Wall clock time and date at job start Tue Mar 31 2020 19:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.41599 * 114.00014 * 2 1 4 4 C 1.46497 * 120.00317 * 270.00363 * 3 2 1 5 5 C 1.34778 * 119.99564 * 89.99869 * 3 2 1 6 6 O 1.21281 * 120.00085 * 179.97438 * 5 3 2 7 7 C 1.50700 * 120.00358 * 0.02562 * 5 3 2 8 8 H 1.09002 * 109.46980 * 299.99852 * 7 5 3 9 9 C 1.53001 * 109.46911 * 59.99830 * 7 5 3 10 10 N 1.46906 * 109.47327 * 179.97438 * 7 5 3 11 11 C 1.46899 * 111.00049 * 154.99976 * 10 7 5 12 12 C 1.50699 * 109.47104 * 180.02562 * 11 10 7 13 13 C 1.38286 * 119.92533 * 90.00165 * 12 11 10 14 14 C 1.38104 * 120.07376 * 180.25715 * 13 12 11 15 15 C 1.38918 * 119.92017 * 359.44392 * 14 13 12 16 16 N 1.39676 * 120.07049 * 180.30184 * 15 14 13 17 17 C 1.46502 * 119.99924 * 180.25823 * 16 15 14 18 18 C 1.46500 * 120.00213 * 0.25045 * 16 15 14 19 19 C 1.50692 * 109.47029 * 90.00163 * 18 16 15 20 20 H 1.07998 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00178 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46851 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46927 * 119.99712 * 23 21 19 26 26 H 1.48498 * 109.47132 * 239.99635 * 23 21 19 27 27 C 1.38905 * 119.85194 * 0.55157 * 15 14 13 28 28 C 1.38099 * 119.92845 * 359.72525 * 27 15 14 29 29 H 1.08999 * 109.47191 * 299.99754 * 1 2 3 30 30 H 1.08998 * 109.47237 * 60.00060 * 1 2 3 31 31 H 1.09007 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46668 * 269.99756 * 4 3 2 33 33 H 1.08998 * 109.47172 * 29.99399 * 4 3 2 34 34 H 1.09002 * 109.47117 * 149.99938 * 4 3 2 35 35 H 1.08995 * 109.47460 * 60.00515 * 9 7 5 36 36 H 1.08999 * 109.46823 * 180.02562 * 9 7 5 37 37 H 1.08992 * 109.47116 * 299.99824 * 9 7 5 38 38 H 1.00897 * 110.99569 * 278.95205 * 10 7 5 39 39 H 1.09006 * 109.47061 * 59.99820 * 11 10 7 40 40 H 1.09004 * 109.46817 * 300.00324 * 11 10 7 41 41 H 1.08002 * 119.96057 * 359.97173 * 13 12 11 42 42 H 1.07998 * 120.04042 * 179.72222 * 14 13 12 43 43 H 1.08990 * 109.47426 * 89.99418 * 17 16 15 44 44 H 1.09005 * 109.46823 * 210.00050 * 17 16 15 45 45 H 1.09005 * 109.46514 * 329.99017 * 17 16 15 46 46 H 1.09003 * 109.47215 * 210.00592 * 18 16 15 47 47 H 1.09002 * 109.46876 * 330.00328 * 18 16 15 48 48 H 0.96995 * 119.99824 * 180.02562 * 22 21 19 49 49 H 1.08006 * 120.03717 * 179.70113 * 27 15 14 50 50 H 1.07997 * 119.96598 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9628 -1.2687 5 6 2.2789 1.9091 1.1673 6 8 2.7727 3.0169 1.1674 7 6 1.9730 1.2205 2.4723 8 1 0.9051 1.0097 2.5302 9 6 2.7569 -0.0909 2.5531 10 7 2.3617 2.0924 3.5890 11 6 1.5875 1.7774 4.7970 12 6 2.0125 2.6902 5.9182 13 6 1.3709 3.9013 6.1026 14 6 1.7613 4.7426 7.1258 15 6 2.7922 4.3659 7.9775 16 7 3.1854 5.2115 9.0172 17 6 4.2764 4.8152 9.9110 18 6 2.5069 6.4950 9.2140 19 6 1.3378 6.3073 10.1462 20 1 1.1220 5.3300 10.5518 21 6 0.5436 7.3835 10.4812 22 7 0.8066 8.5739 9.9877 23 14 -0.9052 7.1511 11.6373 24 1 -0.9852 5.7270 12.0506 25 1 -0.7226 8.0059 12.8378 26 1 -2.1599 7.5355 10.9421 27 6 3.4344 3.1486 7.7894 28 6 3.0428 2.3146 6.7607 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.3155 1.7108 -1.5833 33 1 1.5938 1.6337 -2.0283 34 1 2.2208 3.0419 -1.1382 35 1 3.8247 0.1200 2.4952 36 1 2.5353 -0.5891 3.4968 37 1 2.4689 -0.7379 1.7246 38 1 3.3527 2.0303 3.7681 39 1 1.7671 0.7411 5.0837 40 1 0.5258 1.9198 4.5956 41 1 0.5666 4.1916 5.4428 42 1 1.2629 5.6903 7.2665 43 1 5.2243 5.1708 9.5072 44 1 4.1150 5.2511 10.8969 45 1 4.3016 3.7286 9.9939 46 1 3.2047 7.2124 9.6461 47 1 2.1500 6.8682 8.2541 48 1 0.2481 9.3309 10.2237 49 1 4.2394 2.8549 8.4468 50 1 3.5419 1.3683 6.6138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858325670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:21 Heat of formation + Delta-G solvation = -3.710890 kcal Electronic energy + Delta-G solvation = -28598.356764 eV Core-core repulsion = 24627.575209 eV Total energy + Delta-G solvation = -3970.781556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08715 -40.40478 -38.44090 -37.93978 -36.62271 -34.76823 -33.98770 -32.57494 -31.87355 -30.06975 -29.53339 -28.27990 -27.31284 -27.07017 -25.71993 -24.19903 -23.30509 -22.98694 -21.32037 -21.02391 -18.85684 -18.64109 -18.01759 -17.90541 -17.07237 -16.91425 -16.70120 -16.13569 -15.95622 -15.54754 -15.35460 -15.32647 -15.21648 -15.13880 -14.71944 -14.46139 -14.27966 -14.06851 -14.03660 -13.64135 -13.58853 -13.30084 -13.18378 -13.06917 -13.00665 -12.82233 -12.77399 -12.66414 -12.54864 -12.40899 -12.26163 -11.93809 -11.71449 -11.53484 -11.40405 -10.79671 -10.65258 -10.41082 -10.08301 -9.64975 -9.27445 -8.36284 -7.79828 -6.37946 0.73224 0.80190 0.93164 1.35869 1.37113 1.47480 1.49836 2.34122 2.64148 2.77400 3.05705 3.12928 3.53433 3.95126 4.04521 4.06571 4.13095 4.21018 4.24607 4.36796 4.40380 4.44596 4.46358 4.48107 4.54047 4.66251 4.71747 4.73308 4.78799 4.82469 4.83620 4.84885 4.88076 4.92842 5.02578 5.13203 5.21062 5.25223 5.34034 5.35946 5.59977 5.66149 5.70563 5.92433 6.00468 6.06871 6.23244 6.36737 6.47337 6.50577 6.82818 6.94609 7.04627 7.33920 8.83464 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.002106 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.776243 B =13289.835091 C =13780.100805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.144 6.144 3 N -0.486 5.486 4 C 0.082 3.918 5 C 0.521 3.479 6 O -0.546 6.546 7 C 0.077 3.923 8 H 0.114 0.886 9 C -0.170 4.170 10 N -0.684 5.684 11 C 0.125 3.875 12 C -0.160 4.160 13 C -0.056 4.056 14 C -0.219 4.219 15 C 0.212 3.788 16 N -0.633 5.633 17 C 0.098 3.902 18 C 0.266 3.734 19 C -0.539 4.539 20 H 0.050 0.950 21 C 0.009 3.991 22 N -0.928 5.928 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.277 1.277 27 C -0.217 4.217 28 C -0.058 4.058 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.135 0.865 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.348 0.652 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.008 0.992 47 H 0.008 0.992 48 H 0.267 0.733 49 H 0.134 0.866 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 -23.194 -19.865 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.148 6.148 3 N -0.267 5.267 4 C -0.058 4.058 5 C 0.310 3.690 6 O -0.422 6.422 7 C -0.036 4.036 8 H 0.132 0.868 9 C -0.228 4.228 10 N -0.316 5.316 11 C -0.002 4.002 12 C -0.163 4.163 13 C -0.076 4.076 14 C -0.242 4.242 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.144 3.856 19 C -0.577 4.577 20 H 0.069 0.931 21 C -0.190 4.190 22 N -0.568 5.568 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.203 1.203 27 C -0.240 4.240 28 C -0.077 4.077 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.167 0.833 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.076 0.924 49 H 0.152 0.848 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.178 -21.924 -19.887 29.623 hybrid contribution -0.716 0.229 0.904 1.176 sum 0.463 -21.694 -18.983 28.831 Atomic orbital electron populations 1.23655 0.80065 1.05799 1.01829 1.90609 1.21716 1.05789 1.96717 1.50077 1.59105 1.10769 1.06716 1.21996 1.02646 0.97379 0.83758 1.21322 0.77218 0.84830 0.85587 1.90761 1.44709 1.20388 1.86321 1.21419 1.02424 0.91571 0.88162 0.86783 1.22408 0.99859 0.95957 1.04625 1.60124 1.10543 1.55633 1.05290 1.20661 0.97628 0.95924 0.86017 1.19503 1.00325 0.96683 0.99804 1.20785 0.98423 0.93384 0.94966 1.20769 1.01684 1.01741 0.99989 1.18247 0.92842 0.90583 0.87601 1.46963 1.37079 1.19536 1.30466 1.21604 0.88592 1.00979 0.93292 1.18770 0.91167 0.80513 0.95151 1.21793 1.12962 0.94696 1.28292 0.93144 1.25840 1.00546 0.94671 0.97933 1.70058 1.40639 1.00495 1.45613 0.85408 0.78767 0.78328 0.78569 1.19335 1.19918 1.20308 1.20798 1.05176 0.94367 1.03643 1.20948 0.95002 0.98888 0.92860 0.92955 0.92141 0.84703 0.91187 0.88106 0.90808 0.92767 0.90077 0.89445 0.83300 0.92073 0.90507 0.86525 0.89016 0.93080 0.92496 0.90131 0.97353 0.97414 0.92405 0.84785 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.11 11.44 113.37 1.30 1.19 16 2 O -0.14 -1.78 8.79 -38.78 -0.34 -2.12 16 3 N -0.49 -8.30 3.34 -484.52 -1.62 -9.92 16 4 C 0.08 1.11 10.82 127.77 1.38 2.49 16 5 C 0.52 11.92 7.18 87.66 0.63 12.55 16 6 O -0.55 -17.52 16.01 -3.03 -0.05 -17.56 16 7 C 0.08 1.39 2.59 44.17 0.11 1.51 16 8 H 0.11 1.70 6.79 -2.39 -0.02 1.68 16 9 C -0.17 -2.22 9.01 71.98 0.65 -1.57 16 10 N -0.68 -15.76 5.73 -499.44 -2.86 -18.62 16 11 C 0.13 2.68 5.61 85.56 0.48 3.16 16 12 C -0.16 -4.69 5.40 -19.84 -0.11 -4.79 16 13 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 14 C -0.22 -9.66 9.21 22.40 0.21 -9.46 16 15 C 0.21 8.97 6.55 38.21 0.25 9.22 16 16 N -0.63 -28.67 2.99 -726.56 -2.17 -30.84 16 17 C 0.10 3.50 10.19 127.77 1.30 4.80 16 18 C 0.27 14.46 4.92 85.63 0.42 14.88 16 19 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.01 0.52 5.46 84.65 0.46 0.98 16 22 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 23 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 C -0.22 -7.24 9.21 22.40 0.21 -7.04 16 28 C -0.06 -1.61 9.69 22.25 0.22 -1.40 16 29 H 0.05 0.40 7.13 -2.39 -0.02 0.38 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.14 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.23 7.42 -2.39 -0.02 1.21 16 35 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 36 H 0.08 0.84 7.45 -2.39 -0.02 0.82 16 37 H 0.09 1.03 6.03 -2.39 -0.01 1.02 16 38 H 0.35 8.13 8.46 -89.70 -0.76 7.37 16 39 H 0.06 0.99 7.38 -2.38 -0.02 0.97 16 40 H 0.08 1.60 8.00 -2.39 -0.02 1.58 16 41 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 42 H 0.09 4.68 6.14 -2.91 -0.02 4.66 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 2.10 8.07 -2.38 -0.02 2.08 16 45 H 0.08 2.41 6.20 -2.38 -0.01 2.39 16 46 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 47 H 0.01 0.47 6.19 -2.39 -0.01 0.45 16 48 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 49 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 50 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -74.67 407.88 3.41 -71.26 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.18 Total: 22.48 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 7.96 Total: -6.03 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -6.37 Total: -114.89 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.39 Total: -19.68 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -74.67 3.41 -71.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858325670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.546 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds