Wall clock time and date at job start Tue Mar 31 2020 19:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.41599 * 114.00014 * 2 1 4 4 C 1.46497 * 120.00317 * 270.00363 * 3 2 1 5 5 C 1.34778 * 119.99564 * 89.99869 * 3 2 1 6 6 O 1.21281 * 120.00085 * 179.97438 * 5 3 2 7 7 C 1.50700 * 120.00358 * 0.02562 * 5 3 2 8 8 H 1.09002 * 109.46980 * 299.99852 * 7 5 3 9 9 C 1.53001 * 109.46911 * 59.99830 * 7 5 3 10 10 N 1.46906 * 109.47327 * 179.97438 * 7 5 3 11 11 C 1.46899 * 111.00049 * 154.99976 * 10 7 5 12 12 C 1.50699 * 109.47104 * 180.02562 * 11 10 7 13 13 C 1.38286 * 119.92533 * 90.00165 * 12 11 10 14 14 C 1.38104 * 120.07376 * 180.25715 * 13 12 11 15 15 C 1.38918 * 119.92017 * 359.44392 * 14 13 12 16 16 N 1.39676 * 120.07049 * 180.30184 * 15 14 13 17 17 C 1.46502 * 119.99924 * 180.25823 * 16 15 14 18 18 C 1.46500 * 120.00213 * 0.25045 * 16 15 14 19 19 C 1.50692 * 109.47029 * 90.00163 * 18 16 15 20 20 H 1.07998 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00178 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46851 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46927 * 119.99712 * 23 21 19 26 26 H 1.48498 * 109.47132 * 239.99635 * 23 21 19 27 27 C 1.38905 * 119.85194 * 0.55157 * 15 14 13 28 28 C 1.38099 * 119.92845 * 359.72525 * 27 15 14 29 29 H 1.08999 * 109.47191 * 299.99754 * 1 2 3 30 30 H 1.08998 * 109.47237 * 60.00060 * 1 2 3 31 31 H 1.09007 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46668 * 269.99756 * 4 3 2 33 33 H 1.08998 * 109.47172 * 29.99399 * 4 3 2 34 34 H 1.09002 * 109.47117 * 149.99938 * 4 3 2 35 35 H 1.08995 * 109.47460 * 60.00515 * 9 7 5 36 36 H 1.08999 * 109.46823 * 180.02562 * 9 7 5 37 37 H 1.08992 * 109.47116 * 299.99824 * 9 7 5 38 38 H 1.00897 * 110.99569 * 278.95205 * 10 7 5 39 39 H 1.09006 * 109.47061 * 59.99820 * 11 10 7 40 40 H 1.09004 * 109.46817 * 300.00324 * 11 10 7 41 41 H 1.08002 * 119.96057 * 359.97173 * 13 12 11 42 42 H 1.07998 * 120.04042 * 179.72222 * 14 13 12 43 43 H 1.08990 * 109.47426 * 89.99418 * 17 16 15 44 44 H 1.09005 * 109.46823 * 210.00050 * 17 16 15 45 45 H 1.09005 * 109.46514 * 329.99017 * 17 16 15 46 46 H 1.09003 * 109.47215 * 210.00592 * 18 16 15 47 47 H 1.09002 * 109.46876 * 330.00328 * 18 16 15 48 48 H 0.96995 * 119.99824 * 180.02562 * 22 21 19 49 49 H 1.08006 * 120.03717 * 179.70113 * 27 15 14 50 50 H 1.07997 * 119.96598 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9628 -1.2687 5 6 2.2789 1.9091 1.1673 6 8 2.7727 3.0169 1.1674 7 6 1.9730 1.2205 2.4723 8 1 0.9051 1.0097 2.5302 9 6 2.7569 -0.0909 2.5531 10 7 2.3617 2.0924 3.5890 11 6 1.5875 1.7774 4.7970 12 6 2.0125 2.6902 5.9182 13 6 1.3709 3.9013 6.1026 14 6 1.7613 4.7426 7.1258 15 6 2.7922 4.3659 7.9775 16 7 3.1854 5.2115 9.0172 17 6 4.2764 4.8152 9.9110 18 6 2.5069 6.4950 9.2140 19 6 1.3378 6.3073 10.1462 20 1 1.1220 5.3300 10.5518 21 6 0.5436 7.3835 10.4812 22 7 0.8066 8.5739 9.9877 23 14 -0.9052 7.1511 11.6373 24 1 -0.9852 5.7270 12.0506 25 1 -0.7226 8.0059 12.8378 26 1 -2.1599 7.5355 10.9421 27 6 3.4344 3.1486 7.7894 28 6 3.0428 2.3146 6.7607 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.3155 1.7108 -1.5833 33 1 1.5938 1.6337 -2.0283 34 1 2.2208 3.0419 -1.1382 35 1 3.8247 0.1200 2.4952 36 1 2.5353 -0.5891 3.4968 37 1 2.4689 -0.7379 1.7246 38 1 3.3527 2.0303 3.7681 39 1 1.7671 0.7411 5.0837 40 1 0.5258 1.9198 4.5956 41 1 0.5666 4.1916 5.4428 42 1 1.2629 5.6903 7.2665 43 1 5.2243 5.1708 9.5072 44 1 4.1150 5.2511 10.8969 45 1 4.3016 3.7286 9.9939 46 1 3.2047 7.2124 9.6461 47 1 2.1500 6.8682 8.2541 48 1 0.2481 9.3309 10.2237 49 1 4.2394 2.8549 8.4468 50 1 3.5419 1.3683 6.6138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858325670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:22 Heat of formation + Delta-G solvation = 17.054757 kcal Electronic energy + Delta-G solvation = -28597.456298 eV Core-core repulsion = 24627.575209 eV Total energy + Delta-G solvation = -3969.881090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25106 -38.99688 -37.73220 -36.75481 -35.29589 -33.29717 -32.74137 -31.46486 -30.40232 -28.82477 -27.78496 -27.71130 -26.73771 -25.70512 -24.19540 -23.10920 -21.98519 -21.50623 -20.53874 -19.59351 -18.00845 -17.18041 -16.62358 -16.43859 -16.41056 -15.74470 -15.25005 -15.02705 -14.78634 -14.62344 -14.39573 -14.19242 -14.12429 -13.68860 -13.47153 -13.42298 -13.07218 -12.96502 -12.84673 -12.75992 -12.55092 -12.27472 -12.14144 -11.89005 -11.72679 -11.66014 -11.37919 -11.23605 -10.96701 -10.93504 -10.74161 -10.67501 -10.24692 -9.94390 -9.85045 -9.73166 -9.34775 -8.82565 -8.49309 -8.38800 -8.22134 -6.44204 -5.99707 -4.15636 1.51173 2.15811 2.23630 2.33250 3.26084 3.34101 3.38935 3.52489 4.17619 4.22843 4.42819 4.58909 4.67625 4.70234 4.77480 4.79974 4.86323 4.89974 5.09532 5.14091 5.23035 5.24804 5.30190 5.37471 5.44599 5.48972 5.59996 5.62600 5.76751 5.85282 5.88740 6.02077 6.06152 6.11727 6.30296 6.42603 6.47520 6.67422 6.78657 6.98427 7.05690 7.11564 7.21062 7.30207 7.36993 7.42197 7.64173 7.82953 7.86013 8.17653 8.29451 8.51817 8.93737 9.51038 10.97389 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.002106 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.776243 B =13289.835091 C =13780.100805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.143 6.143 3 N -0.488 5.488 4 C 0.086 3.914 5 C 0.527 3.473 6 O -0.493 6.493 7 C 0.074 3.926 8 H 0.100 0.900 9 C -0.180 4.180 10 N -0.664 5.664 11 C 0.119 3.881 12 C -0.174 4.174 13 C -0.048 4.048 14 C -0.188 4.188 15 C 0.243 3.757 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.248 3.752 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.282 1.282 27 C -0.222 4.222 28 C -0.066 4.066 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.350 0.650 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.037 0.963 48 H 0.263 0.737 49 H 0.113 0.887 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -19.206 -19.184 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.147 6.147 3 N -0.270 5.270 4 C -0.054 4.054 5 C 0.315 3.685 6 O -0.365 6.365 7 C -0.040 4.040 8 H 0.117 0.883 9 C -0.239 4.239 10 N -0.296 5.296 11 C -0.009 4.009 12 C -0.177 4.177 13 C -0.067 4.067 14 C -0.211 4.211 15 C 0.136 3.864 16 N -0.321 5.321 17 C -0.046 4.046 18 C 0.128 3.872 19 C -0.569 4.569 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.246 4.246 28 C -0.086 4.086 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.169 0.831 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.130 0.870 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.653 -17.868 -19.163 26.253 hybrid contribution -0.838 -0.878 0.884 1.502 sum 0.815 -18.746 -18.279 26.195 Atomic orbital electron populations 1.23418 0.81763 1.03969 1.01624 1.90618 1.20018 1.07368 1.96673 1.50150 1.59813 1.10234 1.06831 1.21871 1.01449 0.98188 0.83905 1.20972 0.77836 0.85304 0.84350 1.90786 1.42145 1.18196 1.85368 1.21376 1.01338 0.91390 0.89899 0.88258 1.22490 1.00690 0.97183 1.03531 1.60253 1.10619 1.54020 1.04708 1.20692 0.97465 0.95484 0.87248 1.19099 1.01581 0.97653 0.99358 1.20635 0.97833 0.92600 0.95667 1.20895 1.00291 1.02219 0.97670 1.17966 0.91823 0.89214 0.87439 1.47102 1.35839 1.20372 1.28784 1.21470 0.89230 0.99443 0.94427 1.19297 0.91890 0.78709 0.97282 1.21613 1.12088 0.95098 1.28065 0.92221 1.24977 0.97798 0.95038 0.96356 1.69945 1.39375 0.99684 1.44350 0.86469 0.82346 0.78240 0.80579 1.19752 1.20967 1.20851 1.20504 1.05353 0.95750 1.02943 1.20490 0.95722 0.97909 0.94450 0.92709 0.92757 0.87454 0.91733 0.90753 0.89375 0.92073 0.91578 0.90170 0.83069 0.95047 0.91010 0.87052 0.85080 0.94614 0.91478 0.92715 0.95201 0.94547 0.92706 0.86951 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.44 101.05 1.16 1.11 16 2 O -0.14 -1.08 8.79 -11.47 -0.10 -1.18 16 3 N -0.49 -4.54 3.34 -67.08 -0.22 -4.76 16 4 C 0.09 0.63 10.82 59.85 0.65 1.28 16 5 C 0.53 6.27 7.18 -10.99 -0.08 6.20 16 6 O -0.49 -7.80 16.01 5.56 0.09 -7.71 16 7 C 0.07 0.75 2.59 -68.86 -0.18 0.57 16 8 H 0.10 0.89 6.79 -51.93 -0.35 0.54 16 9 C -0.18 -1.47 9.01 37.16 0.33 -1.14 16 10 N -0.66 -8.35 5.73 -109.21 -0.63 -8.98 16 11 C 0.12 1.47 5.61 -4.98 -0.03 1.44 16 12 C -0.17 -2.73 5.40 -104.59 -0.56 -3.29 16 13 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 14 C -0.19 -3.93 9.21 -39.38 -0.36 -4.29 16 15 C 0.24 5.03 6.55 -83.79 -0.55 4.48 16 16 N -0.62 -13.45 2.99 -181.00 -0.54 -13.99 16 17 C 0.10 1.76 10.19 59.85 0.61 2.37 16 18 C 0.25 6.33 4.92 -5.20 -0.03 6.30 16 19 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 20 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 23 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.22 -3.92 9.21 -39.39 -0.36 -4.28 16 28 C -0.07 -1.03 9.69 -39.61 -0.38 -1.42 16 29 H 0.05 0.28 7.13 -51.93 -0.37 -0.09 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.72 7.42 -51.93 -0.39 0.34 16 35 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 36 H 0.07 0.49 7.45 -51.93 -0.39 0.11 16 37 H 0.08 0.61 6.03 -51.93 -0.31 0.30 16 38 H 0.35 4.46 8.46 -39.29 -0.33 4.12 16 39 H 0.03 0.34 7.38 -51.93 -0.38 -0.05 16 40 H 0.07 0.86 8.00 -51.93 -0.42 0.44 16 41 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.13 3.02 6.14 -52.49 -0.32 2.69 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 46 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 47 H 0.04 0.99 6.19 -51.93 -0.32 0.67 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.11 1.79 6.14 -52.48 -0.32 1.46 16 50 H 0.10 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -32.44 407.88 -8.12 -40.56 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.99 Total: 3.91 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.59 Total: -5.26 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.65 Total: -52.90 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.01 Total: -8.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.44 -8.12 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858325670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.615 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds