6419 37 1 4.4774 2.7970 -0.0960 38 1 1.7835 3.5172 2.9425 39 1 3.4366 5.7687 2.0012 40 1 1.6754 5.6457 1.7744 41 1 0.1621 5.8570 3.6544 42 1 -0.1991 6.7761 5.9088 43 1 3.1115 8.9132 8.2492 44 1 2.5826 7.7496 9.4880 45 1 3.6859 7.2294 8.1916 46 1 0.3148 8.5419 8.8031 47 1 -0.3430 7.8991 7.2792 48 1 -3.0627 7.3862 9.7085 49 1 4.0325 7.0719 6.4550 50 1 4.3825 6.1427 4.2032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858318270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:18 Heat of formation + Delta-G solvation = -4.124293 kcal Electronic energy + Delta-G solvation = -28646.858672 eV Core-core repulsion = 24676.059190 eV Total energy + Delta-G solvation = -3970.799482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20020 -40.40032 -38.44700 -37.73384 -36.54252 -34.99279 -34.64965 -32.24515 -31.87029 -30.03330 -29.50703 -28.24872 -27.43720 -27.08291 -25.80477 -24.38683 -23.32414 -22.93569 -21.06063 -20.70785 -18.82577 -18.64881 -18.40877 -17.93696 -17.27114 -17.04542 -16.72600 -16.30130 -15.83131 -15.73967 -15.50629 -15.34590 -15.04717 -14.95524 -14.74192 -14.47737 -14.28490 -14.06858 -14.03812 -13.61598 -13.41259 -13.25629 -13.22352 -13.12336 -13.04534 -13.03576 -12.75625 -12.68657 -12.54045 -12.43778 -12.17155 -11.90539 -11.77065 -11.62873 -11.39254 -10.80773 -10.65840 -10.41649 -10.07439 -9.64941 -9.38819 -8.37741 -7.80322 -6.39019 0.67770 0.73373 0.88867 1.34817 1.36762 1.36999 1.45022 2.32573 2.63781 2.95413 3.04143 3.21179 3.40574 3.55873 3.95725 4.06539 4.07271 4.23809 4.26087 4.28669 4.29590 4.39638 4.42065 4.51869 4.58537 4.62363 4.65243 4.70109 4.72464 4.78168 4.87378 4.89283 4.95270 4.96189 5.02201 5.14274 5.19741 5.34358 5.37450 5.58668 5.61044 5.68539 5.70156 5.91796 5.94918 6.06020 6.13880 6.24913 6.27225 6.49724 6.81865 6.94281 7.00209 7.32778 8.81178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.002508 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.557911 B =11162.167415 C =12860.986037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.170 6.170 3 N -0.486 5.486 4 C 0.065 3.935 5 C 0.505 3.495 6 O -0.563 6.563 7 C 0.083 3.917 8 H 0.105 0.895 9 C -0.135 4.135 10 N -0.683 5.683 11 C 0.122 3.878 12 C -0.162 4.162 13 C -0.069 4.069 14 C -0.218 4.218 15 C 0.212 3.788 16 N -0.633 5.633 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.046 0.954 21 C 0.014 3.986 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.220 4.220 28 C -0.046 4.046 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.339 0.661 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.010 0.990 47 H 0.011 0.989 48 H 0.268 0.732 49 H 0.132 0.868 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.410 -6.126 -26.204 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.173 6.173 3 N -0.267 5.267 4 C -0.074 4.074 5 C 0.294 3.706 6 O -0.439 6.439 7 C -0.030 4.030 8 H 0.122 0.878 9 C -0.193 4.193 10 N -0.317 5.317 11 C -0.006 4.006 12 C -0.164 4.164 13 C -0.088 4.088 14 C -0.241 4.241 15 C 0.107 3.893 16 N -0.341 5.341 17 C -0.045 4.045 18 C 0.146 3.854 19 C -0.581 4.581 20 H 0.064 0.936 21 C -0.185 4.185 22 N -0.565 5.565 23 Si 0.783 3.217 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.242 4.242 28 C -0.065 4.065 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.158 0.842 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.140 0.860 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.028 0.972 47 H 0.029 0.971 48 H 0.077 0.923 49 H 0.150 0.850 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.908 -6.474 -25.248 28.656 hybrid contribution -2.272 -0.735 0.874 2.543 sum 9.635 -7.209 -24.374 27.183 Atomic orbital electron populations 1.23439 0.80172 1.04927 1.01409 1.90610 1.21669 1.08156 1.96846 1.50209 1.58856 1.09666 1.08006 1.22576 1.03924 0.97943 0.82916 1.21912 0.76823 0.89513 0.82314 1.90753 1.53697 1.66123 1.33308 1.21722 1.00207 0.88060 0.92993 0.87784 1.21819 0.90914 1.04607 1.01956 1.60544 1.46986 1.05640 1.18541 1.20797 1.02265 0.85336 0.92160 1.19521 0.92187 1.06431 0.98304 1.20855 0.97408 0.96621 0.93926 1.20753 0.97490 1.09213 0.96676 1.18256 0.94502 0.91611 0.84955 1.46969 1.06862 1.66840 1.13385 1.21601 0.88391 0.99831 0.94670 1.18754 0.78728 0.94982 0.92958 1.21753 1.00078 1.00960 1.35335 0.93554 1.25742 0.96416 0.99463 0.96875 1.70019 1.08962 1.31552 1.45987 0.85603 0.77629 0.79517 0.78919 1.19354 1.20101 1.20187 1.20836 0.94183 1.10365 0.98853 1.20923 0.99168 0.94298 0.92124 0.90664 0.86130 0.94698 0.89611 0.88733 0.87167 0.88907 0.93332 0.89779 0.84214 0.87924 0.93278 0.85992 0.88862 0.92731 0.92643 0.90433 0.97181 0.97064 0.92328 0.85024 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 11.46 113.37 1.30 1.27 16 2 O -0.17 -3.72 11.19 -21.45 -0.24 -3.96 16 3 N -0.49 -8.71 3.35 -484.51 -1.62 -10.34 16 4 C 0.07 0.39 9.83 127.77 1.26 1.65 16 5 C 0.51 11.76 6.89 87.66 0.60 12.37 16 6 O -0.56 -19.69 16.51 14.28 0.24 -19.46 16 7 C 0.08 1.32 2.23 44.17 0.10 1.42 16 8 H 0.10 0.91 6.09 -2.38 -0.01 0.90 16 9 C -0.13 -1.61 9.28 71.98 0.67 -0.94 16 10 N -0.68 -15.43 6.08 -499.45 -3.04 -18.47 16 11 C 0.12 2.36 5.61 85.56 0.48 2.84 16 12 C -0.16 -4.55 5.39 -19.84 -0.11 -4.65 16 13 C -0.07 -2.34 9.69 22.25 0.22 -2.12 16 14 C -0.22 -9.34 9.21 22.40 0.21 -9.13 16 15 C 0.21 8.86 6.55 38.21 0.25 9.11 16 16 N -0.63 -28.49 2.99 -726.56 -2.17 -30.66 16 17 C 0.10 3.51 10.19 127.77 1.30 4.81 16 18 C 0.27 14.39 4.91 85.63 0.42 14.81 16 19 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 20 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 21 C 0.01 0.83 5.46 84.65 0.46 1.29 16 22 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 23 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 C -0.22 -7.42 9.21 22.40 0.21 -7.22 16 28 C -0.05 -1.31 9.69 22.25 0.22 -1.10 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.30 7.70 -2.39 -0.02 0.28 16 33 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.11 0.14 5.90 -2.39 -0.01 0.12 16 35 H 0.09 0.74 7.60 -2.39 -0.02 0.72 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.61 6.80 -2.39 -0.02 0.59 16 38 H 0.34 9.52 7.84 -89.69 -0.70 8.81 16 39 H 0.10 1.49 7.49 -2.39 -0.02 1.47 16 40 H 0.05 0.80 7.99 -2.39 -0.02 0.78 16 41 H 0.12 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.09 4.60 6.14 -2.91 -0.02 4.59 16 43 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 44 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 45 H 0.08 2.38 6.20 -2.38 -0.01 2.37 16 46 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 47 H 0.01 0.66 6.20 -2.39 -0.01 0.64 16 48 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.13 3.88 6.14 -2.91 -0.02 3.86 16 50 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -79.43 408.59 3.53 -75.90 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.24 Total: 21.18 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 7.82 Total: -6.75 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -6.55 Total: -114.41 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.00 Total: -23.42 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -79.43 3.53 -75.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858318270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.772 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds